Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:25539889-26482391

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4732471J01Rik 7 25376819 to 25566417 189598 + antisense lncRNA gene RIKEN cDNA 4732471J01 gene
Tssr71272 7 25539915 to 25539933 18 - TSS region transcription start site region 71272
Tssr71273 7 25539950 to 25539955 5 - TSS region transcription start site region 71273
Gm29918 7 25577074 to 25577798 724 - lincRNA gene predicted gene, 29918
Gm38569 7 25584224 to 25594776 10552 + lincRNA gene predicted gene, 38569
Tssr65137 7 25601285 to 25601294 9 + TSS region transcription start site region 65137
Gm4607 7 25601326 to 25601902 576 + pseudogene predicted gene 4607
Cpgi18605 7 25601375 to 25601546 171 CpG island CpG island 18605
Erich4 7 25614621 to 25615892 1271 - protein coding gene glutamate rich 4
Tssr71274 7 25615807 to 25615814 7 - TSS region transcription start site region 71274
Tssr71275 7 25615835 to 25615859 24 - TSS region transcription start site region 71275
Tssr71276 7 25615874 to 25615886 12 - TSS region transcription start site region 71276
D7Mit113 7 25616709 to 25616885 176 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 113
Gm38969 7 25618668 to 25619524 856 - lncRNA gene predicted gene, 38969
Cpgi18606 7 25619059 to 25619761 702 CpG island CpG island 18606
Tssr65138 7 25619404 to 25619446 42 + TSS region transcription start site region 65138
Dmac2 7 25619414 to 25625550 6136 + protein coding gene distal membrane arm assembly complex 2
Tssr65139 7 25627154 to 25627168 14 + TSS region transcription start site region 65139
Tssr65140 7 25627181 to 25627196 15 + TSS region transcription start site region 65140
Cpgi18607 7 25627335 to 25627540 205 CpG island CpG island 18607
B3gnt8 7 25627588 to 25629492 1904 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
Tssr65141 7 25627604 to 25627652 48 + TSS region transcription start site region 65141
Bckdha 7 25629852 to 25658785 28933 - protein coding gene branched chain ketoacid dehydrogenase E1, alpha polypeptide
Cpgi18608 7 25633163 to 25633384 221 CpG island CpG island 18608
Tssr65142 7 25644897 to 25644900 3 + TSS region transcription start site region 65142
B230201I24Rik 7 25650482 to 25651138 656 unclassified gene RIKEN cDNA B230201I24 gene
Tssr71277 7 25651333 to 25651375 42 - TSS region transcription start site region 71277
Tssr71278 7 25655847 to 25655851 4 - TSS region transcription start site region 71278
Cpgi18609 7 25658629 to 25659485 856 CpG island CpG island 18609
Tssr71279 7 25658726 to 25658761 35 - TSS region transcription start site region 71279
Tssr65143 7 25659148 to 25659157 9 + TSS region transcription start site region 65143
Exosc5 7 25659153 to 25668032 8879 + protein coding gene exosome component 5
Tssr65144 7 25659164 to 25659236 72 + TSS region transcription start site region 65144
Tssr65145 7 25659401 to 25659409 8 + TSS region transcription start site region 65145
Tssr65146 7 25659424 to 25659446 22 + TSS region transcription start site region 65146
Tssr65147 7 25659450 to 25659461 11 + TSS region transcription start site region 65147
Tmem91 7 25669139 to 25675166 6027 - protein coding gene transmembrane protein 91
Tssr65148 7 25670443 to 25670448 5 + TSS region transcription start site region 65148
Cpgi18610 7 25674591 to 25675239 648 CpG island CpG island 18610
Tssr71280 7 25675100 to 25675187 87 - TSS region transcription start site region 71280
D7Mit265 7 25678573 to 25678697 124 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 265
Tssr71281 7 25679061 to 25679108 47 - TSS region transcription start site region 71281
Cpgi18611 7 25680556 to 25681152 596 CpG island CpG island 18611
B9d2 7 25680780 to 25686558 5778 + protein coding gene B9 protein domain 2
Tssr65149 7 25680780 to 25680834 54 + TSS region transcription start site region 65149
Tssr65150 7 25680842 to 25680861 19 + TSS region transcription start site region 65150
