Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:27340801-27870841

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shkbp1 7 27342133 to 27356019 13886 - protein coding gene Sh3kbp1 binding protein 1
Gm20479 7 27352649 to 27357419 4770 - protein coding gene predicted gene 20479
Tssr71392 7 27355699 to 27355729 30 - TSS region transcription start site region 71392
Cpgi18648 7 27355812 to 27356478 666 CpG island CpG island 18648
Tssr71393 7 27355944 to 27355977 33 - TSS region transcription start site region 71393
Tssr71394 7 27355980 to 27356014 34 - TSS region transcription start site region 71394
Sptbn4 7 27356383 to 27447686 91303 - protein coding gene spectrin beta, non-erythrocytic 4
Cpgi18649 7 27357145 to 27357540 395 CpG island CpG island 18649
Tssr71395 7 27360112 to 27360136 24 - TSS region transcription start site region 71395
Tssr71396 7 27361328 to 27361340 12 - TSS region transcription start site region 71396
Tssr71397 7 27361343 to 27361360 17 - TSS region transcription start site region 71397
Cpgi18650 7 27361371 to 27362017 646 CpG island CpG island 18650
Cpgi18651 7 27363755 to 27364749 994 CpG island CpG island 18651
Tssr71398 7 27366534 to 27366564 30 - TSS region transcription start site region 71398
Cpgi18652 7 27367475 to 27368023 548 CpG island CpG island 18652
Cpgi18653 7 27371879 to 27372530 651 CpG island CpG island 18653
Cpgi18654 7 27375237 to 27375687 450 CpG island CpG island 18654
Cpgi18655 7 27396090 to 27397089 999 CpG island CpG island 18655
Tssr71399 7 27396542 to 27396566 24 - TSS region transcription start site region 71399
Tssr71400 7 27396570 to 27396615 45 - TSS region transcription start site region 71400
Cpgi18656 7 27402707 to 27403003 296 CpG island CpG island 18656
Cpgi18657 7 27404077 to 27405090 1013 CpG island CpG island 18657
Cpgi18658 7 27407881 to 27409430 1549 CpG island CpG island 18658
Cpgi18659 7 27432983 to 27433314 331 CpG island CpG island 18659
Gm44924 7 27433136 to 27434369 1233 + unclassified non-coding RNA gene predicted gene 44924
Cpgi18660 7 27446082 to 27447296 1214 CpG island CpG island 18660
Tssr71401 7 27446717 to 27446748 31 - TSS region transcription start site region 71401
Cpgi18661 7 27447569 to 27448482 913 CpG island CpG island 18661
Blvrb 7 27447978 to 27465981 18003 + protein coding gene biliverdin reductase B (flavin reductase (NADPH))
Tssr65266 7 27447995 to 27448046 51 + TSS region transcription start site region 65266
Tssr65267 7 27448051 to 27448069 18 + TSS region transcription start site region 65267
Tssr65268 7 27452417 to 27452469 52 + TSS region transcription start site region 65268
Tssr65269 7 27456002 to 27456006 4 + TSS region transcription start site region 65269
Tssr65270 7 27459324 to 27459344 20 + TSS region transcription start site region 65270
Tssr65271 7 27459346 to 27459370 24 + TSS region transcription start site region 65271
Tssr65272 7 27459371 to 27459391 20 + TSS region transcription start site region 65272
Tssr65273 7 27461440 to 27461443 3 + TSS region transcription start site region 65273
Tssr65274 7 27461693 to 27461703 10 + TSS region transcription start site region 65274
Tssr65275 7 27462557 to 27462575 18 + TSS region transcription start site region 65275
Tssr65276 7 27462579 to 27462604 25 + TSS region transcription start site region 65276
Tssr65277 7 27462607 to 27462622 15 + TSS region transcription start site region 65277
Tssr65278 7 27462655 to 27462669 14 + TSS region transcription start site region 65278
Tssr65279 7 27465715 to 27465732 17 + TSS region transcription start site region 65279
Tssr71402 7 27465735 to 27465775 40 - TSS region transcription start site region 71402
