Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:25264656-28264668

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890 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18589 7 25267178 to 25268616 1438 CpG island CpG island 18589
Tssr71214 7 25267408 to 25267421 13 - TSS region transcription start site region 71214
Tssr65099 7 25267669 to 25267723 54 + TSS region transcription start site region 65099
Cic 7 25267704 to 25294159 26455 + protein coding gene capicua transcriptional repressor
Gm45974 7 25267755 to 25270827 3072 - lncRNA gene predicted gene, 45974
Tssr65100 7 25268394 to 25268420 26 + TSS region transcription start site region 65100
Tssr65101 7 25268440 to 25268454 14 + TSS region transcription start site region 65101
Cpgi18590 7 25278312 to 25279836 1524 CpG island CpG island 18590
Tssr71215 7 25278753 to 25278763 10 - TSS region transcription start site region 71215
Tssr65102 7 25279619 to 25279649 30 + TSS region transcription start site region 65102
Cpgi18591 7 25281571 to 25283408 1837 CpG island CpG island 18591
Tssr65103 7 25282193 to 25282216 23 + TSS region transcription start site region 65103
Tssr65104 7 25282223 to 25282254 31 + TSS region transcription start site region 65104
Tssr65105 7 25282600 to 25282683 83 + TSS region transcription start site region 65105
Tssr65106 7 25282784 to 25282795 11 + TSS region transcription start site region 65106
Tssr65107 7 25284921 to 25284933 12 + TSS region transcription start site region 65107
Tssr65108 7 25289377 to 25289389 12 + TSS region transcription start site region 65108
Tssr65109 7 25289492 to 25289510 18 + TSS region transcription start site region 65109
Tssr65110 7 25291083 to 25291098 15 + TSS region transcription start site region 65110
Tssr65111 7 25291194 to 25291209 15 + TSS region transcription start site region 65111
Pafah1b3 7 25295048 to 25297973 2925 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
Cpgi18592 7 25296903 to 25298104 1201 CpG island CpG island 18592
Tssr71216 7 25297478 to 25297532 54 - TSS region transcription start site region 71216
Tssr71217 7 25297548 to 25297571 23 - TSS region transcription start site region 71217
Tssr71218 7 25297582 to 25297633 51 - TSS region transcription start site region 71218
Tssr71219 7 25297636 to 25297653 17 - TSS region transcription start site region 71219
Tssr71220 7 25297675 to 25297723 48 - TSS region transcription start site region 71220
Tssr71221 7 25297732 to 25297752 20 - TSS region transcription start site region 71221
Tssr71222 7 25297866 to 25297958 92 - TSS region transcription start site region 71222
Tssr71223 7 25297967 to 25298005 38 - TSS region transcription start site region 71223
Cpgi18593 7 25301204 to 25301491 287 CpG island CpG island 18593
Tssr65112 7 25301343 to 25301362 19 + TSS region transcription start site region 65112
Tssr65113 7 25301366 to 25301380 14 + TSS region transcription start site region 65113
Prr19 7 25301411 to 25304132 2721 + protein coding gene proline rich 19
Tssr65114 7 25301416 to 25301421 5 + TSS region transcription start site region 65114
Tssr2140 7 25301468 to 25301471 3 + TSS region transcription start site region 2140
Tssr65115 7 25301476 to 25301524 48 + TSS region transcription start site region 65115
Tssr65116 7 25301528 to 25301540 12 + TSS region transcription start site region 65116
Cpgi18594 7 25305864 to 25306641 777 CpG island CpG island 18594
Tssr2141 7 25305935 to 25305960 25 + TSS region transcription start site region 2141
Tssr65117 7 25306085 to 25306157 72 + TSS region transcription start site region 65117
Tmem145 7 25306106 to 25316195 10089 + protein coding gene transmembrane protein 145
Tssr65118 7 25306220 to 25306233 13 + TSS region transcription start site region 65118
Cpgi18595 7 25314607 to 25316092 1485 CpG island CpG island 18595
Cpgi18596 7 25316671 to 25317893 1222 CpG island CpG island 18596