Tssr71282 7 25681018 to 25681034 16 - TSS region transcription start site region 71282
Tssr65151 7 25681177 to 25681191 14 + TSS region transcription start site region 65151
Cpgi18612 7 25686113 to 25688296 2183 CpG island CpG island 18612
Tssr65152 7 25686994 to 25687012 18 + TSS region transcription start site region 65152
Tgfb1 7 25687002 to 25705077 18075 + protein coding gene transforming growth factor, beta 1
Skts14 7 25687002 to 25705077 18075 QTL skin tumor susceptibility 14
Tssr65153 7 25687125 to 25687136 11 + TSS region transcription start site region 65153
Tssr71283 7 25687264 to 25687279 15 - TSS region transcription start site region 71283
Tssr65154 7 25687277 to 25687341 64 + TSS region transcription start site region 65154
Tssr65155 7 25687365 to 25687377 12 + TSS region transcription start site region 65155
Tssr65156 7 25687481 to 25687540 59 + TSS region transcription start site region 65156
Tssr71284 7 25687537 to 25687573 36 - TSS region transcription start site region 71284
Tssr65157 7 25687541 to 25687569 28 + TSS region transcription start site region 65157
Tssr65158 7 25687571 to 25687583 12 + TSS region transcription start site region 65158
Tssr65159 7 25687637 to 25687648 11 + TSS region transcription start site region 65159
Tssr65160 7 25687838 to 25687882 44 + TSS region transcription start site region 65160
Tssr65161 7 25688094 to 25688123 29 + TSS region transcription start site region 65161
Tssr65162 7 25688129 to 25688148 19 + TSS region transcription start site region 65162
Cpgi18613 7 25688604 to 25689688 1084 CpG island CpG island 18613
Tssr71285 7 25689100 to 25689109 9 - TSS region transcription start site region 71285
Tssr71286 7 25689120 to 25689141 21 - TSS region transcription start site region 71286
Tssr71287 7 25689148 to 25689169 21 - TSS region transcription start site region 71287
Tssr65163 7 25694238 to 25694253 15 + TSS region transcription start site region 65163
Tssr65164 7 25697191 to 25697206 15 + TSS region transcription start site region 65164
Tssr65165 7 25704170 to 25704223 53 + TSS region transcription start site region 65165
Cpgi18614 7 25704714 to 25705193 479 CpG island CpG island 18614
Tssr65166 7 25704777 to 25704802 25 + TSS region transcription start site region 65166
Tssr65167 7 25704809 to 25704833 24 + TSS region transcription start site region 65167
Ccdc97 7 25711106 to 25719088 7982 - protein coding gene coiled-coil domain containing 97
Tssr71288 7 25712133 to 25712147 14 - TSS region transcription start site region 71288
Tssr71289 7 25712558 to 25712569 11 - TSS region transcription start site region 71289
Tssr71290 7 25718684 to 25718723 39 - TSS region transcription start site region 71290
Tssr71291 7 25718801 to 25718815 14 - TSS region transcription start site region 71291
Cpgi18615 7 25718848 to 25719253 405 CpG island CpG island 18615
Tssr71292 7 25718976 to 25719062 86 - TSS region transcription start site region 71292
Tssr65168 7 25719178 to 25719181 3 + TSS region transcription start site region 65168
Hnrnpul1 7 25721165 to 25754757 33592 - protein coding gene heterogeneous nuclear ribonucleoprotein U-like 1
Tssr71293 7 25721718 to 25721728 10 - TSS region transcription start site region 71293
Tssr71294 7 25722856 to 25722878 22 - TSS region transcription start site region 71294
Tssr65169 7 25722885 to 25722897 12 + TSS region transcription start site region 65169
Tssr71295 7 25722925 to 25722956 31 - TSS region transcription start site region 71295
Tssr71296 7 25724733 to 25724835 102 - TSS region transcription start site region 71296
Tssr71297 7 25726014 to 25726049 35 - TSS region transcription start site region 71297
Tssr71298 7 25733092 to 25733112 20 - TSS region transcription start site region 71298
Tssr71299 7 25736955 to 25736960 5 - TSS region transcription start site region 71299
