Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28381563-28552957

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm44710 7 28378980 to 28392514 13534 + antisense lncRNA gene predicted gene 44710
Tssr71524 7 28381878 to 28381899 21 - TSS region transcription start site region 71524
Tssr71525 7 28381924 to 28381929 5 - TSS region transcription start site region 71525
Tssr71526 7 28381932 to 28381943 11 - TSS region transcription start site region 71526
Cpgi18701 7 28381986 to 28382607 621 CpG island CpG island 18701
Tssr71527 7 28382112 to 28382145 33 - TSS region transcription start site region 71527
Tssr2166 7 28382895 to 28382906 11 - TSS region transcription start site region 2166
Tssr71528 7 28382976 to 28382991 15 - TSS region transcription start site region 71528
Tssr65469 7 28383100 to 28383129 29 + TSS region transcription start site region 65469
Tssr71529 7 28383124 to 28383150 26 - TSS region transcription start site region 71529
Tssr65470 7 28383419 to 28383437 18 + TSS region transcription start site region 65470
Tssr71530 7 28385759 to 28385764 5 - TSS region transcription start site region 71530
Tssr71531 7 28386116 to 28386138 22 - TSS region transcription start site region 71531
Med29 7 28386146 to 28392708 6562 - protein coding gene mediator complex subunit 29
Cpgi18702 7 28392201 to 28393759 1558 CpG island CpG island 18702
Tssr71532 7 28392688 to 28392708 20 - TSS region transcription start site region 71532
Tssr65471 7 28392916 to 28393013 97 + TSS region transcription start site region 65471
Paf1 7 28392996 to 28399383 6387 + protein coding gene Paf1, RNA polymerase II complex component
Tssr65472 7 28393037 to 28393042 5 + TSS region transcription start site region 65472
Samd4b 7 28399522 to 28436191 36669 - protein coding gene sterile alpha motif domain containing 4B
Tssr71533 7 28401101 to 28401146 45 - TSS region transcription start site region 71533
Cpgi18703 7 28435620 to 28437206 1586 CpG island CpG island 18703
Tssr65473 7 28436089 to 28436098 9 + TSS region transcription start site region 65473
Tssr65474 7 28436124 to 28436133 9 + TSS region transcription start site region 65474
Tssr71534 7 28436234 to 28436245 11 - TSS region transcription start site region 71534
Tssr71535 7 28436274 to 28436340 66 - TSS region transcription start site region 71535
Tssr65475 7 28436363 to 28436370 7 + TSS region transcription start site region 65475
1700085B13Rik 7 28436391 to 28436953 562 unclassified gene RIKEN cDNA 1700085B13 gene
Tssr65476 7 28436394 to 28436401 7 + TSS region transcription start site region 65476
Tssr65477 7 28437447 to 28437486 39 + TSS region transcription start site region 65477
Gmfg 7 28437447 to 28448211 10764 + protein coding gene glia maturation factor, gamma
Tssr65478 7 28440931 to 28440945 14 + TSS region transcription start site region 65478
Tssr65479 7 28440946 to 28441018 72 + TSS region transcription start site region 65479
Tssr65480 7 28441026 to 28441035 9 + TSS region transcription start site region 65480
Tssr2167 7 28441141 to 28441156 15 + TSS region transcription start site region 2167
Tssr2168 7 28442739 to 28442745 6 - TSS region transcription start site region 2168
Tssr2169 7 28442870 to 28442908 38 - TSS region transcription start site region 2169
Tssr65481 7 28443077 to 28443124 47 + TSS region transcription start site region 65481
Tssr65482 7 28443953 to 28443962 9 + TSS region transcription start site region 65482
Tssr65483 7 28444780 to 28444850 70 + TSS region transcription start site region 65483
Tssr65484 7 28444939 to 28444969 30 + TSS region transcription start site region 65484
Cpgi18704 7 28451421 to 28452835 1414 CpG island CpG island 18704
Tssr65485 7 28451943 to 28451989 46 + TSS region transcription start site region 65485
Lrfn1 7 28451985 to 28468242 16257 + protein coding gene leucine rich repeat and fibronectin type III domain containing 1
Cpgi18705 7 28458665 to 28459997 1332 CpG island CpG island 18705
Cpgi18706 7 28466563 to 28467957 1394 CpG island CpG island 18706
Tssr65486 7 28467899 to 28467902 3 + TSS region transcription start site region 65486
Gm6518 7 28477327 to 28477852 525 - pseudogene predicted gene 6518
Cpgi18707 7 28490783 to 28491123 340 CpG island CpG island 18707
1700028B04Rik 7 28496941 to 28497492 551 + pseudogene RIKEN cDNA 1700028B04 gene
Cpgi18708 7 28497090 to 28497359 269 CpG island CpG island 18708
Ifnl2 7 28508836 to 28510455 1619 - protein coding gene interferon lambda 2
Ifnl3 7 28522836 to 28524322 1486 + protein coding gene interferon lambda 3
Tssr71536 7 28528078 to 28528087 9 - TSS region transcription start site region 71536
Gm19880 7 28534772 to 28535089 317 + pseudogene predicted gene, 19880
Tssr65487 7 28540718 to 28540728 10 + TSS region transcription start site region 65487
Tssr2170 7 28540819 to 28540833 14 + TSS region transcription start site region 2170
Tssr65488 7 28540863 to 28540886 23 + TSS region transcription start site region 65488
Sycn 7 28540885 to 28542209 1324 + protein coding gene syncollin
Tssr65489 7 28540894 to 28540906 12 + TSS region transcription start site region 65489
Tssr2171 7 28541003 to 28541021 18 + TSS region transcription start site region 2171
Nccrp1 7 28543596 to 28547254 3658 - protein coding gene non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
Tssr65490 7 28543927 to 28543944 17 + TSS region transcription start site region 65490
Tssr65491 7 28543982 to 28544013 31 + TSS region transcription start site region 65491
Tssr71537 7 28543982 to 28544001 19 - TSS region transcription start site region 71537
Tssr71538 7 28544038 to 28544062 24 - TSS region transcription start site region 71538
Cpgi18709 7 28544101 to 28544685 584 CpG island CpG island 18709
Tssr71539 7 28544129 to 28544141 12 - TSS region transcription start site region 71539
Tssr71540 7 28544228 to 28544240 12 - TSS region transcription start site region 71540
Tssr71541 7 28544441 to 28544452 11 - TSS region transcription start site region 71541
Cpgi18710 7 28546706 to 28547105 399 CpG island CpG island 18710
Tssr71542 7 28547043 to 28547087 44 - TSS region transcription start site region 71542
Tssr71543 7 28547109 to 28547120 11 - TSS region transcription start site region 71543
Gm38977 7 28547766 to 28550229 2463 + lncRNA gene predicted gene, 38977