Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:27333136-27534369

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ltbp4 7 27305136 to 27337692 32556 - protein coding gene latent transforming growth factor beta binding protein 4
Gm30543 7 27329804 to 27336812 7008 + lncRNA gene predicted gene, 30543
Cpgi18645 7 27332393 to 27334916 2523 CpG island CpG island 18645
Tssr71388 7 27333602 to 27333640 38 - TSS region transcription start site region 71388
Cpgi18646 7 27335983 to 27336774 791 CpG island CpG island 18646
Cpgi18647 7 27337375 to 27337842 467 CpG island CpG island 18647
Tssr71389 7 27337582 to 27337616 34 - TSS region transcription start site region 71389
Tssr71390 7 27337667 to 27337680 13 - TSS region transcription start site region 71390
Tssr71391 7 27339692 to 27339709 17 - TSS region transcription start site region 71391
Shkbp1 7 27342133 to 27356019 13886 - protein coding gene Sh3kbp1 binding protein 1
Gm20479 7 27352649 to 27357419 4770 - protein coding gene predicted gene 20479
Tssr71392 7 27355699 to 27355729 30 - TSS region transcription start site region 71392
Cpgi18648 7 27355812 to 27356478 666 CpG island CpG island 18648
Tssr71393 7 27355944 to 27355977 33 - TSS region transcription start site region 71393
Tssr71394 7 27355980 to 27356014 34 - TSS region transcription start site region 71394
Sptbn4 7 27356383 to 27447686 91303 - protein coding gene spectrin beta, non-erythrocytic 4
Cpgi18649 7 27357145 to 27357540 395 CpG island CpG island 18649
Tssr71395 7 27360112 to 27360136 24 - TSS region transcription start site region 71395
Tssr71396 7 27361328 to 27361340 12 - TSS region transcription start site region 71396
Tssr71397 7 27361343 to 27361360 17 - TSS region transcription start site region 71397
Cpgi18650 7 27361371 to 27362017 646 CpG island CpG island 18650
Cpgi18651 7 27363755 to 27364749 994 CpG island CpG island 18651
Tssr71398 7 27366534 to 27366564 30 - TSS region transcription start site region 71398
Cpgi18652 7 27367475 to 27368023 548 CpG island CpG island 18652
Cpgi18653 7 27371879 to 27372530 651 CpG island CpG island 18653
Cpgi18654 7 27375237 to 27375687 450 CpG island CpG island 18654
Cpgi18655 7 27396090 to 27397089 999 CpG island CpG island 18655
Tssr71399 7 27396542 to 27396566 24 - TSS region transcription start site region 71399
Tssr71400 7 27396570 to 27396615 45 - TSS region transcription start site region 71400
Cpgi18656 7 27402707 to 27403003 296 CpG island CpG island 18656
Cpgi18657 7 27404077 to 27405090 1013 CpG island CpG island 18657
Cpgi18658 7 27407881 to 27409430 1549 CpG island CpG island 18658
Cpgi18659 7 27432983 to 27433314 331 CpG island CpG island 18659
Gm44924 7 27433136 to 27434369 1233 + unclassified non-coding RNA gene predicted gene 44924
Cpgi18660 7 27446082 to 27447296 1214 CpG island CpG island 18660
Tssr71401 7 27446717 to 27446748 31 - TSS region transcription start site region 71401
Cpgi18661 7 27447569 to 27448482 913 CpG island CpG island 18661
Blvrb 7 27447978 to 27465981 18003 + protein coding gene biliverdin reductase B (flavin reductase (NADPH))
Tssr65266 7 27447995 to 27448046 51 + TSS region transcription start site region 65266
Tssr65267 7 27448051 to 27448069 18 + TSS region transcription start site region 65267
Tssr65268 7 27452417 to 27452469 52 + TSS region transcription start site region 65268
Tssr65269 7 27456002 to 27456006 4 + TSS region transcription start site region 65269
Tssr65270 7 27459324 to 27459344 20 + TSS region transcription start site region 65270
