Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:30612210-30812227

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Upk1a 7 30603092 to 30612734 9642 - protein coding gene uroplakin 1A
Tssr71818 7 30612731 to 30612744 13 - TSS region transcription start site region 71818
Tssr71819 7 30612761 to 30612771 10 - TSS region transcription start site region 71819
Tssr71820 7 30612797 to 30612881 84 - TSS region transcription start site region 71820
Tssr71821 7 30613861 to 30613865 4 - TSS region transcription start site region 71821
Cox6b1 7 30616974 to 30626151 9177 - protein coding gene cytochrome c oxidase, subunit 6B1
Tssr71822 7 30620902 to 30620907 5 - TSS region transcription start site region 71822
Tssr71823 7 30624534 to 30624570 36 - TSS region transcription start site region 71823
Cpgi18815 7 30625646 to 30626349 703 CpG island CpG island 18815
Tssr71824 7 30626079 to 30626122 43 - TSS region transcription start site region 71824
Tssr71825 7 30626124 to 30626126 2 - TSS region transcription start site region 71825
Tssr71826 7 30626127 to 30626139 12 - TSS region transcription start site region 71826
Tssr71827 7 30626145 to 30626164 19 - TSS region transcription start site region 71827
Cpgi18816 7 30633587 to 30634247 660 CpG island CpG island 18816
Etv2 7 30633616 to 30635852 2236 - protein coding gene ets variant 2
Cpgi18817 7 30634656 to 30635125 469 CpG island CpG island 18817
Tssr71828 7 30634747 to 30634772 25 - TSS region transcription start site region 71828
Tssr71829 7 30636514 to 30636529 15 - TSS region transcription start site region 71829
4921520E09Rik 7 30636629 to 30638412 1783 unclassified gene RIKEN cDNA 4921520E09 gene
Rbm42 7 30640995 to 30650228 9233 - protein coding gene RNA binding motif protein 42
Gm21982 7 30641001 to 30664937 23936 - unclassified non-coding RNA gene predicted gene 21982
Cpgi18818 7 30649622 to 30650490 868 CpG island CpG island 18818
Tssr71830 7 30649996 to 30650011 15 - TSS region transcription start site region 71830
Tssr71831 7 30650107 to 30650122 15 - TSS region transcription start site region 71831
Tssr71832 7 30650123 to 30650182 59 - TSS region transcription start site region 71832
Gm26610 7 30650385 to 30652711 2326 + lincRNA gene predicted gene, 26610
Tssr65795 7 30650411 to 30650439 28 + TSS region transcription start site region 65795
Haus5 7 30653711 to 30664994 11283 - protein coding gene HAUS augmin-like complex, subunit 5
Tssr71833 7 30660236 to 30660248 12 - TSS region transcription start site region 71833
Tssr71834 7 30660250 to 30660263 13 - TSS region transcription start site region 71834
Cpgi18819 7 30664692 to 30665164 472 CpG island CpG island 18819
Tssr71835 7 30664941 to 30664984 43 - TSS region transcription start site region 71835
Tssr71836 7 30664986 to 30664999 13 - TSS region transcription start site region 71836
Pmis2 7 30670722 to 30671605 883 - protein coding gene Pmis2, sperm specific protein
Tssr71837 7 30671541 to 30671544 3 - TSS region transcription start site region 71837
Tssr71838 7 30671556 to 30671566 10 - TSS region transcription start site region 71838
Tssr71839 7 30671571 to 30671594 23 - TSS region transcription start site region 71839
Tssr71840 7 30671595 to 30671618 23 - TSS region transcription start site region 71840
Tssr71841 7 30671626 to 30671629 3 - TSS region transcription start site region 71841
Tssr2187 7 30671644 to 30671649 5 - TSS region transcription start site region 2187
2200002J24Rik 7 30698926 to 30700536 1610 + protein coding gene RIKEN cDNA 2200002J24 gene
Tssr65796 7 30698934 to 30698947 13 + TSS region transcription start site region 65796
Gm4883 7 30709736 to 30710263 527 + pseudogene predicted gene 4883
Atp4a 7 30712209 to 30725534 13325 + protein coding gene ATPase, H+/K+ exchanging, gastric, alpha polypeptide
