Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:29188903-29953928

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Catsperg1 7 29181321 to 29214035 32714 - protein coding gene cation channel sperm associated auxiliary subunit gamma 1
Cpgi18747 7 29211508 to 29212126 618 CpG island CpG island 18747
Cpgi18748 7 29212496 to 29213182 686 CpG island CpG island 18748
Cpgi18749 7 29213752 to 29213958 206 CpG island CpG island 18749
Tssr71630 7 29213957 to 29213983 26 - TSS region transcription start site region 71630
Kcnk6 7 29221926 to 29232515 10589 - protein coding gene potassium inwardly-rectifying channel, subfamily K, member 6
Cpgi18750 7 29225045 to 29225341 296 CpG island CpG island 18750
Cpgi18751 7 29231958 to 29232839 881 CpG island CpG island 18751
Tssr71631 7 29232451 to 29232471 20 - TSS region transcription start site region 71631
Tssr71632 7 29232478 to 29232527 49 - TSS region transcription start site region 71632
Tssr71633 7 29232537 to 29232610 73 - TSS region transcription start site region 71633
Cpgi18752 7 29237953 to 29238862 909 CpG island CpG island 18752
Tssr71634 7 29238099 to 29238106 7 - TSS region transcription start site region 71634
Tssr65612 7 29238304 to 29238315 11 + TSS region transcription start site region 65612
Tssr65613 7 29238323 to 29238394 71 + TSS region transcription start site region 65613
Yif1b 7 29238329 to 29247597 9268 + protein coding gene Yip1 interacting factor homolog B (S. cerevisiae)
Tssr65614 7 29238434 to 29238456 22 + TSS region transcription start site region 65614
Tssr65615 7 29238478 to 29238507 29 + TSS region transcription start site region 65615
Tssr65616 7 29238510 to 29238557 47 + TSS region transcription start site region 65616
Tssr65617 7 29245739 to 29245750 11 + TSS region transcription start site region 65617
Tssr71635 7 29247122 to 29247138 16 - TSS region transcription start site region 71635
Cpgi18753 7 29247235 to 29248186 951 CpG island CpG island 18753
2200002D01Rik 7 29247521 to 29248467 946 - protein coding gene RIKEN cDNA 2200002D01 gene
Tssr65618 7 29247635 to 29247670 35 + TSS region transcription start site region 65618
Tssr71636 7 29247726 to 29247745 19 - TSS region transcription start site region 71636
Tssr71637 7 29247926 to 29247939 13 - TSS region transcription start site region 71637
Tssr71638 7 29247944 to 29247972 28 - TSS region transcription start site region 71638
Tssr71639 7 29248375 to 29248424 49 - TSS region transcription start site region 71639
Tssr71640 7 29248457 to 29248468 11 - TSS region transcription start site region 71640
Tssr71641 7 29248511 to 29248533 22 - TSS region transcription start site region 71641
Spint2 7 29256323 to 29281912 25589 - protein coding gene serine protease inhibitor, Kunitz type 2
Tssr71642 7 29256412 to 29256416 4 - TSS region transcription start site region 71642
Tssr71643 7 29256491 to 29256594 103 - TSS region transcription start site region 71643
Tssr71644 7 29258540 to 29258575 35 - TSS region transcription start site region 71644
Cpgi18754 7 29281206 to 29282372 1166 CpG island CpG island 18754
Tssr2177 7 29281580 to 29281595 15 - TSS region transcription start site region 2177
Tssr71645 7 29281616 to 29281688 72 - TSS region transcription start site region 71645
Tssr2178 7 29281769 to 29281784 15 - TSS region transcription start site region 2178
Tssr2179 7 29281821 to 29281892 71 - TSS region transcription start site region 2179
Tssr2180 7 29281900 to 29281904 4 - TSS region transcription start site region 2180
Tssr71646 7 29281914 to 29281935 21 - TSS region transcription start site region 71646
Tssr71647 7 29281938 to 29281973 35 - TSS region transcription start site region 71647
Tssr71648 7 29281979 to 29281990 11 - TSS region transcription start site region 71648
Tssr71649 7 29282033 to 29282040 7 - TSS region transcription start site region 71649
Gm45977 7 29283576 to 29288356 4780 - lncRNA gene predicted gene, 45977
Tssr71650 7 29288259 to 29288305 46 - TSS region transcription start site region 71650
Cpgi18755 7 29288992 to 29289795 803 CpG island CpG island 18755
Tssr65619 7 29289278 to 29289285 7 + TSS region transcription start site region 65619
Tssr65620 7 29289300 to 29289324 24 + TSS region transcription start site region 65620
Ppp1r14a 7 29289320 to 29293390 4070 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 14A
Tssr65621 7 29289327 to 29289338 11 + TSS region transcription start site region 65621
Tssr65622 7 29291369 to 29291386 17 + TSS region transcription start site region 65622
Tssr65623 7 29296631 to 29296634 3 + TSS region transcription start site region 65623
