Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:29419062-30689066

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533 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sipa1l3 7 29320372 to 29518641 198269 - protein coding gene signal-induced proliferation-associated 1 like 3
D7Mit116 7 29432519 to 29432601 82 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 116
Tssr71658 7 29443550 to 29443552 2 - TSS region transcription start site region 71658
Tssr65632 7 29446385 to 29446394 9 + TSS region transcription start site region 65632
Tssr71659 7 29481614 to 29481621 7 - TSS region transcription start site region 71659
Tssr71660 7 29505333 to 29505445 112 - TSS region transcription start site region 71660
Tssr71661 7 29505447 to 29505473 26 - TSS region transcription start site region 71661
Tssr71662 7 29505563 to 29505579 16 - TSS region transcription start site region 71662
Tssr71663 7 29505728 to 29505748 20 - TSS region transcription start site region 71663
Tssr71664 7 29505754 to 29505765 11 - TSS region transcription start site region 71664
Tssr71665 7 29505775 to 29505790 15 - TSS region transcription start site region 71665
Tssr71666 7 29505792 to 29505822 30 - TSS region transcription start site region 71666
Tssr71667 7 29505914 to 29505917 3 - TSS region transcription start site region 71667
Cpgi18761 7 29518043 to 29519691 1648 CpG island CpG island 18761
Tssr71668 7 29518536 to 29518541 5 - TSS region transcription start site region 71668
Tssr71669 7 29518542 to 29518565 23 - TSS region transcription start site region 71669
Tssr71670 7 29518566 to 29518620 54 - TSS region transcription start site region 71670
Tssr65633 7 29519146 to 29519156 10 + TSS region transcription start site region 65633
Tssr65634 7 29519158 to 29519169 11 + TSS region transcription start site region 65634
4932431P20Rik 7 29524543 to 29538055 13512 + pseudogene RIKEN cDNA 4932431P20 gene
Tssr65635 7 29534407 to 29534414 7 + TSS region transcription start site region 65635
Tssr65636 7 29535030 to 29535063 33 + TSS region transcription start site region 65636
D7Mit267 7 29546946 to 29547137 191 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 267
ru2l 7 29546946 to 49509583 19962637 heritable phenotypic marker ruby-eye 2-like
Spmo2 7 29546946 to 29547137 191 QTL sperm mobility 2
4930544L20Rik 7 29552159 to 29553027 868 unclassified gene RIKEN cDNA 4930544L20 gene
Gm38982 7 29553467 to 29555628 2161 - lncRNA gene predicted gene, 38982
Tssr71671 7 29555588 to 29555598 10 - TSS region transcription start site region 71671
Tssr71672 7 29555599 to 29555614 15 - TSS region transcription start site region 71672
Tssr71673 7 29555638 to 29555647 9 - TSS region transcription start site region 71673
Tssr71674 7 29556516 to 29556519 3 - TSS region transcription start site region 71674
4930432E11Rik 7 29556615 to 29576779 20164 + pseudogene RIKEN cDNA 4930432E11 gene
Gm29326 7 29560365 to 29562815 2450 - lincRNA gene predicted gene 29326
A330087D11Rik 7 29568903 to 29573928 5025 - lincRNA gene RIKEN cDNA A330087D11 gene
Gm45978 7 29619477 to 29622580 3103 + protein coding gene predicted gene, 45978
n-R5s153 7 29657161 to 29657276 115 - rRNA gene nuclear encoded rRNA 5S 153
Catsperg2 7 29697219 to 29727032 29813 - protein coding gene cation channel sperm associated auxiliary subunit gamma 2
Tssr71675 7 29726966 to 29726985 19 - TSS region transcription start site region 71675
Tssr71676 7 29726991 to 29727007 16 - TSS region transcription start site region 71676
Gm23103 7 29737318 to 29737424 106 - snRNA gene predicted gene, 23103
Gm38983 7 29763788 to 29768417 4629 - lncRNA gene predicted gene, 38983
Gm44954 7 29764437 to 29764663 226 - pseudogene predicted gene 44954
Cpgi18762 7 29768462 to 29768989 527 CpG island CpG island 18762
Tssr65637 7 29768534 to 29768543 9 + TSS region transcription start site region 65637
Tssr65638 7 29768546 to 29768559 13 + TSS region transcription start site region 65638
Zfp84 7 29768552 to 29779821 11269 + protein coding gene zinc finger protein 84
Tssr65639 7 29768568 to 29768642 74 + TSS region transcription start site region 65639