Tssr65119 7 25316757 to 25316903 146 + TSS region transcription start site region 65119
Tssr65120 7 25316917 to 25316968 51 + TSS region transcription start site region 65120
Tssr65121 7 25316973 to 25316992 19 + TSS region transcription start site region 65121
Tssr65122 7 25317067 to 25317131 64 + TSS region transcription start site region 65122
Megf8 7 25317164 to 25365917 48753 + protein coding gene multiple EGF-like-domains 8
Cpgi18597 7 25363187 to 25363348 161 CpG island CpG island 18597
Cnfn 7 25367620 to 25369724 2104 - protein coding gene cornifelin
Tssr71224 7 25367650 to 25367670 20 - TSS region transcription start site region 71224
Tssr71225 7 25367675 to 25367684 9 - TSS region transcription start site region 71225
Tssr71226 7 25367692 to 25367703 11 - TSS region transcription start site region 71226
Cpgi18598 7 25367806 to 25368555 749 CpG island CpG island 18598
Tssr71227 7 25368081 to 25368096 15 - TSS region transcription start site region 71227
Tssr71228 7 25369048 to 25369115 67 - TSS region transcription start site region 71228
Tssr71229 7 25369712 to 25369730 18 - TSS region transcription start site region 71229
Cpgi18599 7 25376697 to 25376863 166 CpG island CpG island 18599
4732471J01Rik 7 25376819 to 25566417 189598 + antisense lncRNA gene RIKEN cDNA 4732471J01 gene
Lipe 7 25379527 to 25398486 18959 - protein coding gene lipase, hormone sensitive
Cpgi18600 7 25379743 to 25380237 494 CpG island CpG island 18600
Tssr71230 7 25384951 to 25384958 7 - TSS region transcription start site region 71230
Tssr71231 7 25384961 to 25384972 11 - TSS region transcription start site region 71231
Tssr71232 7 25388399 to 25388424 25 - TSS region transcription start site region 71232
Gm38968 7 25388635 to 25389558 923 + lncRNA gene predicted gene, 38968
Tssr71233 7 25388971 to 25388984 13 - TSS region transcription start site region 71233
Tssr71234 7 25388986 to 25389002 16 - TSS region transcription start site region 71234
Tssr71235 7 25389012 to 25389030 18 - TSS region transcription start site region 71235
Tssr71236 7 25390098 to 25390124 26 - TSS region transcription start site region 71236
Tssr2142 7 25390125 to 25390128 3 - TSS region transcription start site region 2142
Tssr71237 7 25390128 to 25390131 3 - TSS region transcription start site region 71237
Tssr65123 7 25392270 to 25392279 9 + TSS region transcription start site region 65123
Tssr65124 7 25394287 to 25394307 20 + TSS region transcription start site region 65124
Cpgi18601 7 25395253 to 25395805 552 CpG island CpG island 18601
Tssr71238 7 25395533 to 25395538 5 - TSS region transcription start site region 71238
Tssr71239 7 25395579 to 25395587 8 - TSS region transcription start site region 71239
Tssr71240 7 25395610 to 25395695 85 - TSS region transcription start site region 71240
Cpgi18602 7 25395983 to 25396467 484 CpG island CpG island 18602
Tssr65125 7 25396177 to 25396193 16 + TSS region transcription start site region 65125
Tssr65126 7 25396446 to 25396485 39 + TSS region transcription start site region 65126
Cpgi18603 7 25396742 to 25396915 173 CpG island CpG island 18603
Tssr71241 7 25398697 to 25398719 22 - TSS region transcription start site region 71241
Cxcl17 7 25400053 to 25412886 12833 - protein coding gene chemokine (C-X-C motif) ligand 17
Tssr71242 7 25400261 to 25400298 37 - TSS region transcription start site region 71242
Tssr2143 7 25412797 to 25412802 5 - TSS region transcription start site region 2143
Tssr71243 7 25412807 to 25412816 9 - TSS region transcription start site region 71243
Tssr71244 7 25412832 to 25412841 9 - TSS region transcription start site region 71244
Tssr71245 7 25412845 to 25412856 11 - TSS region transcription start site region 71245
Tssr71246 7 25412857 to 25412885 28 - TSS region transcription start site region 71246
Tssr71247 7 25412902 to 25412913 11 - TSS region transcription start site region 71247