Tssr65624 7 29298288 to 29298290 2 + TSS region transcription start site region 65624
Cpgi18756 7 29303614 to 29305389 1775 CpG island CpG island 18756
Tssr65625 7 29303938 to 29303947 9 + TSS region transcription start site region 65625
Tssr65626 7 29303958 to 29303983 25 + TSS region transcription start site region 65626
Dpf1 7 29303959 to 29317592 13633 + protein coding gene D4, zinc and double PHD fingers family 1
Tssr65627 7 29303987 to 29304003 16 + TSS region transcription start site region 65627
Tssr65628 7 29304010 to 29304013 3 + TSS region transcription start site region 65628
Cpgi18757 7 29307457 to 29308426 969 CpG island CpG island 18757
Tssr65629 7 29307974 to 29308057 83 + TSS region transcription start site region 65629
Cpgi18758 7 29309215 to 29309903 688 CpG island CpG island 18758
Tssr65630 7 29309429 to 29309462 33 + TSS region transcription start site region 65630
Gm44632 7 29316770 to 29319402 2632 - antisense lncRNA gene predicted gene 44632
Tssr65631 7 29317287 to 29317296 9 + TSS region transcription start site region 65631
Cpgi18759 7 29318648 to 29318953 305 CpG island CpG island 18759
Sipa1l3 7 29320372 to 29518641 198269 - protein coding gene signal-induced proliferation-associated 1 like 3
Tssr71651 7 29339188 to 29339203 15 - TSS region transcription start site region 71651
Tssr71652 7 29339216 to 29339252 36 - TSS region transcription start site region 71652
Tssr71653 7 29344844 to 29344860 16 - TSS region transcription start site region 71653
Tssr71654 7 29344900 to 29344916 16 - TSS region transcription start site region 71654
Tssr71655 7 29354282 to 29354299 17 - TSS region transcription start site region 71655
Tssr71656 7 29354306 to 29354338 32 - TSS region transcription start site region 71656
Cpgi18760 7 29397066 to 29397283 217 CpG island CpG island 18760
Tssr71657 7 29397678 to 29397709 31 - TSS region transcription start site region 71657
D7Mit116 7 29432519 to 29432601 82 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 116
Tssr71658 7 29443550 to 29443552 2 - TSS region transcription start site region 71658
Tssr65632 7 29446385 to 29446394 9 + TSS region transcription start site region 65632
Tssr71659 7 29481614 to 29481621 7 - TSS region transcription start site region 71659
Tssr71660 7 29505333 to 29505445 112 - TSS region transcription start site region 71660
Tssr71661 7 29505447 to 29505473 26 - TSS region transcription start site region 71661
Tssr71662 7 29505563 to 29505579 16 - TSS region transcription start site region 71662
Tssr71663 7 29505728 to 29505748 20 - TSS region transcription start site region 71663
Tssr71664 7 29505754 to 29505765 11 - TSS region transcription start site region 71664
Tssr71665 7 29505775 to 29505790 15 - TSS region transcription start site region 71665
Tssr71666 7 29505792 to 29505822 30 - TSS region transcription start site region 71666
Tssr71667 7 29505914 to 29505917 3 - TSS region transcription start site region 71667
Cpgi18761 7 29518043 to 29519691 1648 CpG island CpG island 18761
Tssr71668 7 29518536 to 29518541 5 - TSS region transcription start site region 71668
Tssr71669 7 29518542 to 29518565 23 - TSS region transcription start site region 71669
Tssr71670 7 29518566 to 29518620 54 - TSS region transcription start site region 71670
Tssr65633 7 29519146 to 29519156 10 + TSS region transcription start site region 65633
Tssr65634 7 29519158 to 29519169 11 + TSS region transcription start site region 65634
4932431P20Rik 7 29524543 to 29538055 13512 + pseudogene RIKEN cDNA 4932431P20 gene
Tssr65635 7 29534407 to 29534414 7 + TSS region transcription start site region 65635
Tssr65636 7 29535030 to 29535063 33 + TSS region transcription start site region 65636
Spmo2 7 29546946 to 29547137 191 QTL sperm mobility 2
ru2l 7 29546946 to 49509583 19962637 heritable phenotypic marker ruby-eye 2-like
D7Mit267 7 29546946 to 29547137 191 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 267
4930544L20Rik 7 29552159 to 29553027 868 unclassified gene RIKEN cDNA 4930544L20 gene
Gm38982 7 29553467 to 29555628 2161 - lncRNA gene predicted gene, 38982
Tssr71671 7 29555588 to 29555598 10 - TSS region transcription start site region 71671
Tssr71672 7 29555599 to 29555614 15 - TSS region transcription start site region 71672
Tssr71673 7 29555638 to 29555647 9 - TSS region transcription start site region 71673
Tssr71674 7 29556516 to 29556519 3 - TSS region transcription start site region 71674
4930432E11Rik 7 29556615 to 29576779 20164 + pseudogene RIKEN cDNA 4930432E11 gene
Gm29326 7 29560365 to 29562815 2450 - lincRNA gene predicted gene 29326
A330087D11Rik 7 29568903 to 29573928 5025 - lincRNA gene RIKEN cDNA A330087D11 gene
