Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28878636-29288694

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capn12 7 28881450 to 28893585 12135 + protein coding gene calpain 12
Tssr65577 7 28881710 to 28881718 8 + TSS region transcription start site region 65577
Gm44700 7 28887127 to 28888483 1356 - antisense lncRNA gene predicted gene 44700
Cpgi18726 7 28888193 to 28889145 952 CpG island CpG island 18726
Actn4 7 28893248 to 28962340 69092 - protein coding gene actinin alpha 4
Tssr2175 7 28893701 to 28893708 7 - TSS region transcription start site region 2175
Tssr71582 7 28893738 to 28893763 25 - TSS region transcription start site region 71582
Tssr71583 7 28893839 to 28893850 11 - TSS region transcription start site region 71583
Tssr71584 7 28893980 to 28893992 12 - TSS region transcription start site region 71584
Tssr71585 7 28894145 to 28894183 38 - TSS region transcription start site region 71585
Tssr71586 7 28894345 to 28894361 16 - TSS region transcription start site region 71586
Tssr71587 7 28895012 to 28895034 22 - TSS region transcription start site region 71587
Tssr65578 7 28895114 to 28895119 5 + TSS region transcription start site region 65578
Tssr65579 7 28895177 to 28895190 13 + TSS region transcription start site region 65579
Tssr65580 7 28895219 to 28895228 9 + TSS region transcription start site region 65580
Tssr65581 7 28895237 to 28895257 20 + TSS region transcription start site region 65581
Tssr71588 7 28898098 to 28898132 34 - TSS region transcription start site region 71588
Tssr71589 7 28907294 to 28907299 5 - TSS region transcription start site region 71589
Tssr71590 7 28907349 to 28907367 18 - TSS region transcription start site region 71590
Tssr71591 7 28907375 to 28907392 17 - TSS region transcription start site region 71591
Gm44699 7 28920951 to 28943528 22577 - sense intronic lncRNA gene predicted gene 44699
Tssr71592 7 28925414 to 28925418 4 - TSS region transcription start site region 71592
Gm38978 7 28927421 to 28932124 4703 + lncRNA gene predicted gene, 38978
Tssr65582 7 28931715 to 28931717 2 + TSS region transcription start site region 65582
Tssr71593 7 28948806 to 28948818 12 - TSS region transcription start site region 71593
Tssr71594 7 28949653 to 28949660 7 - TSS region transcription start site region 71594
Tssr71595 7 28949670 to 28949679 9 - TSS region transcription start site region 71595
Tssr71596 7 28958178 to 28958182 4 - TSS region transcription start site region 71596
Cpgi18727 7 28961667 to 28963048 1381 CpG island CpG island 18727
Tssr71597 7 28962236 to 28962247 11 - TSS region transcription start site region 71597
Tssr71598 7 28962265 to 28962310 45 - TSS region transcription start site region 71598
Tssr71599 7 28962326 to 28962337 11 - TSS region transcription start site region 71599
Tssr2176 7 28962512 to 28962533 21 + TSS region transcription start site region 2176
Eif3k 7 28971372 to 28981864 10492 - protein coding gene eukaryotic translation initiation factor 3, subunit K
Tssr65583 7 28972605 to 28972633 28 + TSS region transcription start site region 65583
Tssr71600 7 28977909 to 28977950 41 - TSS region transcription start site region 71600
Cpgi18728 7 28981482 to 28982421 939 CpG island CpG island 18728
Tssr71601 7 28981787 to 28981821 34 - TSS region transcription start site region 71601
Map4k1 7 28982050 to 29003279 21229 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 1
Tssr65584 7 28982832 to 28982892 60 + TSS region transcription start site region 65584
Tssr65585 7 28982910 to 28982921 11 + TSS region transcription start site region 65585
