Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:3240813-6240883

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732 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nlrp12 7 3219495 to 3250159 30664 - protein coding gene NLR family, pyrin domain containing 12
Tssr70400 7 3249621 to 3249633 12 - TSS region transcription start site region 70400
Tssr70401 7 3249659 to 3249672 13 - TSS region transcription start site region 70401
Tssr70402 7 3249711 to 3249755 44 - TSS region transcription start site region 70402
Tssr64201 7 3249858 to 3249867 9 + TSS region transcription start site region 64201
Gm20553 7 3264349 to 3265192 843 - pseudogene predicted gene, 20553
Cpgi18199 7 3264627 to 3265106 479 CpG island CpG island 18199
D7Mit21 7 3266568 to 3266693 125 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 21
Mprf 7 3266568 to 3266693 125 QTL maternal performance
Pbft4 7 3266568 to 3266693 125 QTL percent body fat 4
Gm5340 7 3284599 to 3285474 875 - pseudogene predicted gene 5340
Cpgi18200 7 3284959 to 3285139 180 CpG island CpG island 18200
Tssr64202 7 3289012 to 3289047 35 + TSS region transcription start site region 64202
Myadm 7 3289038 to 3299355 10317 + protein coding gene myeloid-associated differentiation marker
Tssr64203 7 3289063 to 3289099 36 + TSS region transcription start site region 64203
Cpgi18201 7 3289153 to 3289305 152 CpG island CpG island 18201
Tssr64204 7 3289200 to 3289212 12 + TSS region transcription start site region 64204
Tssr64205 7 3289216 to 3289232 16 + TSS region transcription start site region 64205
Tssr64206 7 3289261 to 3289301 40 + TSS region transcription start site region 64206
Tssr64207 7 3289515 to 3289517 2 + TSS region transcription start site region 64207
Tssr70403 7 3290135 to 3290151 16 - TSS region transcription start site region 70403
Tssr64208 7 3290540 to 3290549 9 + TSS region transcription start site region 64208
Tssr64209 7 3290553 to 3290586 33 + TSS region transcription start site region 64209
Tssr64210 7 3290588 to 3290614 26 + TSS region transcription start site region 64210
Tssr64211 7 3291493 to 3291504 11 + TSS region transcription start site region 64211
Tssr64212 7 3292975 to 3292990 15 + TSS region transcription start site region 64212
Tssr64213 7 3293000 to 3293016 16 + TSS region transcription start site region 64213
Tssr64214 7 3293027 to 3293061 34 + TSS region transcription start site region 64214
Tssr64215 7 3293073 to 3293122 49 + TSS region transcription start site region 64215
Tssr64216 7 3293126 to 3293135 9 + TSS region transcription start site region 64216
Tssr64217 7 3293139 to 3293181 42 + TSS region transcription start site region 64217
Tssr64218 7 3296784 to 3296804 20 + TSS region transcription start site region 64218
Tssr70404 7 3296788 to 3296801 13 - TSS region transcription start site region 70404
Tssr64219 7 3296805 to 3296821 16 + TSS region transcription start site region 64219
Tssr64220 7 3296957 to 3296990 33 + TSS region transcription start site region 64220
Tssr64221 7 3296994 to 3297011 17 + TSS region transcription start site region 64221
Tssr70405 7 3297050 to 3297083 33 - TSS region transcription start site region 70405
Tssr64222 7 3297376 to 3297420 44 + TSS region transcription start site region 64222
Tssr64223 7 3297425 to 3297443 18 + TSS region transcription start site region 64223
Tssr64224 7 3297506 to 3297527 21 + TSS region transcription start site region 64224
Tssr64225 7 3297549 to 3297560 11 + TSS region transcription start site region 64225
Tssr64226 7 3297576 to 3297583 7 + TSS region transcription start site region 64226
Tssr64227 7 3297598 to 3297606 8 + TSS region transcription start site region 64227
Tssr64228 7 3297679 to 3297711 32 + TSS region transcription start site region 64228
Tssr64229 7 3297739 to 3297806 67 + TSS region transcription start site region 64229
Tssr64230 7 3297808 to 3297838 30 + TSS region transcription start site region 64230
Tssr64231 7 3297889 to 3297903 14 + TSS region transcription start site region 64231
Tssr64232 7 3297922 to 3297933 11 + TSS region transcription start site region 64232