Gm45978 7 29619477 to 29622580 3103 + protein coding gene predicted gene, 45978
n-R5s153 7 29657161 to 29657276 115 - rRNA gene nuclear encoded rRNA 5S 153
Catsperg2 7 29697219 to 29727032 29813 - protein coding gene cation channel sperm associated auxiliary subunit gamma 2
Tssr71675 7 29726966 to 29726985 19 - TSS region transcription start site region 71675
Tssr71676 7 29726991 to 29727007 16 - TSS region transcription start site region 71676
Gm23103 7 29737318 to 29737424 106 - snRNA gene predicted gene, 23103
Gm38983 7 29763788 to 29768417 4629 - lncRNA gene predicted gene, 38983
Gm44954 7 29764437 to 29764663 226 - pseudogene predicted gene 44954
Cpgi18762 7 29768462 to 29768989 527 CpG island CpG island 18762
Tssr65637 7 29768534 to 29768543 9 + TSS region transcription start site region 65637
Tssr65638 7 29768546 to 29768559 13 + TSS region transcription start site region 65638
Zfp84 7 29768552 to 29779821 11269 + protein coding gene zinc finger protein 84
Tssr65639 7 29768568 to 29768642 74 + TSS region transcription start site region 65639
Tssr65640 7 29768643 to 29768650 7 + TSS region transcription start site region 65640
Mir1964 7 29773294 to 29773376 82 + miRNA gene microRNA 1964
Eosn3 7 29781452 to 29781452 0 QTL eosinophil differential 3
Eosn1 7 29781452 to 29781452 0 QTL eosinophil differential 1
Cpgi18763 7 29783775 to 29784564 789 CpG island CpG island 18763
Tssr65641 7 29783958 to 29784028 70 + TSS region transcription start site region 65641
Zfp30 7 29783998 to 29794702 10704 + protein coding gene zinc finger protein 30
Cpgi18764 7 29792722 to 29793636 914 CpG island CpG island 18764
Gm6579 7 29798712 to 29799796 1084 - pseudogene predicted gene 6579
Tssr71677 7 29799871 to 29799879 8 - TSS region transcription start site region 71677
Cpgi18765 7 29815834 to 29816418 584 CpG island CpG island 18765
Tssr65642 7 29816061 to 29816153 92 + TSS region transcription start site region 65642
Zfp790 7 29816114 to 29831005 14891 + protein coding gene zinc finger protein 790
Zfp940 7 29843936 to 29853753 9817 - protein coding gene zinc finger protein 940
Gm26554 7 29853085 to 29858990 5905 + antisense lncRNA gene predicted gene, 26554
Cpgi18766 7 29853450 to 29853807 357 CpG island CpG island 18766
Tssr71678 7 29853595 to 29853609 14 - TSS region transcription start site region 71678
Tssr71679 7 29853611 to 29853683 72 - TSS region transcription start site region 71679
Gm17199 7 29855640 to 29856055 415 - pseudogene predicted gene 17199
Cpgi18767 7 29859883 to 29860338 455 CpG island CpG island 18767
Tssr65643 7 29859966 to 29860053 87 + TSS region transcription start site region 65643
Zfp420 7 29859979 to 29877292 17313 + protein coding gene zinc finger protein 420
Tssr65644 7 29860099 to 29860121 22 + TSS region transcription start site region 65644
D7Mit210 7 29863922 to 29864009 87 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 210
2900035I09Rik 7 29890155 to 29892587 2432 unclassified non-coding RNA gene RIKEN cDNA 2900035I09 gene
Zfp27 7 29893331 to 29906570 13239 - protein coding gene zinc finger protein 27
Cpgi18768 7 29894220 to 29894775 555 CpG island CpG island 18768
Tssr71680 7 29906087 to 29906137 50 - TSS region transcription start site region 71680
Cpgi18769 7 29906185 to 29906449 264 CpG island CpG island 18769
Mir7668 7 29906509 to 29906567 58 + miRNA gene microRNA 7668
Tssr71681 7 29906524 to 29906567 43 - TSS region transcription start site region 71681
Zfp383 7 29908281 to 29916813 8532 + protein coding gene zinc finger protein 383
Cpgi18770 7 29908335 to 29908784 449 CpG island CpG island 18770
Tssr65645 7 29908492 to 29908573 81 + TSS region transcription start site region 65645
D7Mit117 7 29926306 to 29926453 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 117
D7Dcr3 7 29926316 to 29926414 98 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 3
Gm44873 7 29926978 to 29930405 3427 + unclassified gene predicted gene 44873
Zfp74 7 29932661 to 29954441 21780 - protein coding gene zinc finger protein 74
Tssr65646 7 29941449 to 29941454 5 + TSS region transcription start site region 65646
Tssr65647 7 29941545 to 29941575 30 + TSS region transcription start site region 65647
Tssr71682 7 29943747 to 29943757 10 - TSS region transcription start site region 71682
Tssr65648 7 29943989 to 29944001 12 + TSS region transcription start site region 65648
Tssr65649 7 29944557 to 29944596 39 + TSS region transcription start site region 65649
Cpgi18771 7 29953465 to 29954132 667 CpG island CpG island 18771
Tssr71683 7 29953870 to 29953900 30 - TSS region transcription start site region 71683