Tssr65640 7 29768643 to 29768650 7 + TSS region transcription start site region 65640
Mir1964 7 29773294 to 29773376 82 + miRNA gene microRNA 1964
Eosn3 7 29781452 to 29781452 0 QTL eosinophil differential 3
Eosn1 7 29781452 to 29781452 0 QTL eosinophil differential 1
Cpgi18763 7 29783775 to 29784564 789 CpG island CpG island 18763
Tssr65641 7 29783958 to 29784028 70 + TSS region transcription start site region 65641
Zfp30 7 29783998 to 29794702 10704 + protein coding gene zinc finger protein 30
Cpgi18764 7 29792722 to 29793636 914 CpG island CpG island 18764
Gm6579 7 29798712 to 29799796 1084 - pseudogene predicted gene 6579
Tssr71677 7 29799871 to 29799879 8 - TSS region transcription start site region 71677
Cpgi18765 7 29815834 to 29816418 584 CpG island CpG island 18765
Tssr65642 7 29816061 to 29816153 92 + TSS region transcription start site region 65642
Zfp790 7 29816114 to 29831005 14891 + protein coding gene zinc finger protein 790
Zfp940 7 29843936 to 29853753 9817 - protein coding gene zinc finger protein 940
Gm26554 7 29853085 to 29858990 5905 + antisense lncRNA gene predicted gene, 26554
Cpgi18766 7 29853450 to 29853807 357 CpG island CpG island 18766
Tssr71678 7 29853595 to 29853609 14 - TSS region transcription start site region 71678
Tssr71679 7 29853611 to 29853683 72 - TSS region transcription start site region 71679
Gm17199 7 29855640 to 29856055 415 - pseudogene predicted gene 17199
Cpgi18767 7 29859883 to 29860338 455 CpG island CpG island 18767
Tssr65643 7 29859966 to 29860053 87 + TSS region transcription start site region 65643
Zfp420 7 29859979 to 29877292 17313 + protein coding gene zinc finger protein 420
Tssr65644 7 29860099 to 29860121 22 + TSS region transcription start site region 65644
D7Mit210 7 29863922 to 29864009 87 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 210
2900035I09Rik 7 29890155 to 29892587 2432 unclassified non-coding RNA gene RIKEN cDNA 2900035I09 gene
Zfp27 7 29893331 to 29906570 13239 - protein coding gene zinc finger protein 27
Cpgi18768 7 29894220 to 29894775 555 CpG island CpG island 18768
Tssr71680 7 29906087 to 29906137 50 - TSS region transcription start site region 71680
Cpgi18769 7 29906185 to 29906449 264 CpG island CpG island 18769
Mir7668 7 29906509 to 29906567 58 + miRNA gene microRNA 7668
Tssr71681 7 29906524 to 29906567 43 - TSS region transcription start site region 71681
Zfp383 7 29908281 to 29916813 8532 + protein coding gene zinc finger protein 383
Cpgi18770 7 29908335 to 29908784 449 CpG island CpG island 18770
Tssr65645 7 29908492 to 29908573 81 + TSS region transcription start site region 65645
D7Mit117 7 29926306 to 29926453 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 117
D7Dcr3 7 29926316 to 29926414 98 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 3
Gm44873 7 29926978 to 29930405 3427 + unclassified gene predicted gene 44873
Zfp74 7 29932661 to 29954441 21780 - protein coding gene zinc finger protein 74
Tssr65646 7 29941449 to 29941454 5 + TSS region transcription start site region 65646
Tssr65647 7 29941545 to 29941575 30 + TSS region transcription start site region 65647
Tssr71682 7 29943747 to 29943757 10 - TSS region transcription start site region 71682
Tssr65648 7 29943989 to 29944001 12 + TSS region transcription start site region 65648
Tssr65649 7 29944557 to 29944596 39 + TSS region transcription start site region 65649
Cpgi18771 7 29953465 to 29954132 667 CpG island CpG island 18771
Tssr71683 7 29953870 to 29953900 30 - TSS region transcription start site region 71683
Tssr71684 7 29954049 to 29954089 40 - TSS region transcription start site region 71684
C230062I16Rik 7 29960893 to 29969664 8771 + unclassified non-coding RNA gene RIKEN cDNA C230062I16 gene
Gm10169 7 29965218 to 29965565 347 - pseudogene predicted pseudogene 10169
Gm31735 7 29970602 to 29983761 13159 - lncRNA gene predicted gene, 31735
Tssr65650 7 29982122 to 29982133 11 + TSS region transcription start site region 65650
Cpgi18772 7 29983575 to 29984469 894 CpG island CpG island 18772
Tssr65651 7 29983917 to 29983942 25 + TSS region transcription start site region 65651