Tssr65797 7 30712210 to 30712227 17 + TSS region transcription start site region 65797
Tssr65798 7 30715872 to 30715893 21 + TSS region transcription start site region 65798
Cpgi18820 7 30716914 to 30717904 990 CpG island CpG island 18820
Tssr65799 7 30720281 to 30720290 9 + TSS region transcription start site region 65799
Tssr65800 7 30722486 to 30722505 19 + TSS region transcription start site region 65800
Tssr65801 7 30722604 to 30722612 8 + TSS region transcription start site region 65801
Tmem147 7 30727701 to 30729534 1833 - protein coding gene transmembrane protein 147
Tssr71842 7 30728812 to 30728837 25 - TSS region transcription start site region 71842
Cpgi18821 7 30729086 to 30730012 926 CpG island CpG island 18821
Tssr71843 7 30729435 to 30729453 18 - TSS region transcription start site region 71843
Tssr71844 7 30729468 to 30729501 33 - TSS region transcription start site region 71844
Tssr71845 7 30729505 to 30729556 51 - TSS region transcription start site region 71845
Tssr65802 7 30729563 to 30729643 80 + TSS region transcription start site region 65802
Tmem147os 7 30729579 to 30745929 16350 + antisense lncRNA gene transmembrane protein 147, opposite strand
Tssr65803 7 30729709 to 30729759 50 + TSS region transcription start site region 65803
Gapdhs 7 30729775 to 30743681 13906 - protein coding gene glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Tssr65804 7 30729795 to 30729806 11 + TSS region transcription start site region 65804
Tssr65805 7 30731174 to 30731177 3 + TSS region transcription start site region 65805
Tssr71846 7 30736959 to 30736963 4 - TSS region transcription start site region 71846
Gm26935 7 30737653 to 30748437 10784 + antisense lncRNA gene predicted gene, 26935
Tssr71847 7 30737843 to 30737867 24 - TSS region transcription start site region 71847
Tssr65806 7 30737886 to 30737913 27 + TSS region transcription start site region 65806
Tssr71848 7 30737932 to 30737939 7 - TSS region transcription start site region 71848
Tssr71849 7 30737948 to 30737974 26 - TSS region transcription start site region 71849
Tssr65807 7 30737959 to 30737988 29 + TSS region transcription start site region 65807
Tssr71850 7 30737982 to 30737991 9 - TSS region transcription start site region 71850
Tssr2188 7 30743704 to 30743731 27 - TSS region transcription start site region 2188
Tssr71851 7 30743765 to 30743776 11 - TSS region transcription start site region 71851
Tssr71852 7 30744127 to 30744140 13 - TSS region transcription start site region 71852
Tssr71853 7 30744169 to 30744199 30 - TSS region transcription start site region 71853
Tssr71854 7 30744201 to 30744214 13 - TSS region transcription start site region 71854
Tssr71855 7 30744217 to 30744230 13 - TSS region transcription start site region 71855
Sbsn 7 30751471 to 30756134 4663 + protein coding gene suprabasin
Tssr65808 7 30751526 to 30751543 17 + TSS region transcription start site region 65808
Tssr71856 7 30752157 to 30752190 33 - TSS region transcription start site region 71856
Tssr65809 7 30763750 to 30763765 15 + TSS region transcription start site region 65809
Dmkn 7 30763756 to 30781063 17307 + protein coding gene dermokine
Tssr65810 7 30764789 to 30764802 13 + TSS region transcription start site region 65810
Cpgi18822 7 30765359 to 30765579 220 CpG island CpG island 18822
Tssr65811 7 30765406 to 30765450 44 + TSS region transcription start site region 65811
Tssr65812 7 30766573 to 30766576 3 + TSS region transcription start site region 65812
Tssr65813 7 30776394 to 30776410 16 + TSS region transcription start site region 65813
Tssr65814 7 30787897 to 30787912 15 + TSS region transcription start site region 65814
Krtdap 7 30787905 to 30791083 3178 + protein coding gene keratinocyte differentiation associated protein
Tssr65815 7 30789704 to 30789708 4 + TSS region transcription start site region 65815