Tssr65586 7 28984729 to 28984730 1 + TSS region transcription start site region 65586
Tssr65587 7 29000784 to 29000822 38 + TSS region transcription start site region 65587
Tssr65588 7 29000823 to 29000837 14 + TSS region transcription start site region 65588
Cpgi18729 7 29000848 to 29001542 694 CpG island CpG island 18729
Tssr65589 7 29001515 to 29001532 17 + TSS region transcription start site region 65589
Tssr65590 7 29001534 to 29001552 18 + TSS region transcription start site region 65590
Tssr65591 7 29001566 to 29001591 25 + TSS region transcription start site region 65591
Tssr65592 7 29001598 to 29001625 27 + TSS region transcription start site region 65592
Ryr1 7 29003344 to 29125179 121835 - protein coding gene ryanodine receptor 1, skeletal muscle
Tssr71602 7 29006144 to 29006193 49 - TSS region transcription start site region 71602
Tssr71603 7 29007881 to 29007923 42 - TSS region transcription start site region 71603
Tssr71604 7 29008770 to 29008817 47 - TSS region transcription start site region 71604
Cpgi18730 7 29019369 to 29020594 1225 CpG island CpG island 18730
Tssr71605 7 29019975 to 29020036 61 - TSS region transcription start site region 71605
Cpgi18731 7 29023981 to 29024294 313 CpG island CpG island 18731
Gm38979 7 29029575 to 29030065 490 + antisense lncRNA gene predicted gene, 38979
Cpgi18732 7 29040295 to 29040701 406 CpG island CpG island 18732
Tssr71606 7 29042258 to 29042269 11 - TSS region transcription start site region 71606
Tssr71607 7 29042308 to 29042320 12 - TSS region transcription start site region 71607
Tssr65593 7 29043593 to 29043680 87 + TSS region transcription start site region 65593
Gm44408 7 29045628 to 29045693 65 + miRNA gene predicted gene, 44408
Cpgi18733 7 29052609 to 29053261 652 CpG island CpG island 18733
Cpgi18734 7 29061624 to 29061861 237 CpG island CpG island 18734
Cpgi18735 7 29064315 to 29064741 426 CpG island CpG island 18735
Cpgi18736 7 29071307 to 29072058 751 CpG island CpG island 18736
Tssr65594 7 29071597 to 29071613 16 + TSS region transcription start site region 65594
Gm26604 7 29071658 to 29079911 8253 + antisense lncRNA gene predicted gene, 26604
Mir1963 7 29083636 to 29083694 58 - miRNA gene microRNA 1963
Cpgi18737 7 29085694 to 29086378 684 CpG island CpG island 18737
Cpgi18738 7 29087135 to 29087441 306 CpG island CpG island 18738
Cpgi18739 7 29109171 to 29109791 620 CpG island CpG island 18739
Tssr71608 7 29113888 to 29113920 32 - TSS region transcription start site region 71608
Tssr71609 7 29125142 to 29125160 18 - TSS region transcription start site region 71609
Tssr65595 7 29134887 to 29134898 11 + TSS region transcription start site region 65595
Rasgrp4 7 29134913 to 29153961 19048 + protein coding gene RAS guanyl releasing protein 4
Tssr65596 7 29134925 to 29134957 32 + TSS region transcription start site region 65596
Tssr65597 7 29134971 to 29134992 21 + TSS region transcription start site region 65597
Tssr65598 7 29137629 to 29137642 13 + TSS region transcription start site region 65598
Gm16282 7 29138440 to 29140312 1872 - antisense lncRNA gene predicted gene 16282
Fam98c 7 29152510 to 29156234 3724 - protein coding gene family with sequence similarity 98, member C
Cpgi18740 7 29155299 to 29156615 1316 CpG island CpG island 18740
Tssr71610 7 29155597 to 29155616 19 - TSS region transcription start site region 71610
Tssr71611 7 29155622 to 29155631 9 - TSS region transcription start site region 71611
Tssr65599 7 29155643 to 29155668 25 + TSS region transcription start site region 65599
Tssr65600 7 29155671 to 29155691 20 + TSS region transcription start site region 65600
