Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28450012-29340034

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391 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18704 7 28451421 to 28452835 1414 CpG island CpG island 18704
Tssr65485 7 28451943 to 28451989 46 + TSS region transcription start site region 65485
Lrfn1 7 28451985 to 28468242 16257 + protein coding gene leucine rich repeat and fibronectin type III domain containing 1
Cpgi18705 7 28458665 to 28459997 1332 CpG island CpG island 18705
Cpgi18706 7 28466563 to 28467957 1394 CpG island CpG island 18706
Tssr65486 7 28467899 to 28467902 3 + TSS region transcription start site region 65486
Gm6518 7 28477327 to 28477852 525 - pseudogene predicted gene 6518
Cpgi18707 7 28490783 to 28491123 340 CpG island CpG island 18707
1700028B04Rik 7 28496941 to 28497492 551 + pseudogene RIKEN cDNA 1700028B04 gene
Cpgi18708 7 28497090 to 28497359 269 CpG island CpG island 18708
Ifnl2 7 28508836 to 28510455 1619 - protein coding gene interferon lambda 2
Ifnl3 7 28522836 to 28524322 1486 + protein coding gene interferon lambda 3
Tssr71536 7 28528078 to 28528087 9 - TSS region transcription start site region 71536
Gm19880 7 28534772 to 28535089 317 + pseudogene predicted gene, 19880
Tssr65487 7 28540718 to 28540728 10 + TSS region transcription start site region 65487
Tssr2170 7 28540819 to 28540833 14 + TSS region transcription start site region 2170
Tssr65488 7 28540863 to 28540886 23 + TSS region transcription start site region 65488
Sycn 7 28540885 to 28542209 1324 + protein coding gene syncollin
Tssr65489 7 28540894 to 28540906 12 + TSS region transcription start site region 65489
Tssr2171 7 28541003 to 28541021 18 + TSS region transcription start site region 2171
Nccrp1 7 28543596 to 28547254 3658 - protein coding gene non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
Tssr65490 7 28543927 to 28543944 17 + TSS region transcription start site region 65490
Tssr71537 7 28543982 to 28544001 19 - TSS region transcription start site region 71537
Tssr65491 7 28543982 to 28544013 31 + TSS region transcription start site region 65491
Tssr71538 7 28544038 to 28544062 24 - TSS region transcription start site region 71538
Cpgi18709 7 28544101 to 28544685 584 CpG island CpG island 18709
Tssr71539 7 28544129 to 28544141 12 - TSS region transcription start site region 71539
Tssr71540 7 28544228 to 28544240 12 - TSS region transcription start site region 71540
Tssr71541 7 28544441 to 28544452 11 - TSS region transcription start site region 71541
Cpgi18710 7 28546706 to 28547105 399 CpG island CpG island 18710
Tssr71542 7 28547043 to 28547087 44 - TSS region transcription start site region 71542
Tssr71543 7 28547109 to 28547120 11 - TSS region transcription start site region 71543
Gm38977 7 28547766 to 28550229 2463 + lncRNA gene predicted gene, 38977
Pak4 7 28558819 to 28598184 39365 - protein coding gene p21 (RAC1) activated kinase 4
Mir7049 7 28560925 to 28560984 59 - miRNA gene microRNA 7049
Tssr71544 7 28561044 to 28561054 10 - TSS region transcription start site region 71544
Tssr71545 7 28561101 to 28561112 11 - TSS region transcription start site region 71545
Tssr71546 7 28561683 to 28561694 11 - TSS region transcription start site region 71546
Cpgi18711 7 28562511 to 28562727 216 CpG island CpG island 18711
Tssr71547 7 28576656 to 28576689 33 - TSS region transcription start site region 71547
Tssr65492 7 28597189 to 28597196 7 + TSS region transcription start site region 65492
Cpgi18712 7 28597756 to 28598434 678 CpG island CpG island 18712
Tssr71548 7 28598140 to 28598176 36 - TSS region transcription start site region 71548
Acp7 7 28607634 to 28631332 23698 - protein coding gene acid phosphatase 7, tartrate resistant
Cpgi18713 7 28616998 to 28617268 270 CpG island CpG island 18713
Gm44618 7 28629248 to 28681936 52688 + lincRNA gene predicted gene 44618
Tssr71549 7 28629694 to 28629713 19 - TSS region transcription start site region 71549
Tssr71550 7 28629722 to 28629741 19 - TSS region transcription start site region 71550
Tssr71551 7 28629752 to 28629763 11 - TSS region transcription start site region 71551
Tssr71552 7 28629792 to 28629802 10 - TSS region transcription start site region 71552
