Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:27528607-28166438

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272 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hipk4 7 27523267 to 27531175 7908 + protein coding gene homeodomain interacting protein kinase 4
Tssr71407 7 27531712 to 27531737 25 - TSS region transcription start site region 71407
Pld3 7 27532000 to 27553218 21218 - protein coding gene phospholipase D family, member 3
Tssr71408 7 27532463 to 27532479 16 - TSS region transcription start site region 71408
Tssr71409 7 27532624 to 27532654 30 - TSS region transcription start site region 71409
Tssr65289 7 27533645 to 27533672 27 + TSS region transcription start site region 65289
Tssr71410 7 27533697 to 27533709 12 - TSS region transcription start site region 71410
Tssr71411 7 27533721 to 27533734 13 - TSS region transcription start site region 71411
Tssr71412 7 27535309 to 27535336 27 - TSS region transcription start site region 71412
Tssr65290 7 27535804 to 27535825 21 + TSS region transcription start site region 65290
Tssr71413 7 27535878 to 27535909 31 - TSS region transcription start site region 71413
Tssr71414 7 27535913 to 27535934 21 - TSS region transcription start site region 71414
Tssr65291 7 27537573 to 27537596 23 + TSS region transcription start site region 65291
Tssr65292 7 27537602 to 27537645 43 + TSS region transcription start site region 65292
Tssr71415 7 27537750 to 27537779 29 - TSS region transcription start site region 71415
Tssr65293 7 27541084 to 27541112 28 + TSS region transcription start site region 65293
Tssr71416 7 27541200 to 27541243 43 - TSS region transcription start site region 71416
Tssr65294 7 27541654 to 27541704 50 + TSS region transcription start site region 65294
Tssr71417 7 27541705 to 27541728 23 - TSS region transcription start site region 71417
Tssr71418 7 27541733 to 27541751 18 - TSS region transcription start site region 71418
Tssr71419 7 27541778 to 27541798 20 - TSS region transcription start site region 71419
Tssr71420 7 27541800 to 27541835 35 - TSS region transcription start site region 71420
Tssr71421 7 27541953 to 27541993 40 - TSS region transcription start site region 71421
Tssr71422 7 27542329 to 27542352 23 - TSS region transcription start site region 71422
Cpgi18667 7 27542614 to 27542955 341 CpG island CpG island 18667
Tssr71423 7 27542774 to 27542809 35 - TSS region transcription start site region 71423
Tssr71424 7 27545124 to 27545160 36 - TSS region transcription start site region 71424
Tssr65295 7 27545305 to 27545329 24 + TSS region transcription start site region 65295
Cpgi18668 7 27552802 to 27553652 850 CpG island CpG island 18668
Tssr71425 7 27553014 to 27553070 56 - TSS region transcription start site region 71425
Tssr71426 7 27553104 to 27553115 11 - TSS region transcription start site region 71426
Tssr71427 7 27553138 to 27553249 111 - TSS region transcription start site region 71427
Tssr65296 7 27553244 to 27553302 58 + TSS region transcription start site region 65296
2310022A10Rik 7 27553260 to 27582099 28839 + protein coding gene RIKEN cDNA 2310022A10 gene
Gm45975 7 27556544 to 27559504 2960 + protein coding gene predicted gene, 45975
Tssr65297 7 27556681 to 27556684 3 + TSS region transcription start site region 65297
Tssr65298 7 27560451 to 27560468 17 + TSS region transcription start site region 65298
Tssr65299 7 27560470 to 27560496 26 + TSS region transcription start site region 65299
Tssr65300 7 27560498 to 27560516 18 + TSS region transcription start site region 65300
Tssr65301 7 27560527 to 27560555 28 + TSS region transcription start site region 65301
Tssr65302 7 27566390 to 27566414 24 + TSS region transcription start site region 65302
Tssr71428 7 27572167 to 27572181 14 - TSS region transcription start site region 71428
Tssr65303 7 27574390 to 27574480 90 + TSS region transcription start site region 65303
Tssr65304 7 27575729 to 27575748 19 + TSS region transcription start site region 65304
Tssr65305 7 27580905 to 27580918 13 + TSS region transcription start site region 65305
Tssr65306 7 27581225 to 27581258 33 + TSS region transcription start site region 65306
Tssr65307 7 27581261 to 27581277 16 + TSS region transcription start site region 65307