Tssr64233 7 3298093 to 3298119 26 + TSS region transcription start site region 64233
Tssr64234 7 3298129 to 3298138 9 + TSS region transcription start site region 64234
Tssr64235 7 3298204 to 3298232 28 + TSS region transcription start site region 64235
Tssr64236 7 3298775 to 3298810 35 + TSS region transcription start site region 64236
Tssr64237 7 3298875 to 3298880 5 + TSS region transcription start site region 64237
Tssr64238 7 3299037 to 3299048 11 + TSS region transcription start site region 64238
Tssr64239 7 3299075 to 3299085 10 + TSS region transcription start site region 64239
Cpgi18202 7 3301953 to 3302389 436 CpG island CpG island 18202
Tssr64240 7 3303503 to 3303565 62 + TSS region transcription start site region 64240
Cpgi18203 7 3303516 to 3303917 401 CpG island CpG island 18203
Prkcg 7 3303532 to 3331099 27567 + protein coding gene protein kinase C, gamma
Tssr64241 7 3303571 to 3303584 13 + TSS region transcription start site region 64241
Tssr64242 7 3303643 to 3303654 11 + TSS region transcription start site region 64242
Tssr64243 7 3303701 to 3303708 7 + TSS region transcription start site region 64243
Tssr64244 7 3308951 to 3308958 7 + TSS region transcription start site region 64244
Cpgi18204 7 3310681 to 3311039 358 CpG island CpG island 18204
Cpgi18205 7 3330110 to 3330487 377 CpG island CpG island 18205
Tssr64245 7 3330253 to 3330263 10 + TSS region transcription start site region 64245
Tssr64246 7 3330375 to 3330391 16 + TSS region transcription start site region 64246
Tssr64247 7 3330553 to 3330566 13 + TSS region transcription start site region 64247
Tssr2064 7 3330804 to 3330816 12 + TSS region transcription start site region 2064
Tssr2065 7 3330883 to 3330897 14 + TSS region transcription start site region 2065
Tssr2066 7 3330901 to 3330921 20 + TSS region transcription start site region 2066
Cpgi18206 7 3331901 to 3332125 224 CpG island CpG island 18206
Tssr64248 7 3331998 to 3332076 78 + TSS region transcription start site region 64248
Tssr64249 7 3332134 to 3332168 34 + TSS region transcription start site region 64249
Tssr64250 7 3332172 to 3332210 38 + TSS region transcription start site region 64250
Cpgi18207 7 3332784 to 3333510 726 CpG island CpG island 18207
Tssr64251 7 3332789 to 3332837 48 + TSS region transcription start site region 64251
Tssr64252 7 3332918 to 3332950 32 + TSS region transcription start site region 64252
Cacng7 7 3332955 to 3368221 35266 + protein coding gene calcium channel, voltage-dependent, gamma subunit 7
Cpgi18208 7 3336563 to 3336773 210 CpG island CpG island 18208
Gm44256 7 3337545 to 3337879 334 + unclassified gene predicted gene, 44256
Tssr64253 7 3338814 to 3338842 28 + TSS region transcription start site region 64253
Cpgi18209 7 3338960 to 3339210 250 CpG island CpG island 18209
Tssr64254 7 3365957 to 3365971 14 + TSS region transcription start site region 64254
Tssr64255 7 3366176 to 3366188 12 + TSS region transcription start site region 64255
Tssr64256 7 3366193 to 3366213 20 + TSS region transcription start site region 64256
Cpgi18210 7 3366609 to 3367060 451 CpG island CpG island 18210
Tssr64257 7 3366877 to 3366891 14 + TSS region transcription start site region 64257
Tssr64258 7 3366940 to 3366997 57 + TSS region transcription start site region 64258
Tssr64259 7 3367380 to 3367402 22 + TSS region transcription start site region 64259
Tssr64260 7 3367410 to 3367425 15 + TSS region transcription start site region 64260
Gm9567 7 3378120 to 3390079 11959 unclassified gene predicted gene 9567
Gm44257 7 3378121 to 3390080 11959 - lincRNA gene predicted gene, 44257
Cpgi18211 7 3387913 to 3388368 455 CpG island CpG island 18211
Tssr64261 7 3390181 to 3390231 50 + TSS region transcription start site region 64261
Tssr64262 7 3390316 to 3390337 21 + TSS region transcription start site region 64262
Tssr64263 7 3390469 to 3390479 10 + TSS region transcription start site region 64263
Tssr64264 7 3390629 to 3390707 78 + TSS region transcription start site region 64264
Tssr64265 7 3390785 to 3390861 76 + TSS region transcription start site region 64265
