Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28340620-28532206

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18695 7 28350258 to 28351342 1084 CpG island CpG island 18695
Tssr71477 7 28350465 to 28350476 11 - TSS region transcription start site region 71477
Tssr71478 7 28350526 to 28350563 37 - TSS region transcription start site region 71478
Rps16 7 28350689 to 28352698 2009 + protein coding gene ribosomal protein S16
Tssr65458 7 28350740 to 28350762 22 + TSS region transcription start site region 65458
AF357399 7 28351540 to 28351633 93 + snoRNA gene snoRNA AF357399
Plekhg2 7 28359604 to 28372599 12995 - protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 2
Tssr71479 7 28367660 to 28367665 5 - TSS region transcription start site region 71479
Tssr71480 7 28367712 to 28367722 10 - TSS region transcription start site region 71480
Cpgi18696 7 28371417 to 28373126 1709 CpG island CpG island 18696
Tssr71481 7 28372340 to 28372371 31 - TSS region transcription start site region 71481
Tssr71482 7 28372510 to 28372519 9 - TSS region transcription start site region 71482
Tssr71483 7 28372534 to 28372547 13 - TSS region transcription start site region 71483
Tssr71484 7 28372548 to 28372557 9 - TSS region transcription start site region 71484
Tssr71485 7 28372563 to 28372583 20 - TSS region transcription start site region 71485
Tssr71486 7 28372597 to 28372610 13 - TSS region transcription start site region 71486
Tssr71487 7 28372630 to 28372637 7 - TSS region transcription start site region 71487
Tssr71488 7 28372657 to 28372666 9 - TSS region transcription start site region 71488
Tssr65459 7 28372930 to 28372971 41 + TSS region transcription start site region 65459
n-TIaat16 7 28372999 to 28373093 94 + tRNA gene nuclear encoded tRNA isoleucine 16 (anticodon TAT)
Tssr71489 7 28375522 to 28375584 62 - TSS region transcription start site region 71489
Cpgi18697 7 28375602 to 28375917 315 CpG island CpG island 18697
Tssr65460 7 28375770 to 28375792 22 + TSS region transcription start site region 65460
Tssr65461 7 28376525 to 28376563 38 + TSS region transcription start site region 65461
Tssr65462 7 28376726 to 28376738 12 + TSS region transcription start site region 65462
Zfp36 7 28376784 to 28379228 2444 - protein coding gene zinc finger protein 36
Tssr71490 7 28376970 to 28376994 24 - TSS region transcription start site region 71490
Tssr71491 7 28377074 to 28377091 17 - TSS region transcription start site region 71491
Tssr71492 7 28377130 to 28377169 39 - TSS region transcription start site region 71492
Tssr71493 7 28377174 to 28377219 45 - TSS region transcription start site region 71493
Tssr71494 7 28377221 to 28377254 33 - TSS region transcription start site region 71494
Tssr71495 7 28377266 to 28377284 18 - TSS region transcription start site region 71495
Tssr65463 7 28377486 to 28377495 9 + TSS region transcription start site region 65463
Tssr71496 7 28377617 to 28377631 14 - TSS region transcription start site region 71496
Tssr71497 7 28377865 to 28377879 14 - TSS region transcription start site region 71497
Cpgi18698 7 28377899 to 28378599 700 CpG island CpG island 18698
Tssr71498 7 28377923 to 28377940 17 - TSS region transcription start site region 71498
Tssr65464 7 28377996 to 28378053 57 + TSS region transcription start site region 65464
Tssr71499 7 28378016 to 28378034 18 - TSS region transcription start site region 71499
Tssr71500 7 28378049 to 28378058 9 - TSS region transcription start site region 71500
Tssr71501 7 28378067 to 28378085 18 - TSS region transcription start site region 71501
Tssr71502 7 28378107 to 28378110 3 - TSS region transcription start site region 71502
Tssr71503 7 28378143 to 28378151 8 - TSS region transcription start site region 71503
Tssr71504 7 28378171 to 28378182 11 - TSS region transcription start site region 71504
Tssr71505 7 28378187 to 28378199 12 - TSS region transcription start site region 71505
Tssr71506 7 28378206 to 28378213 7 - TSS region transcription start site region 71506
Tssr71507 7 28378247 to 28378260 13 - TSS region transcription start site region 71507
Tssr71508 7 28378269 to 28378294 25 - TSS region transcription start site region 71508
Tssr71509 7 28378307 to 28378354 47 - TSS region transcription start site region 71509
Tssr71510 7 28378386 to 28378398 12 - TSS region transcription start site region 71510
Tssr71511 7 28378425 to 28378434 9 - TSS region transcription start site region 71511
Tssr71512 7 28378480 to 28378514 34 - TSS region transcription start site region 71512
Cpgi18699 7 28378747 to 28379497 750 CpG island CpG island 18699
Gm44710 7 28378980 to 28392514 13534 + antisense lncRNA gene predicted gene 44710
Tssr71513 7 28379096 to 28379101 5 - TSS region transcription start site region 71513
Tssr71514 7 28379225 to 28379235 10 - TSS region transcription start site region 71514
Tssr71515 7 28379247 to 28379263 16 - TSS region transcription start site region 71515
Tssr65465 7 28379352 to 28379390 38 + TSS region transcription start site region 65465
Tssr2163 7 28379356 to 28379400 44 - TSS region transcription start site region 2163
Tssr2164 7 28379489 to 28379502 13 - TSS region transcription start site region 2164
Tssr2165 7 28379532 to 28379545 13 - TSS region transcription start site region 2165
Tssr71516 7 28380281 to 28380285 4 - TSS region transcription start site region 71516
