Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28516586-28746594

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ifnl3 7 28522836 to 28524322 1486 + protein coding gene interferon lambda 3
Tssr71536 7 28528078 to 28528087 9 - TSS region transcription start site region 71536
Gm19880 7 28534772 to 28535089 317 + pseudogene predicted gene, 19880
Tssr65487 7 28540718 to 28540728 10 + TSS region transcription start site region 65487
Tssr2170 7 28540819 to 28540833 14 + TSS region transcription start site region 2170
Tssr65488 7 28540863 to 28540886 23 + TSS region transcription start site region 65488
Sycn 7 28540885 to 28542209 1324 + protein coding gene syncollin
Tssr65489 7 28540894 to 28540906 12 + TSS region transcription start site region 65489
Tssr2171 7 28541003 to 28541021 18 + TSS region transcription start site region 2171
Nccrp1 7 28543596 to 28547254 3658 - protein coding gene non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
Tssr65490 7 28543927 to 28543944 17 + TSS region transcription start site region 65490
Tssr65491 7 28543982 to 28544013 31 + TSS region transcription start site region 65491
Tssr71537 7 28543982 to 28544001 19 - TSS region transcription start site region 71537
Tssr71538 7 28544038 to 28544062 24 - TSS region transcription start site region 71538
Cpgi18709 7 28544101 to 28544685 584 CpG island CpG island 18709
Tssr71539 7 28544129 to 28544141 12 - TSS region transcription start site region 71539
Tssr71540 7 28544228 to 28544240 12 - TSS region transcription start site region 71540
Tssr71541 7 28544441 to 28544452 11 - TSS region transcription start site region 71541
Cpgi18710 7 28546706 to 28547105 399 CpG island CpG island 18710
Tssr71542 7 28547043 to 28547087 44 - TSS region transcription start site region 71542
Tssr71543 7 28547109 to 28547120 11 - TSS region transcription start site region 71543
Gm38977 7 28547766 to 28550229 2463 + lncRNA gene predicted gene, 38977
Pak4 7 28558819 to 28598184 39365 - protein coding gene p21 (RAC1) activated kinase 4
Mir7049 7 28560925 to 28560984 59 - miRNA gene microRNA 7049
Tssr71544 7 28561044 to 28561054 10 - TSS region transcription start site region 71544
Tssr71545 7 28561101 to 28561112 11 - TSS region transcription start site region 71545
Tssr71546 7 28561683 to 28561694 11 - TSS region transcription start site region 71546
Cpgi18711 7 28562511 to 28562727 216 CpG island CpG island 18711
Tssr71547 7 28576656 to 28576689 33 - TSS region transcription start site region 71547
Tssr65492 7 28597189 to 28597196 7 + TSS region transcription start site region 65492
Cpgi18712 7 28597756 to 28598434 678 CpG island CpG island 18712
Tssr71548 7 28598140 to 28598176 36 - TSS region transcription start site region 71548
Acp7 7 28607634 to 28631332 23698 - protein coding gene acid phosphatase 7, tartrate resistant
Cpgi18713 7 28616998 to 28617268 270 CpG island CpG island 18713
Gm44618 7 28629248 to 28681936 52688 + lincRNA gene predicted gene 44618
Tssr71549 7 28629694 to 28629713 19 - TSS region transcription start site region 71549
Tssr71550 7 28629722 to 28629741 19 - TSS region transcription start site region 71550
Tssr71551 7 28629752 to 28629763 11 - TSS region transcription start site region 71551
Tssr71552 7 28629792 to 28629802 10 - TSS region transcription start site region 71552
Tssr65493 7 28629921 to 28629929 8 + TSS region transcription start site region 65493
Cpgi18714 7 28630257 to 28630913 656 CpG island CpG island 18714
Tssr71553 7 28630501 to 28630512 11 - TSS region transcription start site region 71553
Tssr71554 7 28630897 to 28630920 23 - TSS region transcription start site region 71554
Tssr71555 7 28631586 to 28631594 8 - TSS region transcription start site region 71555
Gm44617 7 28640443 to 28645671 5228 + unclassified non-coding RNA gene predicted gene 44617
Tssr71556 7 28646771 to 28646780 9 - TSS region transcription start site region 71556
Tssr65494 7 28692816 to 28692834 18 + TSS region transcription start site region 65494
Fbxo27 7 28692849 to 28699338 6489 + protein coding gene F-box protein 27
Tssr65495 7 28692855 to 28692870 15 + TSS region transcription start site region 65495
Tssr65496 7 28693003 to 28693010 7 + TSS region transcription start site region 65496
Tssr65497 7 28693012 to 28693021 9 + TSS region transcription start site region 65497
Tssr65498 7 28693032 to 28693043 11 + TSS region transcription start site region 65498
Cpgi18715 7 28693059 to 28693751 692 CpG island CpG island 18715
Tssr65499 7 28693997 to 28694012 15 + TSS region transcription start site region 65499
Tssr71557 7 28695255 to 28695272 17 - TSS region transcription start site region 71557
Tssr65500 7 28709701 to 28709730 29 + TSS region transcription start site region 65500
Cpgi18716 7 28716517 to 28717066 549 CpG island CpG island 18716
Tssr65501 7 28716777 to 28716840 63 + TSS region transcription start site region 65501
Fbxo17 7 28716804 to 28738144 21340 + protein coding gene F-box protein 17
Tssr65502 7 28716846 to 28716861 15 + TSS region transcription start site region 65502
Cpgi18717 7 28732355 to 28733255 900 CpG island CpG island 18717
Tssr65503 7 28735049 to 28735063 14 + TSS region transcription start site region 65503
Tssr65504 7 28735958 to 28735969 11 + TSS region transcription start site region 65504
Mrps12 7 28739641 to 28741820 2179 - protein coding gene mitochondrial ribosomal protein S12
Tssr71558 7 28741716 to 28741731 15 - TSS region transcription start site region 71558
Tssr71559 7 28741736 to 28741745 9 - TSS region transcription start site region 71559
Tssr71560 7 28741749 to 28741777 28 - TSS region transcription start site region 71560
Cpgi18718 7 28741758 to 28742354 596 CpG island CpG island 18718
Tssr71561 7 28741780 to 28741843 63 - TSS region transcription start site region 71561
Tssr65505 7 28741975 to 28742013 38 + TSS region transcription start site region 65505
Sars2 7 28741992 to 28753871 11879 + protein coding gene seryl-aminoacyl-tRNA synthetase 2