Tssr2144 7 25412947 to 25412950 3 - TSS region transcription start site region 2144
Tssr2145 7 25412965 to 25412974 9 - TSS region transcription start site region 2145
Tssr2146 7 25412983 to 25412987 4 - TSS region transcription start site region 2146
Tssr2147 7 25413026 to 25413032 6 - TSS region transcription start site region 2147
Gm5587 7 25419153 to 25419826 673 - pseudogene predicted gene 5587
Gm20949 7 25421841 to 25422792 951 - pseudogene predicted gene, 20949
Cpgi18604 7 25422719 to 25423150 431 CpG island CpG island 18604
Tssr2148 7 25427409 to 25427420 11 + TSS region transcription start site region 2148
Tssr65127 7 25431729 to 25431734 5 + TSS region transcription start site region 65127
Tssr65128 7 25433677 to 25433688 11 + TSS region transcription start site region 65128
Gm15495 7 25442155 to 25443463 1308 - pseudogene predicted gene 15495
Tssr65129 7 25452089 to 25452118 29 + TSS region transcription start site region 65129
Ceacam1 7 25461707 to 25477603 15896 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 1
Tssr65130 7 25463447 to 25463470 23 + TSS region transcription start site region 65130
Tssr71248 7 25463482 to 25463517 35 - TSS region transcription start site region 71248
D7Mit23a 7 25463525 to 25463757 232 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 23a
Tssr65131 7 25463652 to 25463666 14 + TSS region transcription start site region 65131
Tssr65132 7 25463676 to 25463698 22 + TSS region transcription start site region 65132
Tssr71249 7 25463700 to 25463718 18 - TSS region transcription start site region 71249
Tssr71250 7 25463719 to 25463729 10 - TSS region transcription start site region 71250
Tssr71251 7 25464265 to 25464268 3 - TSS region transcription start site region 71251
Tssr71252 7 25466345 to 25466356 11 - TSS region transcription start site region 71252
Tssr71253 7 25466357 to 25466383 26 - TSS region transcription start site region 71253
Tssr71254 7 25466399 to 25466422 23 - TSS region transcription start site region 71254
Tssr71255 7 25471822 to 25471828 6 - TSS region transcription start site region 71255
Tssr65133 7 25471878 to 25471891 13 + TSS region transcription start site region 65133
Tssr71256 7 25471920 to 25471971 51 - TSS region transcription start site region 71256
Tssr71257 7 25471973 to 25471997 24 - TSS region transcription start site region 71257
Tssr65134 7 25471980 to 25471987 7 + TSS region transcription start site region 65134
Tssr71258 7 25472020 to 25472023 3 - TSS region transcription start site region 71258
Tssr65135 7 25474747 to 25474773 26 + TSS region transcription start site region 65135
Tssr65136 7 25476385 to 25476402 17 + TSS region transcription start site region 65136
Tssr71259 7 25476406 to 25476426 20 - TSS region transcription start site region 71259
Tssr71260 7 25476483 to 25476500 17 - TSS region transcription start site region 71260
Tssr71261 7 25476552 to 25476563 11 - TSS region transcription start site region 71261
Tssr71262 7 25476566 to 25476590 24 - TSS region transcription start site region 71262
Tssr71263 7 25476642 to 25476654 12 - TSS region transcription start site region 71263
Tssr71264 7 25476696 to 25476701 5 - TSS region transcription start site region 71264
Tssr71265 7 25477582 to 25477594 12 - TSS region transcription start site region 71265
Tssr71266 7 25477597 to 25477602 5 - TSS region transcription start site region 71266
Tssr71267 7 25477607 to 25477634 27 - TSS region transcription start site region 71267
Gm38967 7 25483186 to 25486853 3667 - lncRNA gene predicted gene, 38967
Ceacam2 7 25516042 to 25539857 23815 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 2
Tssr2149 7 25517677 to 25517687 10 - TSS region transcription start site region 2149
D7Mit23b 7 25517826 to 25518042 216 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 23b
D7Dcr2 7 25517906 to 25518003 97 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 2
