Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:3451187-6286785

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628 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35037 7 3452310 to 3475833 23523 + lincRNA gene predicted gene, 35037
Tssr64274 7 3455534 to 3455538 4 + TSS region transcription start site region 64274
Vent3 7 3463212 to 3463409 197 QTL ventricular size 3
Sle3 7 3463212 to 87493512 84030300 QTL systemic lupus erythmatosus susceptibility 3
Sle20 7 3463212 to 3463409 197 QTL systematic lupus erythematosus susceptibility 20
D7Mit178 7 3463212 to 3463409 197 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 178
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
Gm45920 7 3467788 to 3474974 7186 - lncRNA gene predicted gene, 45920
Vstm1 7 3468069 to 3482716 14647 protein coding gene V-set and transmembrane domain containing 1
Tarm1 7 3486500 to 3502624 16124 - protein coding gene T cell-interacting, activating receptor on myeloid cells 1
Gm44165 7 3489611 to 3491079 1468 - unclassified gene predicted gene, 44165
Tssr2067 7 3497804 to 3497811 7 - TSS region transcription start site region 2067
Tssr70406 7 3502502 to 3502510 8 - TSS region transcription start site region 70406
Tssr70407 7 3502542 to 3502578 36 - TSS region transcription start site region 70407
Tssr70408 7 3502587 to 3502592 5 - TSS region transcription start site region 70408
Tssr70409 7 3502617 to 3502629 12 - TSS region transcription start site region 70409
Tssr2068 7 3502755 to 3502766 11 - TSS region transcription start site region 2068
Gm44921 7 3567731 to 3568031 300 - pseudogene predicted gene 44921
Tssr64275 7 3570942 to 3570986 44 + TSS region transcription start site region 64275
D7Ertd59e 7 3574612 to 3574848 236 DNA segment DNA segment, Chr 7, ERATO Doi 59, expressed
Tssr70410 7 3578244 to 3578248 4 - TSS region transcription start site region 70410
Gm25100 7 3589164 to 3589264 100 + miRNA gene predicted gene, 25100
Gm44920 7 3591646 to 3604150 12504 - lincRNA gene predicted gene 44920
Oscar 7 3609813 to 3616157 6344 - protein coding gene osteoclast associated receptor
Cpgi18216 7 3611135 to 3611297 162 CpG island CpG island 18216
Tssr70411 7 3616105 to 3616116 11 - TSS region transcription start site region 70411
Tssr70412 7 3616135 to 3616152 17 - TSS region transcription start site region 70412
Cpgi18217 7 3617247 to 3617817 570 CpG island CpG island 18217
Tssr64276 7 3617357 to 3617389 32 + TSS region transcription start site region 64276
Ndufa3 7 3617373 to 3620161 2788 + protein coding gene NADH:ubiquinone oxidoreductase subunit A3
Tssr64277 7 3617573 to 3617587 14 + TSS region transcription start site region 64277
Tssr64278 7 3620111 to 3620122 11 + TSS region transcription start site region 64278
Tfpt 7 3620324 to 3629929 9605 - protein coding gene TCF3 (E2A) fusion partner
Cpgi18218 7 3628747 to 3628999 252 CpG island CpG island 18218
Cpgi18219 7 3629469 to 3630131 662 CpG island CpG island 18219
Tssr70413 7 3629577 to 3629616 39 - TSS region transcription start site region 70413
Tssr70414 7 3629874 to 3629924 50 - TSS region transcription start site region 70414
Prpf31 7 3629985 to 3642485 12500 + protein coding gene pre-mRNA processing factor 31
Tssr64279 7 3629985 to 3630037 52 + TSS region transcription start site region 64279
Tssr64280 7 3630045 to 3630056 11 + TSS region transcription start site region 64280
Gm15927 7 3632114 to 3644887 12773 - lncRNA gene predicted gene 15927
Cpgi18220 7 3644854 to 3646257 1403 CpG island CpG island 18220
Tssr64281 7 3645267 to 3645321 54 + TSS region transcription start site region 64281
Cnot3 7 3645269 to 3661109 15840 + protein coding gene CCR4-NOT transcription complex, subunit 3
Tssr64282 7 3645509 to 3645567 58 + TSS region transcription start site region 64282
Mir3572 7 3655962 to 3656047 85 + miRNA gene microRNA 3572
Tssr64283 7 3657735 to 3657740 5 + TSS region transcription start site region 64283
Leng1 7 3660107 to 3665840 5733 - protein coding gene leukocyte receptor cluster (LRC) member 1
Cpgi18221 7 3665161 to 3665783 622 CpG island CpG island 18221