Tssr71517 7 28380927 to 28380936 9 - TSS region transcription start site region 71517
Tssr71518 7 28380949 to 28380954 5 - TSS region transcription start site region 71518
Tssr71519 7 28380970 to 28380981 11 - TSS region transcription start site region 71519
Cpgi18700 7 28380997 to 28381290 293 CpG island CpG island 18700
Tssr71520 7 28381014 to 28381021 7 - TSS region transcription start site region 71520
Tssr71521 7 28381026 to 28381042 16 - TSS region transcription start site region 71521
Tssr71522 7 28381068 to 28381087 19 - TSS region transcription start site region 71522
Tssr65466 7 28381259 to 28381281 22 + TSS region transcription start site region 65466
Tssr65467 7 28381283 to 28381295 12 + TSS region transcription start site region 65467
Tssr71523 7 28381292 to 28381297 5 - TSS region transcription start site region 71523
Tssr65468 7 28381392 to 28381403 11 + TSS region transcription start site region 65468
Tssr71524 7 28381878 to 28381899 21 - TSS region transcription start site region 71524
Tssr71525 7 28381924 to 28381929 5 - TSS region transcription start site region 71525
Tssr71526 7 28381932 to 28381943 11 - TSS region transcription start site region 71526
Cpgi18701 7 28381986 to 28382607 621 CpG island CpG island 18701
Tssr71527 7 28382112 to 28382145 33 - TSS region transcription start site region 71527
Tssr2166 7 28382895 to 28382906 11 - TSS region transcription start site region 2166
Tssr71528 7 28382976 to 28382991 15 - TSS region transcription start site region 71528
Tssr65469 7 28383100 to 28383129 29 + TSS region transcription start site region 65469
Tssr71529 7 28383124 to 28383150 26 - TSS region transcription start site region 71529
Tssr65470 7 28383419 to 28383437 18 + TSS region transcription start site region 65470
Tssr71530 7 28385759 to 28385764 5 - TSS region transcription start site region 71530
Tssr71531 7 28386116 to 28386138 22 - TSS region transcription start site region 71531
Med29 7 28386146 to 28392708 6562 - protein coding gene mediator complex subunit 29
Cpgi18702 7 28392201 to 28393759 1558 CpG island CpG island 18702
Tssr71532 7 28392688 to 28392708 20 - TSS region transcription start site region 71532
Tssr65471 7 28392916 to 28393013 97 + TSS region transcription start site region 65471
Paf1 7 28392996 to 28399383 6387 + protein coding gene Paf1, RNA polymerase II complex component
Tssr65472 7 28393037 to 28393042 5 + TSS region transcription start site region 65472
Samd4b 7 28399522 to 28436191 36669 - protein coding gene sterile alpha motif domain containing 4B
Tssr71533 7 28401101 to 28401146 45 - TSS region transcription start site region 71533
Cpgi18703 7 28435620 to 28437206 1586 CpG island CpG island 18703
Tssr65473 7 28436089 to 28436098 9 + TSS region transcription start site region 65473
Tssr65474 7 28436124 to 28436133 9 + TSS region transcription start site region 65474
Tssr71534 7 28436234 to 28436245 11 - TSS region transcription start site region 71534
Tssr71535 7 28436274 to 28436340 66 - TSS region transcription start site region 71535
Tssr65475 7 28436363 to 28436370 7 + TSS region transcription start site region 65475
1700085B13Rik 7 28436391 to 28436953 562 unclassified gene RIKEN cDNA 1700085B13 gene
Tssr65476 7 28436394 to 28436401 7 + TSS region transcription start site region 65476
Tssr65477 7 28437447 to 28437486 39 + TSS region transcription start site region 65477
Gmfg 7 28437447 to 28448211 10764 + protein coding gene glia maturation factor, gamma
Tssr65478 7 28440931 to 28440945 14 + TSS region transcription start site region 65478
Tssr65479 7 28440946 to 28441018 72 + TSS region transcription start site region 65479
Tssr65480 7 28441026 to 28441035 9 + TSS region transcription start site region 65480
Tssr2167 7 28441141 to 28441156 15 + TSS region transcription start site region 2167
Tssr2168 7 28442739 to 28442745 6 - TSS region transcription start site region 2168
Tssr2169 7 28442870 to 28442908 38 - TSS region transcription start site region 2169
Tssr65481 7 28443077 to 28443124 47 + TSS region transcription start site region 65481
Tssr65482 7 28443953 to 28443962 9 + TSS region transcription start site region 65482
Tssr65483 7 28444780 to 28444850 70 + TSS region transcription start site region 65483
Tssr65484 7 28444939 to 28444969 30 + TSS region transcription start site region 65484
Cpgi18704 7 28451421 to 28452835 1414 CpG island CpG island 18704
Tssr65485 7 28451943 to 28451989 46 + TSS region transcription start site region 65485
Lrfn1 7 28451985 to 28468242 16257 + protein coding gene leucine rich repeat and fibronectin type III domain containing 1
Cpgi18705 7 28458665 to 28459997 1332 CpG island CpG island 18705
Cpgi18706 7 28466563 to 28467957 1394 CpG island CpG island 18706
Tssr65486 7 28467899 to 28467902 3 + TSS region transcription start site region 65486
Gm6518 7 28477327 to 28477852 525 - pseudogene predicted gene 6518
Cpgi18707 7 28490783 to 28491123 340 CpG island CpG island 18707
1700028B04Rik 7 28496941 to 28497492 551 + pseudogene RIKEN cDNA 1700028B04 gene
Cpgi18708 7 28497090 to 28497359 269 CpG island CpG island 18708
Ifnl2 7 28508836 to 28510455 1619 - protein coding gene interferon lambda 2
Ifnl3 7 28522836 to 28524322 1486 + protein coding gene interferon lambda 3
Tssr71536 7 28528078 to 28528087 9 - TSS region transcription start site region 71536