Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:34244434-35016558

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4931406P16Rik 7 34236707 to 34313551 76844 - protein coding gene RIKEN cDNA 4931406P16 gene
BC060293 7 34250252 to 34251355 1103 - unclassified gene cDNA sequence BC060293
Gm6096 7 34251038 to 34251493 455 + protein coding gene predicted gene 6096
Tssr72000 7 34292087 to 34292091 4 - TSS region transcription start site region 72000
Tssr72001 7 34305486 to 34305497 11 - TSS region transcription start site region 72001
Tssr72002 7 34305518 to 34305543 25 - TSS region transcription start site region 72002
Cpgi18846 7 34312715 to 34313852 1137 CpG island CpG island 18846
Tssr65878 7 34313018 to 34313026 8 + TSS region transcription start site region 65878
Tssr72003 7 34313489 to 34313500 11 - TSS region transcription start site region 72003
Tssr72004 7 34313508 to 34313528 20 - TSS region transcription start site region 72004
Tssr72005 7 34313531 to 34313568 37 - TSS region transcription start site region 72005
Lsm14a 7 34344637 to 34389637 45000 - protein coding gene LSM14A mRNA processing body assembly factor
Tssr72006 7 34357805 to 34357822 17 - TSS region transcription start site region 72006
Tssr72007 7 34360622 to 34360623 1 - TSS region transcription start site region 72007
Gm44567 7 34362701 to 34365331 2630 - unclassified gene predicted gene 44567
Gm12774 7 34383659 to 34384074 415 + pseudogene predicted gene 12774
Tssr72008 7 34385243 to 34385252 9 - TSS region transcription start site region 72008
Cpgi18847 7 34388580 to 34390232 1652 CpG island CpG island 18847
Tssr65879 7 34388604 to 34388671 67 + TSS region transcription start site region 65879
Gm12764 7 34388665 to 34394779 6114 + antisense lncRNA gene predicted gene 12764
Tssr72009 7 34389461 to 34389473 12 - TSS region transcription start site region 72009
Tssr72010 7 34389575 to 34389638 63 - TSS region transcription start site region 72010
Tssr72011 7 34389684 to 34389695 11 - TSS region transcription start site region 72011
Tssr72012 7 34389699 to 34389720 21 - TSS region transcription start site region 72012
2310043P16Rik 7 34389732 to 34393612 3880 + unclassified gene RIKEN cDNA 2310043P16 gene
Tssr65880 7 34389747 to 34389803 56 + TSS region transcription start site region 65880
Cpgi18848 7 34411021 to 34411288 267 CpG island CpG island 18848
D7Mit79 7 34422737 to 34422848 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 79
Gm12766 7 34438137 to 34520885 82748 + lincRNA gene predicted gene 12766
Gm12780 7 34495421 to 34496065 644 - pseudogene predicted gene 12780
Gm31709 7 34501027 to 34501407 380 - pseudogene predicted gene, 31709
Gm35297 7 34522341 to 34547064 24723 - lncRNA gene predicted gene, 35297
Tssr72013 7 34546783 to 34546798 15 - TSS region transcription start site region 72013
Gm12784 7 34547206 to 34560149 12943 + lincRNA gene predicted gene 12784
Cpgi18849 7 34570174 to 34571083 909 CpG island CpG island 18849
Cpgi18850 7 34606071 to 34606325 254 CpG island CpG island 18850
Gm35378 7 34629434 to 34631558 2124 + lncRNA gene predicted gene, 35378
Cpgi18851 7 34630484 to 34630985 501 CpG island CpG island 18851
Gm44837 7 34636996 to 34637712 716 - lincRNA gene predicted gene 44837
Kctd15 7 34639015 to 34655509 16494 - protein coding gene potassium channel tetramerisation domain containing 15
D7Ertd351e 7 34643926 to 34644148 222 DNA segment DNA segment, Chr 7, ERATO Doi 351, expressed
Cpgi18852 7 34652780 to 34655930 3150 CpG island CpG island 18852
Tssr72014 7 34654342 to 34654393 51 - TSS region transcription start site region 72014
Tssr65881 7 34655277 to 34655301 24 + TSS region transcription start site region 65881
Tssr72015 7 34655500 to 34655515 15 - TSS region transcription start site region 72015
Gm12781 7 34655570 to 34661202 5632 + antisense lncRNA gene predicted gene 12781
Tssr65882 7 34659958 to 34659969 11 + TSS region transcription start site region 65882
Tssr65883 7 34659970 to 34660004 34 + TSS region transcription start site region 65883
Gm12756 7 34665413 to 34673999 8586 - lincRNA gene predicted gene 12756
Chst8 7 34674468 to 34812711 138243 - protein coding gene carbohydrate sulfotransferase 8
Cpgi18853 7 34675081 to 34676233 1152 CpG island CpG island 18853
Cpgi18854 7 34693962 to 34694227 265 CpG island CpG island 18854
Tssr2198 7 34725059 to 34725060 1 + TSS region transcription start site region 2198
Tssr65884 7 34743946 to 34743950 4 + TSS region transcription start site region 65884
Tssr72016 7 34748289 to 34748294 5 - TSS region transcription start site region 72016
Cpgi18855 7 34753129 to 34753567 438 CpG island CpG island 18855
D7Mit156 7 34801081 to 34801224 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 156
Cpgi18856 7 34811527 to 34813354 1827 CpG island CpG island 18856
Tssr72017 7 34812677 to 34812693 16 - TSS region transcription start site region 72017
Gm38987 7 34812993 to 34844179 31186 + lncRNA gene predicted gene, 38987
Cpgi18857 7 34819796 to 34820177 381 CpG island CpG island 18857
D7Ertd1e 7 34854727 to 34854962 235 DNA segment DNA segment, Chr 7, ERATO Doi 1, expressed
Tssr2199 7 34881585 to 34881589 4 - TSS region transcription start site region 2199
Cpgi18858 7 34912243 to 34912880 637 CpG island CpG island 18858
Tssr65885 7 34912400 to 34912415 15 + TSS region transcription start site region 65885
Pepd 7 34912407 to 35044708 132301 + protein coding gene peptidase D
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Gm25922 7 34943856 to 34943985 129 - snoRNA gene predicted gene, 25922
Tssr72018 7 34952985 to 34952994 9 - TSS region transcription start site region 72018
Tssr65886 7 34969335 to 34969372 37 + TSS region transcription start site region 65886
Gm35534 7 34983346 to 34990113 6767 - lncRNA gene predicted gene, 35534