Tssr70415 7 3665444 to 3665488 44 - TSS region transcription start site region 70415
Tmc4 7 3665790 to 3677553 11763 - protein coding gene transmembrane channel-like gene family 4
Gm15929 7 3666252 to 3670278 4026 + antisense lncRNA gene predicted gene 15929
Tssr70416 7 3666917 to 3666941 24 - TSS region transcription start site region 70416
Tssr70417 7 3667190 to 3667240 50 - TSS region transcription start site region 70417
Cpgi18222 7 3671259 to 3671511 252 CpG island CpG island 18222
Tssr70418 7 3677478 to 3677502 24 - TSS region transcription start site region 70418
Tssr70419 7 3677509 to 3677529 20 - TSS region transcription start site region 70419
Tssr70420 7 3677531 to 3677553 22 - TSS region transcription start site region 70420
Mboat7 7 3677789 to 3693523 15734 - protein coding gene membrane bound O-acyltransferase domain containing 7
Tssr70421 7 3685917 to 3685984 67 - TSS region transcription start site region 70421
Cpgi18223 7 3692399 to 3694966 2567 CpG island CpG island 18223
Tssr70422 7 3692761 to 3692828 67 - TSS region transcription start site region 70422
Tssr70423 7 3692906 to 3693032 126 - TSS region transcription start site region 70423
Tssr70424 7 3693139 to 3693194 55 - TSS region transcription start site region 70424
Tsen34 7 3693436 to 3701035 7599 + protein coding gene tRNA splicing endonuclease subunit 34
Tssr70425 7 3693533 to 3693552 19 - TSS region transcription start site region 70425
Tssr70426 7 3693554 to 3693579 25 - TSS region transcription start site region 70426
Tssr64284 7 3693723 to 3693815 92 + TSS region transcription start site region 64284
Tssr64285 7 3694512 to 3694552 40 + TSS region transcription start site region 64285
Tssr64286 7 3694587 to 3694590 3 + TSS region transcription start site region 64286
Cpgi18224 7 3703799 to 3704829 1030 CpG island CpG island 18224
Tssr70427 7 3703900 to 3703931 31 - TSS region transcription start site region 70427
Tssr64287 7 3703979 to 3704024 45 + TSS region transcription start site region 64287
Rps9 7 3703993 to 3706897 2904 + protein coding gene ribosomal protein S9
Tssr64288 7 3704025 to 3704051 26 + TSS region transcription start site region 64288
Tssr64289 7 3704199 to 3704248 49 + TSS region transcription start site region 64289
Tssr64290 7 3704307 to 3704334 27 + TSS region transcription start site region 64290
Tssr64291 7 3704556 to 3704586 30 + TSS region transcription start site region 64291
Tssr64292 7 3704678 to 3704691 13 + TSS region transcription start site region 64292
Tssr64293 7 3705025 to 3705042 17 + TSS region transcription start site region 64293
Tssr64294 7 3705715 to 3705739 24 + TSS region transcription start site region 64294
Tssr70428 7 3706766 to 3706795 29 - TSS region transcription start site region 70428
Pirb 7 3712505 to 3720447 7942 - protein coding gene paired Ig-like receptor B
Tssr64295 7 3712581 to 3712585 4 + TSS region transcription start site region 64295
Tssr64296 7 3712597 to 3712611 14 + TSS region transcription start site region 64296
Tssr64297 7 3712657 to 3712666 9 + TSS region transcription start site region 64297
Tssr70429 7 3714268 to 3714297 29 - TSS region transcription start site region 70429
Tssr70430 7 3715711 to 3715734 23 - TSS region transcription start site region 70430
Pira1 7 3731626 to 3739949 8323 - protein coding gene paired-Ig-like receptor A1
Gm15922 7 3731630 to 3739889 8259 - polymorphic pseudogene predicted gene 15922
Gm15930 7 3756905 to 3764030 7125 - pseudogene predicted gene 15930
Gm15925 7 3788883 to 3799631 10748 - pseudogene predicted gene 15925
Gm15448 7 3816781 to 3825687 8906 - protein coding gene predicted gene 15448
Pira2 7 3836812 to 3845051 8239 - protein coding gene paired-Ig-like receptor A2
Gm10693 7 3860681 to 3869170 8489 - pseudogene predicted pseudogene 10693
Gm14548 7 3884242 to 3898120 13878 - protein coding gene predicted gene 14548
Tssr70431 7 3898129 to 3898142 13 - TSS region transcription start site region 70431
Lilra6 7 3908280 to 3915503 7223 - protein coding gene leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
Gm44581 7 3928853 to 3932849 3996 - lincRNA gene predicted gene 44581
