Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:29379477-29862580

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sipa1l3 7 29320372 to 29518641 198269 - protein coding gene signal-induced proliferation-associated 1 like 3
Cpgi18760 7 29397066 to 29397283 217 CpG island CpG island 18760
Tssr71657 7 29397678 to 29397709 31 - TSS region transcription start site region 71657
D7Mit116 7 29432519 to 29432601 82 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 116
Tssr71658 7 29443550 to 29443552 2 - TSS region transcription start site region 71658
Tssr65632 7 29446385 to 29446394 9 + TSS region transcription start site region 65632
Tssr71659 7 29481614 to 29481621 7 - TSS region transcription start site region 71659
Tssr71660 7 29505333 to 29505445 112 - TSS region transcription start site region 71660
Tssr71661 7 29505447 to 29505473 26 - TSS region transcription start site region 71661
Tssr71662 7 29505563 to 29505579 16 - TSS region transcription start site region 71662
Tssr71663 7 29505728 to 29505748 20 - TSS region transcription start site region 71663
Tssr71664 7 29505754 to 29505765 11 - TSS region transcription start site region 71664
Tssr71665 7 29505775 to 29505790 15 - TSS region transcription start site region 71665
Tssr71666 7 29505792 to 29505822 30 - TSS region transcription start site region 71666
Tssr71667 7 29505914 to 29505917 3 - TSS region transcription start site region 71667
Cpgi18761 7 29518043 to 29519691 1648 CpG island CpG island 18761
Tssr71668 7 29518536 to 29518541 5 - TSS region transcription start site region 71668
Tssr71669 7 29518542 to 29518565 23 - TSS region transcription start site region 71669
Tssr71670 7 29518566 to 29518620 54 - TSS region transcription start site region 71670
Tssr65633 7 29519146 to 29519156 10 + TSS region transcription start site region 65633
Tssr65634 7 29519158 to 29519169 11 + TSS region transcription start site region 65634
4932431P20Rik 7 29524543 to 29538055 13512 + pseudogene RIKEN cDNA 4932431P20 gene
Tssr65635 7 29534407 to 29534414 7 + TSS region transcription start site region 65635
Tssr65636 7 29535030 to 29535063 33 + TSS region transcription start site region 65636
D7Mit267 7 29546946 to 29547137 191 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 267
ru2l 7 29546946 to 49509583 19962637 heritable phenotypic marker ruby-eye 2-like
Spmo2 7 29546946 to 29547137 191 QTL sperm mobility 2
4930544L20Rik 7 29552159 to 29553027 868 unclassified gene RIKEN cDNA 4930544L20 gene
Gm38982 7 29553467 to 29555628 2161 - lncRNA gene predicted gene, 38982
Tssr71671 7 29555588 to 29555598 10 - TSS region transcription start site region 71671
Tssr71672 7 29555599 to 29555614 15 - TSS region transcription start site region 71672
Tssr71673 7 29555638 to 29555647 9 - TSS region transcription start site region 71673
Tssr71674 7 29556516 to 29556519 3 - TSS region transcription start site region 71674
4930432E11Rik 7 29556615 to 29576779 20164 + pseudogene RIKEN cDNA 4930432E11 gene
Gm29326 7 29560365 to 29562815 2450 - lincRNA gene predicted gene 29326
A330087D11Rik 7 29568903 to 29573928 5025 - lincRNA gene RIKEN cDNA A330087D11 gene
Gm45978 7 29619477 to 29622580 3103 + protein coding gene predicted gene, 45978
n-R5s153 7 29657161 to 29657276 115 - rRNA gene nuclear encoded rRNA 5S 153
Catsperg2 7 29697219 to 29727032 29813 - protein coding gene cation channel sperm associated auxiliary subunit gamma 2
Tssr71675 7 29726966 to 29726985 19 - TSS region transcription start site region 71675
Tssr71676 7 29726991 to 29727007 16 - TSS region transcription start site region 71676
Gm23103 7 29737318 to 29737424 106 - snRNA gene predicted gene, 23103
Gm38983 7 29763788 to 29768417 4629 - lncRNA gene predicted gene, 38983
Gm44954 7 29764437 to 29764663 226 - pseudogene predicted gene 44954
Cpgi18762 7 29768462 to 29768989 527 CpG island CpG island 18762
Tssr65637 7 29768534 to 29768543 9 + TSS region transcription start site region 65637
Tssr65638 7 29768546 to 29768559 13 + TSS region transcription start site region 65638
Zfp84 7 29768552 to 29779821 11269 + protein coding gene zinc finger protein 84
Tssr65639 7 29768568 to 29768642 74 + TSS region transcription start site region 65639
Tssr65640 7 29768643 to 29768650 7 + TSS region transcription start site region 65640
Mir1964 7 29773294 to 29773376 82 + miRNA gene microRNA 1964
Eosn3 7 29781452 to 29781452 0 QTL eosinophil differential 3
Eosn1 7 29781452 to 29781452 0 QTL eosinophil differential 1
Cpgi18763 7 29783775 to 29784564 789 CpG island CpG island 18763
Tssr65641 7 29783958 to 29784028 70 + TSS region transcription start site region 65641
Zfp30 7 29783998 to 29794702 10704 + protein coding gene zinc finger protein 30
Cpgi18764 7 29792722 to 29793636 914 CpG island CpG island 18764
Gm6579 7 29798712 to 29799796 1084 - pseudogene predicted gene 6579
Tssr71677 7 29799871 to 29799879 8 - TSS region transcription start site region 71677
Cpgi18765 7 29815834 to 29816418 584 CpG island CpG island 18765
Tssr65642 7 29816061 to 29816153 92 + TSS region transcription start site region 65642
Zfp790 7 29816114 to 29831005 14891 + protein coding gene zinc finger protein 790
Zfp940 7 29843936 to 29853753 9817 - protein coding gene zinc finger protein 940
Gm26554 7 29853085 to 29858990 5905 + antisense lncRNA gene predicted gene, 26554
Cpgi18766 7 29853450 to 29853807 357 CpG island CpG island 18766
Tssr71678 7 29853595 to 29853609 14 - TSS region transcription start site region 71678
Tssr71679 7 29853611 to 29853683 72 - TSS region transcription start site region 71679
Gm17199 7 29855640 to 29856055 415 - pseudogene predicted gene 17199
Cpgi18767 7 29859883 to 29860338 455 CpG island CpG island 18767
Tssr65643 7 29859966 to 29860053 87 + TSS region transcription start site region 65643
Zfp420 7 29859979 to 29877292 17313 + protein coding gene zinc finger protein 420
Tssr65644 7 29860099 to 29860121 22 + TSS region transcription start site region 65644