Tssr64266 7 3390879 to 3390899 20 + TSS region transcription start site region 64266
Tssr64267 7 3390909 to 3390920 11 + TSS region transcription start site region 64267
Tssr64268 7 3391019 to 3391040 21 + TSS region transcription start site region 64268
Tssr64269 7 3391098 to 3391115 17 + TSS region transcription start site region 64269
Gm44151 7 3391596 to 3400926 9330 - antisense lncRNA gene predicted gene, 44151
Cacng8 7 3394042 to 3415605 21563 + protein coding gene calcium channel, voltage-dependent, gamma subunit 8
Cpgi18212 7 3411103 to 3411450 347 CpG island CpG island 18212
Tssr64270 7 3411472 to 3411515 43 + TSS region transcription start site region 64270
Cpgi18213 7 3411925 to 3412359 434 CpG island CpG island 18213
Cpgi18214 7 3414649 to 3414994 345 CpG island CpG island 18214
Gm23450 7 3415066 to 3415156 90 + miRNA gene predicted gene, 23450
3300002P13Rik 7 3421665 to 3423445 1780 - lincRNA gene RIKEN cDNA 3300002P13 gene
Cpgi18215 7 3423519 to 3423810 291 CpG island CpG island 18215
Tssr64271 7 3423589 to 3423594 5 + TSS region transcription start site region 64271
Tssr64272 7 3423600 to 3423611 11 + TSS region transcription start site region 64272
Tssr64273 7 3423612 to 3423654 42 + TSS region transcription start site region 64273
Cacng6 7 3424195 to 3435667 11472 + protein coding gene calcium channel, voltage-dependent, gamma subunit 6
Gm35037 7 3452310 to 3475833 23523 + lincRNA gene predicted gene, 35037
Tssr64274 7 3455534 to 3455538 4 + TSS region transcription start site region 64274
Sle3 7 3463212 to 87493512 84030300 QTL systemic lupus erythmatosus susceptibility 3
Sle20 7 3463212 to 3463409 197 QTL systematic lupus erythematosus susceptibility 20
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
D7Mit178 7 3463212 to 3463409 197 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 178
Vent3 7 3463212 to 3463409 197 QTL ventricular size 3
Gm45920 7 3467788 to 3474974 7186 - lncRNA gene predicted gene, 45920
Vstm1 7 3468069 to 3482716 14647 protein coding gene V-set and transmembrane domain containing 1
Tarm1 7 3486500 to 3502624 16124 - protein coding gene T cell-interacting, activating receptor on myeloid cells 1
Gm44165 7 3489611 to 3491079 1468 - unclassified gene predicted gene, 44165
Tssr2067 7 3497804 to 3497811 7 - TSS region transcription start site region 2067
Tssr70406 7 3502502 to 3502510 8 - TSS region transcription start site region 70406
Tssr70407 7 3502542 to 3502578 36 - TSS region transcription start site region 70407
Tssr70408 7 3502587 to 3502592 5 - TSS region transcription start site region 70408
Tssr70409 7 3502617 to 3502629 12 - TSS region transcription start site region 70409
Tssr2068 7 3502755 to 3502766 11 - TSS region transcription start site region 2068
Gm44921 7 3567731 to 3568031 300 - pseudogene predicted gene 44921
Tssr64275 7 3570942 to 3570986 44 + TSS region transcription start site region 64275
D7Ertd59e 7 3574612 to 3574848 236 DNA segment DNA segment, Chr 7, ERATO Doi 59, expressed
Tssr70410 7 3578244 to 3578248 4 - TSS region transcription start site region 70410
Gm25100 7 3589164 to 3589264 100 + miRNA gene predicted gene, 25100
Gm44920 7 3591646 to 3604150 12504 - lincRNA gene predicted gene 44920
Oscar 7 3609813 to 3616157 6344 - protein coding gene osteoclast associated receptor
Cpgi18216 7 3611135 to 3611297 162 CpG island CpG island 18216
Tssr70411 7 3616105 to 3616116 11 - TSS region transcription start site region 70411
Tssr70412 7 3616135 to 3616152 17 - TSS region transcription start site region 70412
Cpgi18217 7 3617247 to 3617817 570 CpG island CpG island 18217
Tssr64276 7 3617357 to 3617389 32 + TSS region transcription start site region 64276
Ndufa3 7 3617373 to 3620161 2788 + protein coding gene NADH:ubiquinone oxidoreductase subunit A3
Tssr64277 7 3617573 to 3617587 14 + TSS region transcription start site region 64277
Tssr64278 7 3620111 to 3620122 11 + TSS region transcription start site region 64278
Tfpt 7 3620324 to 3629929 9605 - protein coding gene TCF3 (E2A) fusion partner
Cpgi18218 7 3628747 to 3628999 252 CpG island CpG island 18218