1110035H17Rik 7 29155680 to 29156920 1240 + antisense lncRNA gene RIKEN cDNA 1110035H17 gene
Tssr71612 7 29155717 to 29155730 13 - TSS region transcription start site region 71612
Tssr65601 7 29155744 to 29155754 10 + TSS region transcription start site region 65601
Tssr71613 7 29155936 to 29155956 20 - TSS region transcription start site region 71613
Tssr71614 7 29155963 to 29155995 32 - TSS region transcription start site region 71614
Tssr71615 7 29156172 to 29156210 38 - TSS region transcription start site region 71615
Spred3 7 29158829 to 29170411 11582 - protein coding gene sprouty-related EVH1 domain containing 3
Cpgi18741 7 29161531 to 29162068 537 CpG island CpG island 18741
Tssr71616 7 29166901 to 29166905 4 - TSS region transcription start site region 71616
Cpgi18742 7 29167696 to 29167958 262 CpG island CpG island 18742
Tssr65602 7 29168393 to 29168402 9 + TSS region transcription start site region 65602
Cpgi18743 7 29169327 to 29169577 250 CpG island CpG island 18743
Tssr65603 7 29170204 to 29170224 20 + TSS region transcription start site region 65603
Ggn 7 29170210 to 29173938 3728 + protein coding gene gametogenetin
Cpgi18744 7 29170223 to 29170623 400 CpG island CpG island 18744
Tssr65604 7 29170240 to 29170249 9 + TSS region transcription start site region 65604
Tssr65605 7 29170320 to 29170327 7 + TSS region transcription start site region 65605
Tssr65606 7 29170345 to 29170414 69 + TSS region transcription start site region 65606
Tssr65607 7 29170851 to 29170860 9 + TSS region transcription start site region 65607
Cpgi18745 7 29171001 to 29173092 2091 CpG island CpG island 18745
Tssr65608 7 29171404 to 29171427 23 + TSS region transcription start site region 65608
Tssr65609 7 29172339 to 29172346 7 + TSS region transcription start site region 65609
Psmd8 7 29174187 to 29180673 6486 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
Tssr71617 7 29176120 to 29176135 15 - TSS region transcription start site region 71617
Tssr71618 7 29177180 to 29177201 21 - TSS region transcription start site region 71618
Tssr71619 7 29178968 to 29179002 34 - TSS region transcription start site region 71619
Tssr71620 7 29179162 to 29179181 19 - TSS region transcription start site region 71620
Tssr71621 7 29179187 to 29179224 37 - TSS region transcription start site region 71621
Tssr71622 7 29179319 to 29179343 24 - TSS region transcription start site region 71622
Tssr71623 7 29179346 to 29179364 18 - TSS region transcription start site region 71623
Tssr71624 7 29179377 to 29179401 24 - TSS region transcription start site region 71624
Tssr71625 7 29179407 to 29179437 30 - TSS region transcription start site region 71625
Tssr65610 7 29179540 to 29179547 7 + TSS region transcription start site region 65610
Tssr65611 7 29179572 to 29179579 7 + TSS region transcription start site region 65611
Cpgi18746 7 29179893 to 29180869 976 CpG island CpG island 18746
Tssr71626 7 29180454 to 29180532 78 - TSS region transcription start site region 71626
Tssr71627 7 29180631 to 29180650 19 - TSS region transcription start site region 71627
Tssr71628 7 29180651 to 29180689 38 - TSS region transcription start site region 71628
Tssr71629 7 29180699 to 29180710 11 - TSS region transcription start site region 71629
Catsperg1 7 29181321 to 29214035 32714 - protein coding gene cation channel sperm associated auxiliary subunit gamma 1
Gm17113 7 29183036 to 29183383 347 + pseudogene predicted gene 17113
Cpgi18747 7 29211508 to 29212126 618 CpG island CpG island 18747
Cpgi18748 7 29212496 to 29213182 686 CpG island CpG island 18748
Cpgi18749 7 29213752 to 29213958 206 CpG island CpG island 18749