Gm18046 7 27588410 to 27588946 536 - pseudogene predicted gene, 18046
Cpgi18669 7 27591507 to 27592407 900 CpG island CpG island 18669
Tssr65308 7 27591513 to 27591562 49 + TSS region transcription start site region 65308
Akt2 7 27591557 to 27639453 47896 + protein coding gene thymoma viral proto-oncogene 2
Tssr65309 7 27591607 to 27591651 44 + TSS region transcription start site region 65309
Tssr65310 7 27591705 to 27591778 73 + TSS region transcription start site region 65310
Tssr65311 7 27592727 to 27592745 18 + TSS region transcription start site region 65311
Tssr65312 7 27592776 to 27592790 14 + TSS region transcription start site region 65312
Tssr65313 7 27597052 to 27597109 57 + TSS region transcription start site region 65313
Tssr65314 7 27605801 to 27605841 40 + TSS region transcription start site region 65314
Tssr65315 7 27605847 to 27605860 13 + TSS region transcription start site region 65315
Spir1 7 27606373 to 27606511 138 QTL Streptococcus pneumoniae infection resistance 1
Asp3 7 27606373 to 37142942 9536569 QTL audiogenic seizure prone 3
D7Mit77 7 27606373 to 27606511 138 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 77
Tssr65316 7 27607758 to 27607804 46 + TSS region transcription start site region 65316
Tssr65317 7 27607997 to 27608009 12 + TSS region transcription start site region 65317
Tssr65318 7 27608075 to 27608096 21 + TSS region transcription start site region 65318
Tssr65319 7 27618081 to 27618100 19 + TSS region transcription start site region 65319
Tssr65320 7 27619351 to 27619354 3 + TSS region transcription start site region 65320
Gm38973 7 27649426 to 27651059 1633 - lncRNA gene predicted gene, 38973
Tssr65321 7 27649897 to 27649902 5 + TSS region transcription start site region 65321
Cpgi18670 7 27653582 to 27654425 843 CpG island CpG island 18670
Tssr65322 7 27653881 to 27653900 19 + TSS region transcription start site region 65322
Tssr65323 7 27653906 to 27653960 54 + TSS region transcription start site region 65323
Ttc9b 7 27653924 to 27656207 2283 + protein coding gene tetratricopeptide repeat domain 9B
Tssr65324 7 27653994 to 27654007 13 + TSS region transcription start site region 65324
Map3k10 7 27656375 to 27674598 18223 - protein coding gene mitogen-activated protein kinase kinase kinase 10
Cpgi18671 7 27657766 to 27658741 975 CpG island CpG island 18671
1500037F05Rik 7 27670932 to 27671782 850 unclassified gene RIKEN cDNA 1500037F05 gene
Cpgi18672 7 27673359 to 27675113 1754 CpG island CpG island 18672
Tssr71429 7 27674516 to 27674630 114 - TSS region transcription start site region 71429
Gm44684 7 27674659 to 27677844 3185 - unclassified non-coding RNA gene predicted gene 44684
Gm45976 7 27678831 to 27690211 11380 - lncRNA gene predicted gene, 45976
Zfp607b 7 27689340 to 27706484 17144 + protein coding gene zinc finger protein 607B
Tssr65325 7 27689529 to 27689572 43 + TSS region transcription start site region 65325
Phf5b-ps 7 27709721 to 27710513 792 + pseudogene PHD finger protein 5B, pseudogene
Cpgi18673 7 27731174 to 27731963 789 CpG island CpG island 18673
Tssr65326 7 27731373 to 27731397 24 + TSS region transcription start site region 65326
Tssr65327 7 27731398 to 27731441 43 + TSS region transcription start site region 65327
Zfp60 7 27731409 to 27751689 20280 + protein coding gene zinc finger protein 60
Tssr65328 7 27731445 to 27731456 11 + TSS region transcription start site region 65328
Tssr65329 7 27731612 to 27731621 9 + TSS region transcription start site region 65329
Tssr65330 7 27749545 to 27749550 5 + TSS region transcription start site region 65330
Tssr71430 7 27761332 to 27761353 21 - TSS region transcription start site region 71430
Tssr65331 7 27765659 to 27765732 73 + TSS region transcription start site region 65331
Gm10046 7 27765673 to 27770972 5299 + pseudogene predicted gene 10046
Cpgi18674 7 27766277 to 27766471 194 CpG island CpG island 18674
Gm29810 7 27784377 to 27795483 11106 + pseudogene predicted gene, 29810
Cpgi18675 7 27804727 to 27805055 328 CpG island CpG island 18675
Tssr65332 7 27804819 to 27804872 53 + TSS region transcription start site region 65332
Tssr65333 7 27804882 to 27804894 12 + TSS region transcription start site region 65333
Zfp626 7 27807196 to 27822916 15720 + protein coding gene zinc finger protein 626