Tssr65493 7 28629921 to 28629929 8 + TSS region transcription start site region 65493
Cpgi18714 7 28630257 to 28630913 656 CpG island CpG island 18714
Tssr71553 7 28630501 to 28630512 11 - TSS region transcription start site region 71553
Tssr71554 7 28630897 to 28630920 23 - TSS region transcription start site region 71554
Tssr71555 7 28631586 to 28631594 8 - TSS region transcription start site region 71555
Gm44617 7 28640443 to 28645671 5228 + unclassified non-coding RNA gene predicted gene 44617
Tssr71556 7 28646771 to 28646780 9 - TSS region transcription start site region 71556
Tssr65494 7 28692816 to 28692834 18 + TSS region transcription start site region 65494
Fbxo27 7 28692849 to 28699338 6489 + protein coding gene F-box protein 27
Tssr65495 7 28692855 to 28692870 15 + TSS region transcription start site region 65495
Tssr65496 7 28693003 to 28693010 7 + TSS region transcription start site region 65496
Tssr65497 7 28693012 to 28693021 9 + TSS region transcription start site region 65497
Tssr65498 7 28693032 to 28693043 11 + TSS region transcription start site region 65498
Cpgi18715 7 28693059 to 28693751 692 CpG island CpG island 18715
Tssr65499 7 28693997 to 28694012 15 + TSS region transcription start site region 65499
Tssr71557 7 28695255 to 28695272 17 - TSS region transcription start site region 71557
Tssr65500 7 28709701 to 28709730 29 + TSS region transcription start site region 65500
Cpgi18716 7 28716517 to 28717066 549 CpG island CpG island 18716
Tssr65501 7 28716777 to 28716840 63 + TSS region transcription start site region 65501
Fbxo17 7 28716804 to 28738144 21340 + protein coding gene F-box protein 17
Tssr65502 7 28716846 to 28716861 15 + TSS region transcription start site region 65502
Cpgi18717 7 28732355 to 28733255 900 CpG island CpG island 18717
Tssr65503 7 28735049 to 28735063 14 + TSS region transcription start site region 65503
Tssr65504 7 28735958 to 28735969 11 + TSS region transcription start site region 65504
Mrps12 7 28739641 to 28741820 2179 - protein coding gene mitochondrial ribosomal protein S12
Tssr71558 7 28741716 to 28741731 15 - TSS region transcription start site region 71558
Tssr71559 7 28741736 to 28741745 9 - TSS region transcription start site region 71559
Tssr71560 7 28741749 to 28741777 28 - TSS region transcription start site region 71560
Cpgi18718 7 28741758 to 28742354 596 CpG island CpG island 18718
Tssr71561 7 28741780 to 28741843 63 - TSS region transcription start site region 71561
Tssr65505 7 28741975 to 28742013 38 + TSS region transcription start site region 65505
Sars2 7 28741992 to 28753871 11879 + protein coding gene seryl-aminoacyl-tRNA synthetase 2
Tssr65506 7 28756138 to 28756157 19 + TSS region transcription start site region 65506
Ccer2 7 28756174 to 28758968 2794 + protein coding gene coiled-coil glutamate-rich protein 2
Nfkbib 7 28758251 to 28766644 8393 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta
Tssr71562 7 28759944 to 28759956 12 - TSS region transcription start site region 71562
Tssr71563 7 28759957 to 28759988 31 - TSS region transcription start site region 71563
Tssr71564 7 28761705 to 28761728 23 - TSS region transcription start site region 71564
Tssr71565 7 28761770 to 28761818 48 - TSS region transcription start site region 71565
Tssr71566 7 28761834 to 28761846 12 - TSS region transcription start site region 71566
Tssr71567 7 28762128 to 28762137 9 - TSS region transcription start site region 71567
Tssr71568 7 28764611 to 28764617 6 - TSS region transcription start site region 71568
Cpgi18719 7 28766156 to 28766956 800 CpG island CpG island 18719
Tssr71569 7 28766191 to 28766225 34 - TSS region transcription start site region 71569
Tssr71570 7 28766275 to 28766323 48 - TSS region transcription start site region 71570
Tssr65507 7 28766276 to 28766323 47 + TSS region transcription start site region 65507
Tssr71571 7 28766431 to 28766442 11 - TSS region transcription start site region 71571
Tssr71572 7 28766445 to 28766468 23 - TSS region transcription start site region 71572
Tssr71573 7 28766469 to 28766510 41 - TSS region transcription start site region 71573
Sirt2 7 28766735 to 28788661 21926 + protein coding gene sirtuin 2