Cpgi18219 7 3629469 to 3630131 662 CpG island CpG island 18219
Tssr70413 7 3629577 to 3629616 39 - TSS region transcription start site region 70413
Tssr70414 7 3629874 to 3629924 50 - TSS region transcription start site region 70414
Prpf31 7 3629985 to 3642485 12500 + protein coding gene pre-mRNA processing factor 31
Tssr64279 7 3629985 to 3630037 52 + TSS region transcription start site region 64279
Tssr64280 7 3630045 to 3630056 11 + TSS region transcription start site region 64280
Gm15927 7 3632114 to 3644887 12773 - lncRNA gene predicted gene 15927
Cpgi18220 7 3644854 to 3646257 1403 CpG island CpG island 18220
Tssr64281 7 3645267 to 3645321 54 + TSS region transcription start site region 64281
Cnot3 7 3645269 to 3661109 15840 + protein coding gene CCR4-NOT transcription complex, subunit 3
Tssr64282 7 3645509 to 3645567 58 + TSS region transcription start site region 64282
Mir3572 7 3655962 to 3656047 85 + miRNA gene microRNA 3572
Tssr64283 7 3657735 to 3657740 5 + TSS region transcription start site region 64283
Leng1 7 3660107 to 3665840 5733 - protein coding gene leukocyte receptor cluster (LRC) member 1
Cpgi18221 7 3665161 to 3665783 622 CpG island CpG island 18221
Tssr70415 7 3665444 to 3665488 44 - TSS region transcription start site region 70415
Tmc4 7 3665790 to 3677553 11763 - protein coding gene transmembrane channel-like gene family 4
Gm15929 7 3666252 to 3670278 4026 + antisense lncRNA gene predicted gene 15929
Tssr70416 7 3666917 to 3666941 24 - TSS region transcription start site region 70416
Tssr70417 7 3667190 to 3667240 50 - TSS region transcription start site region 70417
Cpgi18222 7 3671259 to 3671511 252 CpG island CpG island 18222
Tssr70418 7 3677478 to 3677502 24 - TSS region transcription start site region 70418
Tssr70419 7 3677509 to 3677529 20 - TSS region transcription start site region 70419
Tssr70420 7 3677531 to 3677553 22 - TSS region transcription start site region 70420
Mboat7 7 3677789 to 3693523 15734 - protein coding gene membrane bound O-acyltransferase domain containing 7
Tssr70421 7 3685917 to 3685984 67 - TSS region transcription start site region 70421
Cpgi18223 7 3692399 to 3694966 2567 CpG island CpG island 18223
Tssr70422 7 3692761 to 3692828 67 - TSS region transcription start site region 70422
Tssr70423 7 3692906 to 3693032 126 - TSS region transcription start site region 70423
Tssr70424 7 3693139 to 3693194 55 - TSS region transcription start site region 70424
Tsen34 7 3693436 to 3701035 7599 + protein coding gene tRNA splicing endonuclease subunit 34
Tssr70425 7 3693533 to 3693552 19 - TSS region transcription start site region 70425
Tssr70426 7 3693554 to 3693579 25 - TSS region transcription start site region 70426
Tssr64284 7 3693723 to 3693815 92 + TSS region transcription start site region 64284
Tssr64285 7 3694512 to 3694552 40 + TSS region transcription start site region 64285
Tssr64286 7 3694587 to 3694590 3 + TSS region transcription start site region 64286
Cpgi18224 7 3703799 to 3704829 1030 CpG island CpG island 18224
Tssr70427 7 3703900 to 3703931 31 - TSS region transcription start site region 70427
Tssr64287 7 3703979 to 3704024 45 + TSS region transcription start site region 64287
Rps9 7 3703993 to 3706897 2904 + protein coding gene ribosomal protein S9
Tssr64288 7 3704025 to 3704051 26 + TSS region transcription start site region 64288
Tssr64289 7 3704199 to 3704248 49 + TSS region transcription start site region 64289
Tssr64290 7 3704307 to 3704334 27 + TSS region transcription start site region 64290
Tssr64291 7 3704556 to 3704586 30 + TSS region transcription start site region 64291
Tssr64292 7 3704678 to 3704691 13 + TSS region transcription start site region 64292
Tssr64293 7 3705025 to 3705042 17 + TSS region transcription start site region 64293
Tssr64294 7 3705715 to 3705739 24 + TSS region transcription start site region 64294
Tssr70428 7 3706766 to 3706795 29 - TSS region transcription start site region 70428
Pirb 7 3712505 to 3720447 7942 - protein coding gene paired Ig-like receptor B
Tssr64295 7 3712581 to 3712585 4 + TSS region transcription start site region 64295