Cpgi18676 7 27838467 to 27838622 155 CpG island CpG island 18676
Tssr65334 7 27838542 to 27838556 14 + TSS region transcription start site region 65334
Tssr65335 7 27838560 to 27838612 52 + TSS region transcription start site region 65335
Zfp59 7 27838607 to 27856438 17831 + protein coding gene zinc finger protein 59
Zfp607a 7 27857527 to 27880825 23298 + protein coding gene zinc finger protein 607A
Tssr65336 7 27860552 to 27860564 12 + TSS region transcription start site region 65336
Tssr65337 7 27860566 to 27860640 74 + TSS region transcription start site region 65337
Cpgi18677 7 27860567 to 27860898 331 CpG island CpG island 18677
Tssr71431 7 27861028 to 27861039 11 - TSS region transcription start site region 71431
Prkcz2 7 27882755 to 27884510 1755 - pseudogene protein kinase C, zeta 2
Cpgi18678 7 27883952 to 27884684 732 CpG island CpG island 18678
Tssr65338 7 27887332 to 27887350 18 + TSS region transcription start site region 65338
Tssr65339 7 27899026 to 27899033 7 + TSS region transcription start site region 65339
Zfp974 7 27907392 to 27929430 22038 - protein coding gene zinc finger protein 974
Tssr71432 7 27912626 to 27912628 2 - TSS region transcription start site region 71432
Gm38720 7 27925378 to 27927382 2004 + lncRNA gene predicted gene, 38720
Gm26891 7 27927549 to 27928474 925 + antisense lncRNA gene predicted gene, 26891
Tssr65340 7 27927592 to 27927597 5 + TSS region transcription start site region 65340
Cpgi18679 7 27929087 to 27929488 401 CpG island CpG island 18679
Tssr71433 7 27929443 to 27929465 22 - TSS region transcription start site region 71433
Tssr71434 7 27929468 to 27929487 19 - TSS region transcription start site region 71434
Gm10651 7 27949155 to 27949763 608 - pseudogene predicted pseudogene 10651
Zfp780b 7 27959800 to 27979157 19357 - protein coding gene zinc finger protein 780B
Tssr71435 7 27970776 to 27970780 4 - TSS region transcription start site region 71435
Cpgi18680 7 27978962 to 27979294 332 CpG island CpG island 18680
Tssr71436 7 27979134 to 27979154 20 - TSS region transcription start site region 71436
Tssr71437 7 27979155 to 27979181 26 - TSS region transcription start site region 71437
Vmn1r-ps87 7 27982861 to 27983813 952 + pseudogene vomeronasal 1 receptor, pseudogene 87
Zfp850 7 27984854 to 28014115 29261 - protein coding gene zinc finger protein 850
Cpgi18681 7 28013689 to 28014355 666 CpG island CpG island 18681
Tssr71438 7 28014123 to 28014183 60 - TSS region transcription start site region 71438
Gm46025 7 28022462 to 28026145 3683 - pseudogene predicted gene, 46025
Psmc4 7 28041702 to 28050092 8390 - protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase, 4
Cpgi18682 7 28049794 to 28050396 602 CpG island CpG island 18682
Tssr71439 7 28050028 to 28050080 52 - TSS region transcription start site region 71439
Gm44744 7 28054732 to 28055837 1105 + lincRNA gene predicted gene 44744
Tssr71440 7 28055163 to 28055168 5 - TSS region transcription start site region 71440
Tssr71441 7 28055200 to 28055209 9 - TSS region transcription start site region 71441
Tssr65341 7 28070945 to 28070949 4 + TSS region transcription start site region 65341
Tssr65342 7 28070998 to 28071029 31 + TSS region transcription start site region 65342
Tssr65343 7 28071198 to 28071213 15 + TSS region transcription start site region 65343
Tssr65344 7 28071215 to 28071228 13 + TSS region transcription start site region 65344
Tssr65345 7 28071230 to 28071242 12 + TSS region transcription start site region 65345
Fcgbp 7 28071236 to 28120862 49626 + protein coding gene Fc fragment of IgG binding protein
Tssr65346 7 28075177 to 28075188 11 + TSS region transcription start site region 65346
Tssr65347 7 28075204 to 28075215 11 + TSS region transcription start site region 65347
Tssr65348 7 28075224 to 28075242 18 + TSS region transcription start site region 65348
Tssr65349 7 28075295 to 28075302 7 + TSS region transcription start site region 65349
Tssr65350 7 28075311 to 28075328 17 + TSS region transcription start site region 65350
Tssr65351 7 28075333 to 28075350 17 + TSS region transcription start site region 65351
Tssr65352 7 28084917 to 28084950 33 + TSS region transcription start site region 65352