Tssr65271 7 27459346 to 27459370 24 + TSS region transcription start site region 65271
Tssr65272 7 27459371 to 27459391 20 + TSS region transcription start site region 65272
Tssr65273 7 27461440 to 27461443 3 + TSS region transcription start site region 65273
Tssr65274 7 27461693 to 27461703 10 + TSS region transcription start site region 65274
Tssr65275 7 27462557 to 27462575 18 + TSS region transcription start site region 65275
Tssr65276 7 27462579 to 27462604 25 + TSS region transcription start site region 65276
Tssr65277 7 27462607 to 27462622 15 + TSS region transcription start site region 65277
Tssr65278 7 27462655 to 27462669 14 + TSS region transcription start site region 65278
Tssr65279 7 27465715 to 27465732 17 + TSS region transcription start site region 65279
Tssr71402 7 27465735 to 27465775 40 - TSS region transcription start site region 71402
Tssr71403 7 27465868 to 27465896 28 - TSS region transcription start site region 71403
Pgam1-ps2 7 27469771 to 27470535 764 - pseudogene phosphoglycerate mutase 1, pseudogene 2
Cpgi18662 7 27473183 to 27474776 1593 CpG island CpG island 18662
Tssr65280 7 27473761 to 27473773 12 + TSS region transcription start site region 65280
Tssr65281 7 27473782 to 27473819 37 + TSS region transcription start site region 65281
Sertad3 7 27473840 to 27477364 3524 + protein coding gene SERTA domain containing 3
Gm38972 7 27480521 to 27486840 6319 - lncRNA gene predicted gene, 38972
Tssr71404 7 27486226 to 27486231 5 - TSS region transcription start site region 71404
Cpgi18663 7 27486716 to 27487666 950 CpG island CpG island 18663
Tssr71405 7 27486776 to 27486804 28 - TSS region transcription start site region 71405
Tssr65282 7 27486946 to 27486960 14 + TSS region transcription start site region 65282
Sertad1 7 27486953 to 27490314 3361 + protein coding gene SERTA domain containing 1
Tssr2153 7 27487127 to 27487162 35 + TSS region transcription start site region 2153
Cpgi18664 7 27490612 to 27490776 164 CpG island CpG island 18664
Tssr65283 7 27497335 to 27497346 11 + TSS region transcription start site region 65283
Prx 7 27499305 to 27520041 20736 + protein coding gene periaxin
Tssr65284 7 27499315 to 27499331 16 + TSS region transcription start site region 65284
Gm15541 7 27502719 to 27507831 5112 - antisense lncRNA gene predicted gene 15541
Cpgi18665 7 27507746 to 27508329 583 CpG island CpG island 18665
Tssr65285 7 27507840 to 27507860 20 + TSS region transcription start site region 65285
Tssr71406 7 27508091 to 27508110 19 - TSS region transcription start site region 71406
Cpgi18666 7 27515318 to 27515542 224 CpG island CpG island 18666
Tssr65286 7 27523233 to 27523242 9 + TSS region transcription start site region 65286
Tssr65287 7 27523252 to 27523269 17 + TSS region transcription start site region 65287
Hipk4 7 27523267 to 27531175 7908 + protein coding gene homeodomain interacting protein kinase 4
Tssr65288 7 27523276 to 27523285 9 + TSS region transcription start site region 65288
Tssr71407 7 27531712 to 27531737 25 - TSS region transcription start site region 71407
Pld3 7 27532000 to 27553218 21218 - protein coding gene phospholipase D family, member 3
Tssr71408 7 27532463 to 27532479 16 - TSS region transcription start site region 71408
Tssr71409 7 27532624 to 27532654 30 - TSS region transcription start site region 71409
Tssr65289 7 27533645 to 27533672 27 + TSS region transcription start site region 65289
Tssr71410 7 27533697 to 27533709 12 - TSS region transcription start site region 71410
Tssr71411 7 27533721 to 27533734 13 - TSS region transcription start site region 71411