Tssr65652 7 29983948 to 29983964 16 + TSS region transcription start site region 65652
Zfp568 7 29983955 to 30028282 44327 + protein coding gene zinc finger protein 568
Tssr65653 7 29983976 to 29983988 12 + TSS region transcription start site region 65653
Cpgi18773 7 30034467 to 30034631 164 CpG island CpG island 18773
Zfp14 7 30036359 to 30051380 15021 - protein coding gene zinc finger protein 14
Cpgi18774 7 30050939 to 30051534 595 CpG island CpG island 18774
Tssr71685 7 30051361 to 30051411 50 - TSS region transcription start site region 71685
Tssr65654 7 30054062 to 30054066 4 + TSS region transcription start site region 65654
Gm26920 7 30056034 to 30090410 34376 - protein coding gene predicted gene, 26920
Zfp82 7 30056034 to 30072823 16789 - protein coding gene zinc finger protein 82
Cpgi18775 7 30072176 to 30073067 891 CpG island CpG island 18775
Tssr71686 7 30072872 to 30072924 52 - TSS region transcription start site region 71686
Zfp566 7 30077337 to 30090510 13173 - protein coding gene zinc finger protein 566
Gm44872 7 30085468 to 30085887 419 + pseudogene predicted gene 44872
Cpgi18776 7 30090097 to 30090711 614 CpG island CpG island 18776
Tssr71687 7 30090399 to 30090435 36 - TSS region transcription start site region 71687
Tssr71688 7 30090471 to 30090536 65 - TSS region transcription start site region 71688
Zfp260 7 30094782 to 30107622 12840 + protein coding gene zinc finger protein 260
Cpgi18777 7 30095108 to 30095325 217 CpG island CpG island 18777
Tssr65655 7 30095150 to 30095192 42 + TSS region transcription start site region 65655
A430042F24Rik 7 30096814 to 30097914 1100 unclassified gene RIKEN cDNA A430042F24 gene
Tssr65656 7 30099557 to 30099614 57 + TSS region transcription start site region 65656
Gm23368 7 30100840 to 30100935 95 - miRNA gene predicted gene, 23368
Tssr2181 7 30100841 to 30100843 2 + TSS region transcription start site region 2181
Cpgi18778 7 30121517 to 30122405 888 CpG island CpG island 18778
Tssr65657 7 30121915 to 30122001 86 + TSS region transcription start site region 65657
Zfp382 7 30121942 to 30134950 13008 + protein coding gene zinc finger protein 382
4930428B01Rik 7 30139913 to 30140746 833 unclassified gene RIKEN cDNA 4930428B01 gene
Cpgi18779 7 30143468 to 30144023 555 CpG island CpG island 18779
Gm10988 7 30151841 to 30152928 1087 + pseudogene predicted gene 10988
8430406M14Rik 7 30160488 to 30160784 296 unclassified gene RIKEN cDNA 8430406M14 gene
Zfp146 7 30161269 to 30169750 8481 - protein coding gene zinc finger protein 146
Cpgi18780 7 30169335 to 30170050 715 CpG island CpG island 18780
Tssr71689 7 30169681 to 30169696 15 - TSS region transcription start site region 71689
Tssr71690 7 30169701 to 30169766 65 - TSS region transcription start site region 71690
Tssr65658 7 30169861 to 30169912 51 + TSS region transcription start site region 65658
Gm5113 7 30169922 to 30180209 10287 + protein coding gene predicted gene 5113
Tssr65659 7 30184160 to 30184181 21 + TSS region transcription start site region 65659
Cox7a1 7 30184171 to 30186030 1859 + protein coding gene cytochrome c oxidase subunit 7A1
Tssr65660 7 30184186 to 30184211 25 + TSS region transcription start site region 65660
Tssr65661 7 30184212 to 30184216 4 + TSS region transcription start site region 65661
Capns1 7 30186942 to 30198794 11852 - protein coding gene calpain, small subunit 1
Tssr71691 7 30187268 to 30187284 16 - TSS region transcription start site region 71691
Tssr71692 7 30187392 to 30187409 17 - TSS region transcription start site region 71692
Tssr71693 7 30187478 to 30187516 38 - TSS region transcription start site region 71693
Tssr71694 7 30190119 to 30190140 21 - TSS region transcription start site region 71694
Tssr71695 7 30190690 to 30190738 48 - TSS region transcription start site region 71695
Cpgi18781 7 30192839 to 30193029 190 CpG island CpG island 18781
Tssr71696 7 30192906 to 30192930 24 - TSS region transcription start site region 71696
Tssr71697 7 30192944 to 30192951 7 - TSS region transcription start site region 71697
Tssr71698 7 30192968 to 30192982 14 - TSS region transcription start site region 71698