Gm44580 7 3933518 to 3934394 876 - pseudogene predicted gene 44580
Gm3189 7 3956240 to 3957071 831 - pseudogene predicted gene 3189
Tssr64298 7 3981105 to 3981118 13 + TSS region transcription start site region 64298
Tssr64299 7 3981131 to 3981134 3 + TSS region transcription start site region 64299
Tssr64300 7 3981140 to 3981147 7 + TSS region transcription start site region 64300
1700095K22Rik 7 3981150 to 3982877 1727 + lincRNA gene RIKEN cDNA 1700095K22 gene
Tssr64301 7 3981153 to 3981160 7 + TSS region transcription start site region 64301
Tssr2069 7 3981809 to 3981813 4 + TSS region transcription start site region 2069
Gm7363 7 3983787 to 3984185 398 - pseudogene predicted gene 7363
Tssr70432 7 3984206 to 3984218 12 - TSS region transcription start site region 70432
Gm15928 7 3993239 to 3993518 279 - pseudogene predicted gene 15928
Tssr70433 7 3993719 to 3993722 3 - TSS region transcription start site region 70433
Lair1 7 4003402 to 4063204 59802 - protein coding gene leukocyte-associated Ig-like receptor 1
Tssr70434 7 4008008 to 4008026 18 - TSS region transcription start site region 70434
Tssr70435 7 4008106 to 4008117 11 - TSS region transcription start site region 70435
Tssr70436 7 4008351 to 4008372 21 - TSS region transcription start site region 70436
Tssr70437 7 4008376 to 4008393 17 - TSS region transcription start site region 70437
Tssr70438 7 4009513 to 4009524 11 - TSS region transcription start site region 70438
Tssr70439 7 4024507 to 4024534 27 - TSS region transcription start site region 70439
Tssr70440 7 4028788 to 4028798 10 - TSS region transcription start site region 70440
Tssr70441 7 4062683 to 4062688 5 - TSS region transcription start site region 70441
Tssr70442 7 4063126 to 4063139 13 - TSS region transcription start site region 70442
Tssr70443 7 4063155 to 4063188 33 - TSS region transcription start site region 70443
Tssr70444 7 4063195 to 4063210 15 - TSS region transcription start site region 70444
9430041J12Rik 7 4074125 to 4120728 46603 - antisense lncRNA gene RIKEN cDNA 9430041J12 gene
Gm23741 7 4101890 to 4102060 170 + snRNA gene predicted gene, 23741
Cpgi18225 7 4119341 to 4120024 683 CpG island CpG island 18225
Tssr64302 7 4119525 to 4119555 30 + TSS region transcription start site region 64302
Ttyh1 7 4119526 to 4135407 15881 + protein coding gene tweety family member 1
Tssr64303 7 4119556 to 4119596 40 + TSS region transcription start site region 64303
Tssr64304 7 4119598 to 4119609 11 + TSS region transcription start site region 64304
Tssr70445 7 4120065 to 4120077 12 - TSS region transcription start site region 70445
Tssr70446 7 4120433 to 4120466 33 - TSS region transcription start site region 70446
Cpgi18226 7 4124566 to 4124723 157 CpG island CpG island 18226
D030047H15Rik 7 4126340 to 4136926 10586 - antisense lncRNA gene RIKEN cDNA D030047H15 gene
Tssr64305 7 4129175 to 4129186 11 + TSS region transcription start site region 64305
Tssr64306 7 4129265 to 4129285 20 + TSS region transcription start site region 64306
Tssr2070 7 4129296 to 4129305 9 + TSS region transcription start site region 2070
Tssr64307 7 4129321 to 4129330 9 + TSS region transcription start site region 64307
Tssr64308 7 4130799 to 4130834 35 + TSS region transcription start site region 64308
Tssr64309 7 4133157 to 4133169 12 + TSS region transcription start site region 64309
Tssr64310 7 4133645 to 4133651 6 + TSS region transcription start site region 64310
Cpgi18227 7 4136457 to 4137885 1428 CpG island CpG island 18227
Tssr64311 7 4137032 to 4137066 34 + TSS region transcription start site region 64311
Leng8 7 4137053 to 4148177 11124 + protein coding gene leukocyte receptor cluster (LRC) member 8
Tssr64312 7 4137475 to 4137484 9 + TSS region transcription start site region 64312
Tssr64313 7 4139495 to 4139505 10 + TSS region transcription start site region 64313
Tssr64314 7 4139943 to 4139967 24 + TSS region transcription start site region 64314
Tssr64315 7 4142089 to 4142109 20 + TSS region transcription start site region 64315
Tssr64316 7 4147192 to 4147205 13 + TSS region transcription start site region 64316
Tssr64317 7 4147324 to 4147340 16 + TSS region transcription start site region 64317