Tssr71403 7 27465868 to 27465896 28 - TSS region transcription start site region 71403
Pgam1-ps2 7 27469771 to 27470535 764 - pseudogene phosphoglycerate mutase 1, pseudogene 2
Cpgi18662 7 27473183 to 27474776 1593 CpG island CpG island 18662
Tssr65280 7 27473761 to 27473773 12 + TSS region transcription start site region 65280
Tssr65281 7 27473782 to 27473819 37 + TSS region transcription start site region 65281
Sertad3 7 27473840 to 27477364 3524 + protein coding gene SERTA domain containing 3
Gm38972 7 27480521 to 27486840 6319 - lncRNA gene predicted gene, 38972
Tssr71404 7 27486226 to 27486231 5 - TSS region transcription start site region 71404
Cpgi18663 7 27486716 to 27487666 950 CpG island CpG island 18663
Tssr71405 7 27486776 to 27486804 28 - TSS region transcription start site region 71405
Tssr65282 7 27486946 to 27486960 14 + TSS region transcription start site region 65282
Sertad1 7 27486953 to 27490314 3361 + protein coding gene SERTA domain containing 1
Tssr2153 7 27487127 to 27487162 35 + TSS region transcription start site region 2153
Cpgi18664 7 27490612 to 27490776 164 CpG island CpG island 18664
Tssr65283 7 27497335 to 27497346 11 + TSS region transcription start site region 65283
Prx 7 27499305 to 27520041 20736 + protein coding gene periaxin
Tssr65284 7 27499315 to 27499331 16 + TSS region transcription start site region 65284
Gm15541 7 27502719 to 27507831 5112 - antisense lncRNA gene predicted gene 15541
Cpgi18665 7 27507746 to 27508329 583 CpG island CpG island 18665
Tssr65285 7 27507840 to 27507860 20 + TSS region transcription start site region 65285
Tssr71406 7 27508091 to 27508110 19 - TSS region transcription start site region 71406
Cpgi18666 7 27515318 to 27515542 224 CpG island CpG island 18666
Tssr65286 7 27523233 to 27523242 9 + TSS region transcription start site region 65286
Tssr65287 7 27523252 to 27523269 17 + TSS region transcription start site region 65287
Hipk4 7 27523267 to 27531175 7908 + protein coding gene homeodomain interacting protein kinase 4
Tssr65288 7 27523276 to 27523285 9 + TSS region transcription start site region 65288
Tssr71407 7 27531712 to 27531737 25 - TSS region transcription start site region 71407
Pld3 7 27532000 to 27553218 21218 - protein coding gene phospholipase D family, member 3
Tssr71408 7 27532463 to 27532479 16 - TSS region transcription start site region 71408
Tssr71409 7 27532624 to 27532654 30 - TSS region transcription start site region 71409
Tssr65289 7 27533645 to 27533672 27 + TSS region transcription start site region 65289
Tssr71410 7 27533697 to 27533709 12 - TSS region transcription start site region 71410
Tssr71411 7 27533721 to 27533734 13 - TSS region transcription start site region 71411
Tssr71412 7 27535309 to 27535336 27 - TSS region transcription start site region 71412
Tssr65290 7 27535804 to 27535825 21 + TSS region transcription start site region 65290
Tssr71413 7 27535878 to 27535909 31 - TSS region transcription start site region 71413
Tssr71414 7 27535913 to 27535934 21 - TSS region transcription start site region 71414
Tssr65291 7 27537573 to 27537596 23 + TSS region transcription start site region 65291
Tssr65292 7 27537602 to 27537645 43 + TSS region transcription start site region 65292
Tssr71415 7 27537750 to 27537779 29 - TSS region transcription start site region 71415
Tssr65293 7 27541084 to 27541112 28 + TSS region transcription start site region 65293
Tssr71416 7 27541200 to 27541243 43 - TSS region transcription start site region 71416
Tssr65294 7 27541654 to 27541704 50 + TSS region transcription start site region 65294
Tssr71417 7 27541705 to 27541728 23 - TSS region transcription start site region 71417