Tssr71300 7 25745230 to 25745242 12 - TSS region transcription start site region 71300
Tssr71301 7 25748423 to 25748458 35 - TSS region transcription start site region 71301
D7Mit307 7 25752242 to 25752347 105 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 307
Cpgi18616 7 25753949 to 25755333 1384 CpG island CpG island 18616
Tssr71302 7 25754566 to 25754577 11 - TSS region transcription start site region 71302
Tssr71303 7 25754629 to 25754640 11 - TSS region transcription start site region 71303
Tssr71304 7 25754681 to 25754692 11 - TSS region transcription start site region 71304
Tssr71305 7 25754706 to 25754750 44 - TSS region transcription start site region 71305
Tssr71306 7 25754752 to 25754771 19 - TSS region transcription start site region 71306
Tssr71307 7 25754801 to 25754810 9 - TSS region transcription start site region 71307
Tssr65170 7 25754895 to 25754933 38 + TSS region transcription start site region 65170
Tssr71308 7 25754952 to 25754963 11 - TSS region transcription start site region 71308
Tssr71309 7 25755110 to 25755160 50 - TSS region transcription start site region 71309
Tssr71310 7 25755203 to 25755214 11 - TSS region transcription start site region 71310
Tssr71311 7 25755256 to 25755276 20 - TSS region transcription start site region 71311
Tssr65171 7 25755471 to 25755474 3 + TSS region transcription start site region 65171
Cpgi18617 7 25755671 to 25756245 574 CpG island CpG island 18617
Tssr71312 7 25756078 to 25756097 19 - TSS region transcription start site region 71312
Tssr71313 7 25756121 to 25756138 17 - TSS region transcription start site region 71313
Tssr71314 7 25756178 to 25756198 20 - TSS region transcription start site region 71314
Axl 7 25757273 to 25788705 31432 - protein coding gene AXL receptor tyrosine kinase
Tssr71315 7 25772162 to 25772186 24 - TSS region transcription start site region 71315
Tssr71316 7 25772190 to 25772223 33 - TSS region transcription start site region 71316
Tssr71317 7 25772226 to 25772320 94 - TSS region transcription start site region 71317
Cpgi18618 7 25781450 to 25781906 456 CpG island CpG island 18618
Tssr71318 7 25786993 to 25787006 13 - TSS region transcription start site region 71318
Tssr71319 7 25787049 to 25787062 13 - TSS region transcription start site region 71319
Tssr71320 7 25787406 to 25787418 12 - TSS region transcription start site region 71320
Tssr71321 7 25788493 to 25788513 20 - TSS region transcription start site region 71321
Tssr71322 7 25788514 to 25788525 11 - TSS region transcription start site region 71322
Tssr71323 7 25788533 to 25788554 21 - TSS region transcription start site region 71323
Tssr71324 7 25788635 to 25788710 75 - TSS region transcription start site region 71324
Gm29763 7 25792228 to 25792843 615 - pseudogene predicted gene, 29763
Tssr2150 7 25801231 to 25801233 2 + TSS region transcription start site region 2150
Tssr71325 7 25801921 to 25801925 4 - TSS region transcription start site region 71325
Cyp2s1 7 25802476 to 25816530 14054 - protein coding gene cytochrome P450, family 2, subfamily s, polypeptide 1
Del(7Cyp2s1-Cyp2a5)1Ding 7 25802476 to 26843264 1040788 chromosomal deletion deletion, Chr 7, Xinxin Ding 1
Tssr71326 7 25803431 to 25803450 19 - TSS region transcription start site region 71326
Tssr71327 7 25803613 to 25803629 16 - TSS region transcription start site region 71327
Cpgi18619 7 25805765 to 25806089 324 CpG island CpG island 18619
Gm45226 7 25810175 to 25810462 287 + pseudogene predicted gene 45226
Cpgi18620 7 25816267 to 25816932 665 CpG island CpG island 18620
Tssr71328 7 25816500 to 25816535 35 - TSS region transcription start site region 71328
Tssr71329 7 25816548 to 25816563 15 - TSS region transcription start site region 71329
Tssr71330 7 25816565 to 25816568 3 - TSS region transcription start site region 71330
Tssr71331 7 25816616 to 25816628 12 - TSS region transcription start site region 71331