Tssr64318 7 4147677 to 4147760 83 + TSS region transcription start site region 64318
Tssr64319 7 4147800 to 4147826 26 + TSS region transcription start site region 64319
Tssr64320 7 4147838 to 4147862 24 + TSS region transcription start site region 64320
Tssr64321 7 4147867 to 4147879 12 + TSS region transcription start site region 64321
Leng9 7 4148183 to 4149872 1689 - protein coding gene leukocyte receptor cluster (LRC) member 9
Cpgi18228 7 4148825 to 4149976 1151 CpG island CpG island 18228
Tssr64322 7 4149322 to 4149357 35 + TSS region transcription start site region 64322
Tssr70447 7 4149481 to 4149517 36 - TSS region transcription start site region 70447
Tssr70448 7 4149781 to 4149829 48 - TSS region transcription start site region 70448
Tssr70449 7 4150219 to 4150230 11 - TSS region transcription start site region 70449
Tssr70450 7 4150371 to 4150376 5 - TSS region transcription start site region 70450
Cdc42ep5 7 4151260 to 4164741 13481 - protein coding gene CDC42 effector protein (Rho GTPase binding) 5
Cpgi18229 7 4151306 to 4151842 536 CpG island CpG island 18229
Tssr64323 7 4151394 to 4151408 14 + TSS region transcription start site region 64323
Tssr70451 7 4151864 to 4151876 12 - TSS region transcription start site region 70451
Tssr70452 7 4164247 to 4164266 19 - TSS region transcription start site region 70452
Tssr70453 7 4164501 to 4164576 75 - TSS region transcription start site region 70453
Tssr70454 7 4164661 to 4164675 14 - TSS region transcription start site region 70454
Tssr70455 7 4164684 to 4164715 31 - TSS region transcription start site region 70455
Tssr70456 7 4164720 to 4164741 21 - TSS region transcription start site region 70456
Tssr70457 7 4164796 to 4164827 31 - TSS region transcription start site region 70457
Tssr70458 7 4165026 to 4165061 35 - TSS region transcription start site region 70458
Tssr2071 7 4170937 to 4170941 4 + TSS region transcription start site region 2071
Gm5319 7 4176363 to 4177235 872 - pseudogene predicted gene 5319
Gm44807 7 4177367 to 4177520 153 + pseudogene predicted gene 44807
Gm15926 7 4207832 to 4208668 836 + pseudogene predicted gene 15926
Tssr64324 7 4237699 to 4237712 13 + TSS region transcription start site region 64324
Lilra5 7 4237754 to 4243463 5709 + protein coding gene leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5
Gm15923 7 4259064 to 4259515 451 + pseudogene predicted gene 15923
Tssr64325 7 4274155 to 4274163 8 + TSS region transcription start site region 64325
Gm15931 7 4274189 to 4282645 8456 + pseudogene predicted gene 15931
Gm44881 7 4301348 to 4301714 366 + pseudogene predicted gene 44881
Tssr64326 7 4337710 to 4337736 26 + TSS region transcription start site region 64326
Ncr1 7 4337724 to 4345164 7440 + protein coding gene natural cytotoxicity triggering receptor 1
Gm45013 7 4359599 to 4359776 177 + pseudogene predicted gene 45013
Gp6 7 4363965 to 4397744 33779 - protein coding gene glycoprotein 6 (platelet)
Gm25349 7 4388452 to 4388561 109 - miRNA gene predicted gene, 25349
Gm24752 7 4393011 to 4393120 109 - miRNA gene predicted gene, 24752
Tssr70459 7 4397705 to 4397728 23 - TSS region transcription start site region 70459
Tssr64327 7 4412321 to 4412330 9 + TSS region transcription start site region 64327
Atp6v0c-ps1 7 4412438 to 4412900 462 + pseudogene ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 1
Rdh13 7 4425665 to 4445846 20181 - protein coding gene retinol dehydrogenase 13 (all-trans and 9-cis)
Tssr70460 7 4426797 to 4426801 4 - TSS region transcription start site region 70460
Gm24605 7 4441920 to 4442015 95 - miRNA gene predicted gene, 24605
Tssr70461 7 4445205 to 4445243 38 - TSS region transcription start site region 70461
Cpgi18230 7 4445235 to 4445785 550 CpG island CpG island 18230
Tssr70462 7 4445568 to 4445575 7 - TSS region transcription start site region 70462
Tssr70463 7 4445595 to 4445631 36 - TSS region transcription start site region 70463
Tssr70464 7 4445637 to 4445662 25 - TSS region transcription start site region 70464
Gm15494 7 4445697 to 4471285 25588 - antisense lncRNA gene predicted gene 15494