Tssr71418 7 27541733 to 27541751 18 - TSS region transcription start site region 71418
Tssr71419 7 27541778 to 27541798 20 - TSS region transcription start site region 71419
Tssr71420 7 27541800 to 27541835 35 - TSS region transcription start site region 71420
Tssr71421 7 27541953 to 27541993 40 - TSS region transcription start site region 71421
Tssr71422 7 27542329 to 27542352 23 - TSS region transcription start site region 71422
Cpgi18667 7 27542614 to 27542955 341 CpG island CpG island 18667
Tssr71423 7 27542774 to 27542809 35 - TSS region transcription start site region 71423
Tssr71424 7 27545124 to 27545160 36 - TSS region transcription start site region 71424
Tssr65295 7 27545305 to 27545329 24 + TSS region transcription start site region 65295
Cpgi18668 7 27552802 to 27553652 850 CpG island CpG island 18668
Tssr71425 7 27553014 to 27553070 56 - TSS region transcription start site region 71425
Tssr71426 7 27553104 to 27553115 11 - TSS region transcription start site region 71426
Tssr71427 7 27553138 to 27553249 111 - TSS region transcription start site region 71427
Tssr65296 7 27553244 to 27553302 58 + TSS region transcription start site region 65296
2310022A10Rik 7 27553260 to 27582099 28839 + protein coding gene RIKEN cDNA 2310022A10 gene
Gm45975 7 27556544 to 27559504 2960 + protein coding gene predicted gene, 45975
Tssr65297 7 27556681 to 27556684 3 + TSS region transcription start site region 65297
Tssr65298 7 27560451 to 27560468 17 + TSS region transcription start site region 65298
Tssr65299 7 27560470 to 27560496 26 + TSS region transcription start site region 65299
Tssr65300 7 27560498 to 27560516 18 + TSS region transcription start site region 65300
Tssr65301 7 27560527 to 27560555 28 + TSS region transcription start site region 65301
Tssr65302 7 27566390 to 27566414 24 + TSS region transcription start site region 65302
Tssr71428 7 27572167 to 27572181 14 - TSS region transcription start site region 71428
Tssr65303 7 27574390 to 27574480 90 + TSS region transcription start site region 65303
Tssr65304 7 27575729 to 27575748 19 + TSS region transcription start site region 65304
Tssr65305 7 27580905 to 27580918 13 + TSS region transcription start site region 65305
Tssr65306 7 27581225 to 27581258 33 + TSS region transcription start site region 65306
Tssr65307 7 27581261 to 27581277 16 + TSS region transcription start site region 65307
Gm18046 7 27588410 to 27588946 536 - pseudogene predicted gene, 18046
Cpgi18669 7 27591507 to 27592407 900 CpG island CpG island 18669
Tssr65308 7 27591513 to 27591562 49 + TSS region transcription start site region 65308
Akt2 7 27591557 to 27639453 47896 + protein coding gene thymoma viral proto-oncogene 2
Tssr65309 7 27591607 to 27591651 44 + TSS region transcription start site region 65309
Tssr65310 7 27591705 to 27591778 73 + TSS region transcription start site region 65310
Tssr65311 7 27592727 to 27592745 18 + TSS region transcription start site region 65311
Tssr65312 7 27592776 to 27592790 14 + TSS region transcription start site region 65312
Tssr65313 7 27597052 to 27597109 57 + TSS region transcription start site region 65313
Tssr65314 7 27605801 to 27605841 40 + TSS region transcription start site region 65314
Tssr65315 7 27605847 to 27605860 13 + TSS region transcription start site region 65315
D7Mit77 7 27606373 to 27606511 138 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 77
Spir1 7 27606373 to 27606511 138 QTL Streptococcus pneumoniae infection resistance 1
Asp3 7 27606373 to 37142942 9536569 QTL audiogenic seizure prone 3
Tssr65316 7 27607758 to 27607804 46 + TSS region transcription start site region 65316
Tssr65317 7 27607997 to 27608009 12 + TSS region transcription start site region 65317