Tssr71699 7 30193098 to 30193108 10 - TSS region transcription start site region 71699
Tssr71700 7 30193120 to 30193143 23 - TSS region transcription start site region 71700
Tssr71701 7 30193338 to 30193367 29 - TSS region transcription start site region 71701
Cpgi18782 7 30193787 to 30194041 254 CpG island CpG island 18782
Tssr71702 7 30193794 to 30193819 25 - TSS region transcription start site region 71702
Tssr65662 7 30193929 to 30193957 28 + TSS region transcription start site region 65662
Gm26810 7 30193954 to 30200889 6935 + antisense lncRNA gene predicted gene, 26810
Tssr71703 7 30194000 to 30194033 33 - TSS region transcription start site region 71703
Tssr71704 7 30194094 to 30194140 46 - TSS region transcription start site region 71704
Tssr71705 7 30194152 to 30194162 10 - TSS region transcription start site region 71705
Cpgi18783 7 30194479 to 30195316 837 CpG island CpG island 18783
Tssr71706 7 30195020 to 30195031 11 - TSS region transcription start site region 71706
Tssr71707 7 30195032 to 30195043 11 - TSS region transcription start site region 71707
Tssr71708 7 30195046 to 30195090 44 - TSS region transcription start site region 71708
Tssr71709 7 30195221 to 30195225 4 - TSS region transcription start site region 71709
Tssr71710 7 30195563 to 30195569 6 - TSS region transcription start site region 71710
Tssr71711 7 30198819 to 30198843 24 - TSS region transcription start site region 71711
Tssr71712 7 30198851 to 30198879 28 - TSS region transcription start site region 71712
Gm44600 7 30212628 to 30212738 110 - pseudogene predicted gene 44600
Cpgi18784 7 30216848 to 30217107 259 CpG island CpG island 18784
Tssr71713 7 30216926 to 30216933 7 - TSS region transcription start site region 71713
Tbcb 7 30224130 to 30232029 7899 - protein coding gene tubulin folding cofactor B
Cpgi18785 7 30231421 to 30233095 1674 CpG island CpG island 18785
Tssr71714 7 30231705 to 30231716 11 - TSS region transcription start site region 71714
Tssr71715 7 30231722 to 30231790 68 - TSS region transcription start site region 71715
Tssr65663 7 30231884 to 30231901 17 + TSS region transcription start site region 65663
Tssr65664 7 30232033 to 30232050 17 + TSS region transcription start site region 65664
Polr2i 7 30232074 to 30233387 1313 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide I
Tssr71716 7 30232186 to 30232205 19 - TSS region transcription start site region 71716
Tssr65665 7 30232310 to 30232350 40 + TSS region transcription start site region 65665
Ovol3 7 30233439 to 30235725 2286 - protein coding gene ovo like zinc finger 3
Wdr62 7 30240138 to 30280419 40281 - protein coding gene WD repeat domain 62
Tssr71717 7 30242863 to 30242871 8 - TSS region transcription start site region 71717
Tssr71718 7 30242875 to 30242882 7 - TSS region transcription start site region 71718
Tssr71719 7 30243499 to 30243535 36 - TSS region transcription start site region 71719
Tssr65666 7 30263174 to 30263179 5 + TSS region transcription start site region 65666
Rps12-ps5 7 30263263 to 30263651 388 + pseudogene ribosomal protein S12, pseudogene 5
Tssr71720 7 30263955 to 30263958 3 - TSS region transcription start site region 71720
Cpgi18786 7 30279736 to 30281020 1284 CpG island CpG island 18786
Tssr65667 7 30280087 to 30280142 55 + TSS region transcription start site region 65667
Thap8 7 30280094 to 30290237 10143 + protein coding gene THAP domain containing 8
Tssr65668 7 30280186 to 30280188 2 + TSS region transcription start site region 65668
Tssr71721 7 30280335 to 30280424 89 - TSS region transcription start site region 71721
Tssr65669 7 30280534 to 30280584 50 + TSS region transcription start site region 65669
Cpgi18787 7 30291516 to 30292020 504 CpG island CpG island 18787
Tssr65670 7 30291659 to 30291768 109 + TSS region transcription start site region 65670
Clip3 7 30291728 to 30308367 16639 + protein coding gene CAP-GLY domain containing linker protein 3
Tssr65671 7 30291771 to 30291779 8 + TSS region transcription start site region 65671
Tssr65672 7 30291784 to 30291787 3 + TSS region transcription start site region 65672
Tssr65673 7 30291803 to 30291807 4 + TSS region transcription start site region 65673