Tssr65353 7 28085191 to 28085212 21 + TSS region transcription start site region 65353
Tssr2154 7 28085345 to 28085358 13 - TSS region transcription start site region 2154
Tssr2155 7 28085354 to 28085365 11 + TSS region transcription start site region 2155
Tssr65354 7 28085413 to 28085424 11 + TSS region transcription start site region 65354
Tssr65355 7 28086333 to 28086342 9 + TSS region transcription start site region 65355
Tssr65356 7 28086346 to 28086361 15 + TSS region transcription start site region 65356
Tssr65357 7 28086470 to 28086480 10 + TSS region transcription start site region 65357
Tssr65358 7 28086525 to 28086543 18 + TSS region transcription start site region 65358
Tssr65359 7 28089812 to 28089827 15 + TSS region transcription start site region 65359
Tssr65360 7 28091796 to 28091817 21 + TSS region transcription start site region 65360
Gm21925 7 28093312 to 28147515 54203 + pseudogene predicted gene, 21925
Tssr65361 7 28093580 to 28093606 26 + TSS region transcription start site region 65361
Tssr65362 7 28101254 to 28101263 9 + TSS region transcription start site region 65362
Tssr65363 7 28101295 to 28101307 12 + TSS region transcription start site region 65363
Tssr65364 7 28103935 to 28103946 11 + TSS region transcription start site region 65364
Cpgi18683 7 28104607 to 28105126 519 CpG island CpG island 18683
Tssr65365 7 28104773 to 28104780 7 + TSS region transcription start site region 65365
Tssr2156 7 28107319 to 28107328 9 + TSS region transcription start site region 2156
Tssr71442 7 28115281 to 28115293 12 - TSS region transcription start site region 71442
Tssr71443 7 28115330 to 28115345 15 - TSS region transcription start site region 71443
Tssr71444 7 28115348 to 28115362 14 - TSS region transcription start site region 71444
Tssr65366 7 28115582 to 28115589 7 + TSS region transcription start site region 65366
Tssr65367 7 28115597 to 28115606 9 + TSS region transcription start site region 65367
Tssr65368 7 28115622 to 28115627 5 + TSS region transcription start site region 65368
Tssr65369 7 28117383 to 28117392 9 + TSS region transcription start site region 65369
Tssr65370 7 28117432 to 28117439 7 + TSS region transcription start site region 65370
Tssr65371 7 28120507 to 28120549 42 + TSS region transcription start site region 65371
Gm24356 7 28123254 to 28123359 105 + snRNA gene predicted gene, 24356
Tssr65372 7 28129102 to 28129106 4 + TSS region transcription start site region 65372
Tssr65373 7 28129142 to 28129182 40 + TSS region transcription start site region 65373
Tssr71445 7 28129320 to 28129328 8 - TSS region transcription start site region 71445
Tssr65374 7 28129378 to 28129388 10 + TSS region transcription start site region 65374
Tssr65375 7 28129431 to 28129458 27 + TSS region transcription start site region 65375
Tssr65376 7 28129459 to 28129479 20 + TSS region transcription start site region 65376
9530053A07Rik 7 28129466 to 28164811 35345 + protein coding gene RIKEN cDNA 9530053A07 gene
Tssr65377 7 28129480 to 28129490 10 + TSS region transcription start site region 65377
Tssr65378 7 28129512 to 28129513 1 + TSS region transcription start site region 65378
Tssr65379 7 28129636 to 28129638 2 + TSS region transcription start site region 65379
Tssr65380 7 28129804 to 28129810 6 + TSS region transcription start site region 65380
Tssr65381 7 28131488 to 28131503 15 + TSS region transcription start site region 65381
Tssr65382 7 28131541 to 28131556 15 + TSS region transcription start site region 65382
Tssr2157 7 28131592 to 28131599 7 - TSS region transcription start site region 2157
Tssr65383 7 28131655 to 28131662 7 + TSS region transcription start site region 65383
Tssr71446 7 28131664 to 28131669 5 - TSS region transcription start site region 71446
Tssr2158 7 28131693 to 28131700 7 - TSS region transcription start site region 2158
Tssr65384 7 28131696 to 28131707 11 + TSS region transcription start site region 65384
Tssr71447 7 28131751 to 28131768 17 - TSS region transcription start site region 71447
Tssr65385 7 28135055 to 28135058 3 + TSS region transcription start site region 65385
Tssr71448 7 28137098 to 28137107 9 - TSS region transcription start site region 71448
Tssr65386 7 28137104 to 28137111 7 + TSS region transcription start site region 65386