Tssr65318 7 27608075 to 27608096 21 + TSS region transcription start site region 65318
Tssr65319 7 27618081 to 27618100 19 + TSS region transcription start site region 65319
Tssr65320 7 27619351 to 27619354 3 + TSS region transcription start site region 65320
Gm38973 7 27649426 to 27651059 1633 - lncRNA gene predicted gene, 38973
Tssr65321 7 27649897 to 27649902 5 + TSS region transcription start site region 65321
Cpgi18670 7 27653582 to 27654425 843 CpG island CpG island 18670
Tssr65322 7 27653881 to 27653900 19 + TSS region transcription start site region 65322
Tssr65323 7 27653906 to 27653960 54 + TSS region transcription start site region 65323
Ttc9b 7 27653924 to 27656207 2283 + protein coding gene tetratricopeptide repeat domain 9B
Tssr65324 7 27653994 to 27654007 13 + TSS region transcription start site region 65324
Map3k10 7 27656375 to 27674598 18223 - protein coding gene mitogen-activated protein kinase kinase kinase 10
Cpgi18671 7 27657766 to 27658741 975 CpG island CpG island 18671
1500037F05Rik 7 27670932 to 27671782 850 unclassified gene RIKEN cDNA 1500037F05 gene
Cpgi18672 7 27673359 to 27675113 1754 CpG island CpG island 18672
Tssr71429 7 27674516 to 27674630 114 - TSS region transcription start site region 71429
Gm44684 7 27674659 to 27677844 3185 - unclassified non-coding RNA gene predicted gene 44684
Gm45976 7 27678831 to 27690211 11380 - lncRNA gene predicted gene, 45976
Zfp607b 7 27689340 to 27706484 17144 + protein coding gene zinc finger protein 607B
Tssr65325 7 27689529 to 27689572 43 + TSS region transcription start site region 65325
Phf5b-ps 7 27709721 to 27710513 792 + pseudogene PHD finger protein 5B, pseudogene
Cpgi18673 7 27731174 to 27731963 789 CpG island CpG island 18673
Tssr65326 7 27731373 to 27731397 24 + TSS region transcription start site region 65326
Tssr65327 7 27731398 to 27731441 43 + TSS region transcription start site region 65327
Zfp60 7 27731409 to 27751689 20280 + protein coding gene zinc finger protein 60
Tssr65328 7 27731445 to 27731456 11 + TSS region transcription start site region 65328
Tssr65329 7 27731612 to 27731621 9 + TSS region transcription start site region 65329
Tssr65330 7 27749545 to 27749550 5 + TSS region transcription start site region 65330
Tssr71430 7 27761332 to 27761353 21 - TSS region transcription start site region 71430
Tssr65331 7 27765659 to 27765732 73 + TSS region transcription start site region 65331
Gm10046 7 27765673 to 27770972 5299 + pseudogene predicted gene 10046
Cpgi18674 7 27766277 to 27766471 194 CpG island CpG island 18674
Gm29810 7 27784377 to 27795483 11106 + pseudogene predicted gene, 29810
Cpgi18675 7 27804727 to 27805055 328 CpG island CpG island 18675
Tssr65332 7 27804819 to 27804872 53 + TSS region transcription start site region 65332
Tssr65333 7 27804882 to 27804894 12 + TSS region transcription start site region 65333
Zfp626 7 27807196 to 27822916 15720 + protein coding gene zinc finger protein 626
Cpgi18676 7 27838467 to 27838622 155 CpG island CpG island 18676
Tssr65334 7 27838542 to 27838556 14 + TSS region transcription start site region 65334
Tssr65335 7 27838560 to 27838612 52 + TSS region transcription start site region 65335
Zfp59 7 27838607 to 27856438 17831 + protein coding gene zinc finger protein 59
Zfp607a 7 27857527 to 27880825 23298 + protein coding gene zinc finger protein 607A
Tssr65336 7 27860552 to 27860564 12 + TSS region transcription start site region 65336
Tssr65337 7 27860566 to 27860640 74 + TSS region transcription start site region 65337
Cpgi18677 7 27860567 to 27860898 331 CpG island CpG island 18677
Tssr71431 7 27861028 to 27861039 11 - TSS region transcription start site region 71431