Tssr71630 7 29213957 to 29213983 26 - TSS region transcription start site region 71630
Kcnk6 7 29221926 to 29232515 10589 - protein coding gene potassium inwardly-rectifying channel, subfamily K, member 6
Cpgi18750 7 29225045 to 29225341 296 CpG island CpG island 18750
Cpgi18751 7 29231958 to 29232839 881 CpG island CpG island 18751
Tssr71631 7 29232451 to 29232471 20 - TSS region transcription start site region 71631
Tssr71632 7 29232478 to 29232527 49 - TSS region transcription start site region 71632
Tssr71633 7 29232537 to 29232610 73 - TSS region transcription start site region 71633
Cpgi18752 7 29237953 to 29238862 909 CpG island CpG island 18752
Tssr71634 7 29238099 to 29238106 7 - TSS region transcription start site region 71634
Tssr65612 7 29238304 to 29238315 11 + TSS region transcription start site region 65612
Tssr65613 7 29238323 to 29238394 71 + TSS region transcription start site region 65613
Yif1b 7 29238329 to 29247597 9268 + protein coding gene Yip1 interacting factor homolog B (S. cerevisiae)
Tssr65614 7 29238434 to 29238456 22 + TSS region transcription start site region 65614
Tssr65615 7 29238478 to 29238507 29 + TSS region transcription start site region 65615
Tssr65616 7 29238510 to 29238557 47 + TSS region transcription start site region 65616
Tssr65617 7 29245739 to 29245750 11 + TSS region transcription start site region 65617
Tssr71635 7 29247122 to 29247138 16 - TSS region transcription start site region 71635
Cpgi18753 7 29247235 to 29248186 951 CpG island CpG island 18753
2200002D01Rik 7 29247521 to 29248467 946 - protein coding gene RIKEN cDNA 2200002D01 gene
Tssr65618 7 29247635 to 29247670 35 + TSS region transcription start site region 65618
Tssr71636 7 29247726 to 29247745 19 - TSS region transcription start site region 71636
Tssr71637 7 29247926 to 29247939 13 - TSS region transcription start site region 71637
Tssr71638 7 29247944 to 29247972 28 - TSS region transcription start site region 71638
Tssr71639 7 29248375 to 29248424 49 - TSS region transcription start site region 71639
Tssr71640 7 29248457 to 29248468 11 - TSS region transcription start site region 71640
Tssr71641 7 29248511 to 29248533 22 - TSS region transcription start site region 71641
Spint2 7 29256323 to 29281912 25589 - protein coding gene serine protease inhibitor, Kunitz type 2
Tssr71642 7 29256412 to 29256416 4 - TSS region transcription start site region 71642
Tssr71643 7 29256491 to 29256594 103 - TSS region transcription start site region 71643
Tssr71644 7 29258540 to 29258575 35 - TSS region transcription start site region 71644
Cpgi18754 7 29281206 to 29282372 1166 CpG island CpG island 18754
Tssr2177 7 29281580 to 29281595 15 - TSS region transcription start site region 2177
Tssr71645 7 29281616 to 29281688 72 - TSS region transcription start site region 71645
Tssr2178 7 29281769 to 29281784 15 - TSS region transcription start site region 2178
Tssr2179 7 29281821 to 29281892 71 - TSS region transcription start site region 2179
Tssr2180 7 29281900 to 29281904 4 - TSS region transcription start site region 2180
Tssr71646 7 29281914 to 29281935 21 - TSS region transcription start site region 71646
Tssr71647 7 29281938 to 29281973 35 - TSS region transcription start site region 71647
Tssr71648 7 29281979 to 29281990 11 - TSS region transcription start site region 71648
Tssr71649 7 29282033 to 29282040 7 - TSS region transcription start site region 71649
Gm45977 7 29283576 to 29288356 4780 - lncRNA gene predicted gene, 45977
Tssr71650 7 29288259 to 29288305 46 - TSS region transcription start site region 71650