Gm26707 7 25816654 to 25820654 4000 + lincRNA gene predicted gene, 26707
Tssr71332 7 25816680 to 25816723 43 - TSS region transcription start site region 71332
Gm4613 7 25828602 to 25828877 275 - pseudogene predicted gene 4613
Gm24865 7 25828632 to 25828727 95 - miRNA gene predicted gene, 24865
Gm46015 7 25837950 to 25839958 2008 + lncRNA gene predicted gene, 46015
Gm30146 7 25860140 to 25869883 9743 + lincRNA gene predicted gene, 30146
Gm23921 7 25868945 to 25869051 106 + unclassified non-coding RNA gene predicted gene, 23921
Gm45228 7 25875325 to 25875676 351 + pseudogene predicted gene 45228
Gm6434 7 25882018 to 25882389 371 - pseudogene predicted gene 6434
Tssr65172 7 25897651 to 25897672 21 + TSS region transcription start site region 65172
Cyp2b10 7 25897658 to 25926624 28966 + protein coding gene cytochrome P450, family 2, subfamily b, polypeptide 10
Tssr65173 7 25899575 to 25899582 7 + TSS region transcription start site region 65173
Tssr65174 7 25913937 to 25913946 9 + TSS region transcription start site region 65174
Cyp2b28-ps 7 25950226 to 25988455 38229 + pseudogene cytochrome P450, family 2, subfamily b, polypeptide 28, pseudogene
Gm45227 7 25950253 to 25950421 168 + pseudogene predicted gene 45227
Gm45225 7 25981502 to 25988460 6958 + pseudogene predicted gene 45225
Cyp2b27-ps 7 26004608 to 26028897 24289 - pseudogene cytochrome P450, family 2, subfamily b, polypeptide 27, pseudogene
BC026762 7 26009889 to 26012391 2502 + lincRNA gene cDNA sequence BC026762
Cyp2b13 7 26061497 to 26096197 34700 + protein coding gene cytochrome P450, family 2, subfamily b, polypeptide 13
Cpgi18621 7 26071869 to 26072049 180 CpG island CpG island 18621
Rnf170-ps 7 26072073 to 26072931 858 + pseudogene ring finger protein 170, pseudogene
Tssr65175 7 26099125 to 26099129 4 + TSS region transcription start site region 65175
Gm29920 7 26099567 to 26100316 749 - pseudogene predicted gene, 29920
Cyp2b26-ps 7 26134753 to 26148592 13839 - pseudogene cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene
Cyp2b9 7 26173411 to 26210661 37250 + protein coding gene cytochrome P450, family 2, subfamily b, polypeptide 9
Tssr65176 7 26174214 to 26174217 3 + TSS region transcription start site region 65176
Tssr65177 7 26187725 to 26187730 5 + TSS region transcription start site region 65177
Tssr71333 7 26188042 to 26188045 3 - TSS region transcription start site region 71333
Tssr71334 7 26188141 to 26188150 9 - TSS region transcription start site region 71334
Tssr65178 7 26189876 to 26189895 19 + TSS region transcription start site region 65178
Tssr65179 7 26215339 to 26215342 3 + TSS region transcription start site region 65179
Tssr65180 7 26221914 to 26221918 4 + TSS region transcription start site region 65180
Tssr2151 7 26222807 to 26222813 6 + TSS region transcription start site region 2151
Tssr65181 7 26224222 to 26224231 9 + TSS region transcription start site region 65181
Gm8902 7 26245903 to 26247955 2052 + pseudogene predicted gene 8902
Vmn1r-ps86 7 26255080 to 26255626 546 + pseudogene vomeronasal 1 receptor, pseudogene 86
Vmn1r184 7 26266831 to 26267775 944 + protein coding gene vomeronasal 1 receptor, 184
Gm44964 7 26292378 to 26292768 390 + pseudogene predicted gene 44964
Gm42375 7 26304421 to 26307094 2673 - antisense lncRNA gene predicted gene, 42375
Tssr65182 7 26307191 to 26307197 6 + TSS region transcription start site region 65182
Cyp2a4 7 26307192 to 26315088 7896 + protein coding gene cytochrome P450, family 2, subfamily a, polypeptide 4
Nlrp9c 7 26364887 to 26403700 38813 - protein coding gene NLR family, pyrin domain containing 9C
Tssr65183 7 26386902 to 26386915 13 + TSS region transcription start site region 65183
Nlrp4a 7 26435113 to 26476142 41029 + protein coding gene NLR family, pyrin domain containing 4A
D7Mit112 7 26472526 to 26472669 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 112