Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:3445942-3695986

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35037 7 3452310 to 3475833 23523 + lincRNA gene predicted gene, 35037
Tssr64274 7 3455534 to 3455538 4 + TSS region transcription start site region 64274
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
D7Mit178 7 3463212 to 3463409 197 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 178
Sle3 7 3463212 to 87493512 84030300 QTL systemic lupus erythmatosus susceptibility 3
Sle20 7 3463212 to 3463409 197 QTL systematic lupus erythematosus susceptibility 20
Vent3 7 3463212 to 3463409 197 QTL ventricular size 3
Gm45920 7 3467788 to 3474974 7186 - lncRNA gene predicted gene, 45920
Vstm1 7 3468069 to 3482716 14647 protein coding gene V-set and transmembrane domain containing 1
Tarm1 7 3486500 to 3502624 16124 - protein coding gene T cell-interacting, activating receptor on myeloid cells 1
Gm44165 7 3489611 to 3491079 1468 - unclassified gene predicted gene, 44165
Tssr2067 7 3497804 to 3497811 7 - TSS region transcription start site region 2067
Tssr70406 7 3502502 to 3502510 8 - TSS region transcription start site region 70406
Tssr70407 7 3502542 to 3502578 36 - TSS region transcription start site region 70407
Tssr70408 7 3502587 to 3502592 5 - TSS region transcription start site region 70408
Tssr70409 7 3502617 to 3502629 12 - TSS region transcription start site region 70409
Tssr2068 7 3502755 to 3502766 11 - TSS region transcription start site region 2068
Gm44921 7 3567731 to 3568031 300 - pseudogene predicted gene 44921
Tssr64275 7 3570942 to 3570986 44 + TSS region transcription start site region 64275
D7Ertd59e 7 3574612 to 3574848 236 DNA segment DNA segment, Chr 7, ERATO Doi 59, expressed
Tssr70410 7 3578244 to 3578248 4 - TSS region transcription start site region 70410
Gm25100 7 3589164 to 3589264 100 + miRNA gene predicted gene, 25100
Gm44920 7 3591646 to 3604150 12504 - lincRNA gene predicted gene 44920
Oscar 7 3609813 to 3616157 6344 - protein coding gene osteoclast associated receptor
Cpgi18216 7 3611135 to 3611297 162 CpG island CpG island 18216
Tssr70411 7 3616105 to 3616116 11 - TSS region transcription start site region 70411
Tssr70412 7 3616135 to 3616152 17 - TSS region transcription start site region 70412
Cpgi18217 7 3617247 to 3617817 570 CpG island CpG island 18217
Tssr64276 7 3617357 to 3617389 32 + TSS region transcription start site region 64276
Ndufa3 7 3617373 to 3620161 2788 + protein coding gene NADH:ubiquinone oxidoreductase subunit A3
Tssr64277 7 3617573 to 3617587 14 + TSS region transcription start site region 64277
Tssr64278 7 3620111 to 3620122 11 + TSS region transcription start site region 64278
Tfpt 7 3620324 to 3629929 9605 - protein coding gene TCF3 (E2A) fusion partner
Cpgi18218 7 3628747 to 3628999 252 CpG island CpG island 18218
Cpgi18219 7 3629469 to 3630131 662 CpG island CpG island 18219
Tssr70413 7 3629577 to 3629616 39 - TSS region transcription start site region 70413
Tssr70414 7 3629874 to 3629924 50 - TSS region transcription start site region 70414
Prpf31 7 3629985 to 3642485 12500 + protein coding gene pre-mRNA processing factor 31
Tssr64279 7 3629985 to 3630037 52 + TSS region transcription start site region 64279
Tssr64280 7 3630045 to 3630056 11 + TSS region transcription start site region 64280
Gm15927 7 3632114 to 3644887 12773 - lncRNA gene predicted gene 15927
Cpgi18220 7 3644854 to 3646257 1403 CpG island CpG island 18220
Tssr64281 7 3645267 to 3645321 54 + TSS region transcription start site region 64281
Cnot3 7 3645269 to 3661109 15840 + protein coding gene CCR4-NOT transcription complex, subunit 3
Tssr64282 7 3645509 to 3645567 58 + TSS region transcription start site region 64282
Mir3572 7 3655962 to 3656047 85 + miRNA gene microRNA 3572
Tssr64283 7 3657735 to 3657740 5 + TSS region transcription start site region 64283
Leng1 7 3660107 to 3665840 5733 - protein coding gene leukocyte receptor cluster (LRC) member 1
Cpgi18221 7 3665161 to 3665783 622 CpG island CpG island 18221
Tssr70415 7 3665444 to 3665488 44 - TSS region transcription start site region 70415
Tmc4 7 3665790 to 3677553 11763 - protein coding gene transmembrane channel-like gene family 4
Gm15929 7 3666252 to 3670278 4026 + antisense lncRNA gene predicted gene 15929
Tssr70416 7 3666917 to 3666941 24 - TSS region transcription start site region 70416
Tssr70417 7 3667190 to 3667240 50 - TSS region transcription start site region 70417
Cpgi18222 7 3671259 to 3671511 252 CpG island CpG island 18222
Tssr70418 7 3677478 to 3677502 24 - TSS region transcription start site region 70418
Tssr70419 7 3677509 to 3677529 20 - TSS region transcription start site region 70419
Tssr70420 7 3677531 to 3677553 22 - TSS region transcription start site region 70420
Mboat7 7 3677789 to 3693523 15734 - protein coding gene membrane bound O-acyltransferase domain containing 7
Tssr70421 7 3685917 to 3685984 67 - TSS region transcription start site region 70421
Cpgi18223 7 3692399 to 3694966 2567 CpG island CpG island 18223
Tssr70422 7 3692761 to 3692828 67 - TSS region transcription start site region 70422
Tssr70423 7 3692906 to 3693032 126 - TSS region transcription start site region 70423
Tssr70424 7 3693139 to 3693194 55 - TSS region transcription start site region 70424
Tsen34 7 3693436 to 3701035 7599 + protein coding gene tRNA splicing endonuclease subunit 34
Tssr70425 7 3693533 to 3693552 19 - TSS region transcription start site region 70425
Tssr70426 7 3693554 to 3693579 25 - TSS region transcription start site region 70426
Tssr64284 7 3693723 to 3693815 92 + TSS region transcription start site region 64284
Tssr64285 7 3694512 to 3694552 40 + TSS region transcription start site region 64285
Tssr64286 7 3694587 to 3694590 3 + TSS region transcription start site region 64286
nmf206 7 30333196 to 3463212 -26869984 heritable phenotypic marker neuroscience mutagenesis facility, 206