Tssr65508 7 28766747 to 28766822 75 + TSS region transcription start site region 65508
Tssr65509 7 28766837 to 28766849 12 + TSS region transcription start site region 65509
Tssr71574 7 28766976 to 28766986 10 - TSS region transcription start site region 71574
Tssr71575 7 28767112 to 28767117 5 - TSS region transcription start site region 71575
Tssr71576 7 28767124 to 28767154 30 - TSS region transcription start site region 71576
Tssr65510 7 28767221 to 28767226 5 + TSS region transcription start site region 65510
Tssr65511 7 28767233 to 28767244 11 + TSS region transcription start site region 65511
Tssr65512 7 28767626 to 28767642 16 + TSS region transcription start site region 65512
Tssr65513 7 28769774 to 28769782 8 + TSS region transcription start site region 65513
Gm19897 7 28774899 to 28781514 6615 - lncRNA gene predicted gene, 19897
Tssr71577 7 28781334 to 28781380 46 - TSS region transcription start site region 71577
Tssr65514 7 28781564 to 28781577 13 + TSS region transcription start site region 65514
Tssr65515 7 28784353 to 28784365 12 + TSS region transcription start site region 65515
Tssr65516 7 28785365 to 28785384 19 + TSS region transcription start site region 65516
Tssr65517 7 28787773 to 28787786 13 + TSS region transcription start site region 65517
Tssr65518 7 28787968 to 28788017 49 + TSS region transcription start site region 65518
Tssr65519 7 28788223 to 28788239 16 + TSS region transcription start site region 65519
Tssr65520 7 28788252 to 28788266 14 + TSS region transcription start site region 65520
Tssr65521 7 28788939 to 28788942 3 + TSS region transcription start site region 65521
Tssr65522 7 28788955 to 28788986 31 + TSS region transcription start site region 65522
Rinl 7 28788969 to 28798963 9994 + protein coding gene Ras and Rab interactor-like
n-TKctt24 7 28793988 to 28794060 72 - tRNA gene nuclear encoded tRNA lysine 24 (anticodon TTT)
Tssr65523 7 28795972 to 28796001 29 + TSS region transcription start site region 65523
Tssr65524 7 28796009 to 28796070 61 + TSS region transcription start site region 65524
Cpgi18720 7 28796537 to 28797344 807 CpG island CpG island 18720
Tssr71578 7 28803859 to 28803863 4 - TSS region transcription start site region 71578
Hnrnpl 7 28808546 to 28822268 13722 + protein coding gene heterogeneous nuclear ribonucleoprotein L
Cpgi18721 7 28808566 to 28809935 1369 CpG island CpG island 18721
Tssr65525 7 28808795 to 28808832 37 + TSS region transcription start site region 65525
Tssr71579 7 28809059 to 28809081 22 - TSS region transcription start site region 71579
Tssr65526 7 28809230 to 28809251 21 + TSS region transcription start site region 65526
Gm44702 7 28809304 to 28810497 1193 - antisense lncRNA gene predicted gene 44702
Tssr71580 7 28810201 to 28810238 37 - TSS region transcription start site region 71580
Cpgi18722 7 28810372 to 28811624 1252 CpG island CpG island 18722
Tssr71581 7 28810494 to 28810522 28 - TSS region transcription start site region 71581
Tssr65527 7 28810886 to 28810918 32 + TSS region transcription start site region 65527
Tssr65528 7 28810928 to 28810951 23 + TSS region transcription start site region 65528
Tssr2172 7 28810964 to 28810972 8 + TSS region transcription start site region 2172
Tssr2173 7 28811072 to 28811077 5 + TSS region transcription start site region 2173
Tssr65529 7 28813275 to 28813294 19 + TSS region transcription start site region 65529
Tssr65530 7 28813908 to 28813935 27 + TSS region transcription start site region 65530
Tssr65531 7 28813991 to 28814002 11 + TSS region transcription start site region 65531
Tssr65532 7 28814009 to 28814023 14 + TSS region transcription start site region 65532
Tssr65533 7 28814025 to 28814043 18 + TSS region transcription start site region 65533
Tssr65534 7 28814843 to 28814847 4 + TSS region transcription start site region 65534
Tssr65535 7 28815142 to 28815157 15 + TSS region transcription start site region 65535
Tssr65536 7 28818457 to 28818478 21 + TSS region transcription start site region 65536
Tssr65537 7 28818540 to 28818551 11 + TSS region transcription start site region 65537
Tssr65538 7 28818592 to 28818603 11 + TSS region transcription start site region 65538
Tssr65539 7 28818680 to 28818705 25 + TSS region transcription start site region 65539
Tssr65540 7 28818750 to 28818763 13 + TSS region transcription start site region 65540
Tssr65541 7 28818779 to 28818807 28 + TSS region transcription start site region 65541
Tssr65542 7 28820629 to 28820646 17 + TSS region transcription start site region 65542
Tssr65543 7 28820652 to 28820713 61 + TSS region transcription start site region 65543
Tssr65544 7 28822007 to 28822030 23 + TSS region transcription start site region 65544
Tssr65545 7 28822033 to 28822044 11 + TSS region transcription start site region 65545
Tssr65546 7 28822051 to 28822053 2 + TSS region transcription start site region 65546
Cpgi18723 7 28825131 to 28825493 362 CpG island CpG island 18723
Tssr65547 7 28825202 to 28825215 13 + TSS region transcription start site region 65547
Tssr65548 7 28825273 to 28825285 12 + TSS region transcription start site region 65548
Tssr65549 7 28825301 to 28825314 13 + TSS region transcription start site region 65549
Tssr65550 7 28825318 to 28825363 45 + TSS region transcription start site region 65550
Ech1 7 28825338 to 28832239 6901 + protein coding gene enoyl coenzyme A hydratase 1, peroxisomal
Tssr65551 7 28827522 to 28827524 2 + TSS region transcription start site region 65551
Tssr65552 7 28827631 to 28827632 1 + TSS region transcription start site region 65552
Tssr65553 7 28830007 to 28830028 21 + TSS region transcription start site region 65553
Tssr65554 7 28830087 to 28830092 5 + TSS region transcription start site region 65554
Tssr65555 7 28830107 to 28830137 30 + TSS region transcription start site region 65555
Tssr65556 7 28830142 to 28830156 14 + TSS region transcription start site region 65556
Tssr65557 7 28831375 to 28831389 14 + TSS region transcription start site region 65557
Tssr65558 7 28832378 to 28832392 14 + TSS region transcription start site region 65558
Lgals4 7 28833854 to 28841708 7854 + protein coding gene lectin, galactose binding, soluble 4
Tssr65559 7 28833967 to 28833984 17 + TSS region transcription start site region 65559
Tssr65560 7 28834004 to 28834014 10 + TSS region transcription start site region 65560
Tssr65561 7 28834024 to 28834030 6 + TSS region transcription start site region 65561
Tssr65562 7 28834038 to 28834049 11 + TSS region transcription start site region 65562
Tssr65563 7 28834054 to 28834060 6 + TSS region transcription start site region 65563
Tssr65564 7 28834068 to 28834074 6 + TSS region transcription start site region 65564
Tssr65565 7 28834087 to 28834115 28 + TSS region transcription start site region 65565
Tssr65566 7 28834125 to 28834146 21 + TSS region transcription start site region 65566
Tssr65567 7 28834168 to 28834171 3 + TSS region transcription start site region 65567
Tssr65568 7 28834477 to 28834505 28 + TSS region transcription start site region 65568
Tssr65569 7 28835859 to 28835875 16 + TSS region transcription start site region 65569
Tssr65570 7 28835896 to 28835922 26 + TSS region transcription start site region 65570
Tssr65571 7 28836642 to 28836646 4 + TSS region transcription start site region 65571
Tssr65572 7 28837556 to 28837562 6 + TSS region transcription start site region 65572
Tssr2174 7 28838697 to 28838736 39 + TSS region transcription start site region 2174
Tssr65573 7 28841606 to 28841625 19 + TSS region transcription start site region 65573
Tssr65574 7 28863831 to 28863835 4 + TSS region transcription start site region 65574
Lgals7 7 28863853 to 28866284 2431 + protein coding gene lectin, galactose binding, soluble 7
Tssr65575 7 28864445 to 28864460 15 + TSS region transcription start site region 65575
Cpgi18724 7 28865993 to 28866298 305 CpG island CpG island 18724
Tssr65576 7 28866224 to 28866255 31 + TSS region transcription start site region 65576
Cpgi18725 7 28867234 to 28867543 309 CpG island CpG island 18725
Gm10648 7 28870545 to 28876334 5789 - antisense lncRNA gene predicted gene 10648
Capn12 7 28881450 to 28893585 12135 + protein coding gene calpain 12
Tssr65577 7 28881710 to 28881718 8 + TSS region transcription start site region 65577
Gm44700 7 28887127 to 28888483 1356 - antisense lncRNA gene predicted gene 44700
Cpgi18726 7 28888193 to 28889145 952 CpG island CpG island 18726
Actn4 7 28893248 to 28962340 69092 - protein coding gene actinin alpha 4