Tssr71268 7 25537070 to 25537086 16 - TSS region transcription start site region 71268
Tssr71269 7 25539804 to 25539815 11 - TSS region transcription start site region 71269
Tssr71270 7 25539822 to 25539829 7 - TSS region transcription start site region 71270
Tssr71271 7 25539845 to 25539858 13 - TSS region transcription start site region 71271
Tssr71272 7 25539915 to 25539933 18 - TSS region transcription start site region 71272
Tssr71273 7 25539950 to 25539955 5 - TSS region transcription start site region 71273
Gm29918 7 25577074 to 25577798 724 - lincRNA gene predicted gene, 29918
Gm38569 7 25584224 to 25594776 10552 + lincRNA gene predicted gene, 38569
Tssr65137 7 25601285 to 25601294 9 + TSS region transcription start site region 65137
Gm4607 7 25601326 to 25601902 576 + pseudogene predicted gene 4607
Cpgi18605 7 25601375 to 25601546 171 CpG island CpG island 18605
Erich4 7 25614621 to 25615892 1271 - protein coding gene glutamate rich 4
Tssr71274 7 25615807 to 25615814 7 - TSS region transcription start site region 71274
Tssr71275 7 25615835 to 25615859 24 - TSS region transcription start site region 71275
Tssr71276 7 25615874 to 25615886 12 - TSS region transcription start site region 71276
D7Mit113 7 25616709 to 25616885 176 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 113
Gm38969 7 25618668 to 25619524 856 - lncRNA gene predicted gene, 38969
Cpgi18606 7 25619059 to 25619761 702 CpG island CpG island 18606
Tssr65138 7 25619404 to 25619446 42 + TSS region transcription start site region 65138
Dmac2 7 25619414 to 25625550 6136 + protein coding gene distal membrane arm assembly complex 2
Tssr65139 7 25627154 to 25627168 14 + TSS region transcription start site region 65139
Tssr65140 7 25627181 to 25627196 15 + TSS region transcription start site region 65140
Cpgi18607 7 25627335 to 25627540 205 CpG island CpG island 18607
B3gnt8 7 25627588 to 25629492 1904 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
Tssr65141 7 25627604 to 25627652 48 + TSS region transcription start site region 65141
Bckdha 7 25629852 to 25658785 28933 - protein coding gene branched chain ketoacid dehydrogenase E1, alpha polypeptide
Cpgi18608 7 25633163 to 25633384 221 CpG island CpG island 18608
Tssr65142 7 25644897 to 25644900 3 + TSS region transcription start site region 65142
B230201I24Rik 7 25650482 to 25651138 656 unclassified gene RIKEN cDNA B230201I24 gene
Tssr71277 7 25651333 to 25651375 42 - TSS region transcription start site region 71277
Tssr71278 7 25655847 to 25655851 4 - TSS region transcription start site region 71278
Cpgi18609 7 25658629 to 25659485 856 CpG island CpG island 18609
Tssr71279 7 25658726 to 25658761 35 - TSS region transcription start site region 71279
Tssr65143 7 25659148 to 25659157 9 + TSS region transcription start site region 65143
Exosc5 7 25659153 to 25668032 8879 + protein coding gene exosome component 5
Tssr65144 7 25659164 to 25659236 72 + TSS region transcription start site region 65144
Tssr65145 7 25659401 to 25659409 8 + TSS region transcription start site region 65145
Tssr65146 7 25659424 to 25659446 22 + TSS region transcription start site region 65146
Tssr65147 7 25659450 to 25659461 11 + TSS region transcription start site region 65147
Tmem91 7 25669139 to 25675166 6027 - protein coding gene transmembrane protein 91
Tssr65148 7 25670443 to 25670448 5 + TSS region transcription start site region 65148
Cpgi18610 7 25674591 to 25675239 648 CpG island CpG island 18610
Tssr71280 7 25675100 to 25675187 87 - TSS region transcription start site region 71280
D7Mit265 7 25678573 to 25678697 124 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 265
Tssr71281 7 25679061 to 25679108 47 - TSS region transcription start site region 71281
Cpgi18611 7 25680556 to 25681152 596 CpG island CpG island 18611
B9d2 7 25680780 to 25686558 5778 + protein coding gene B9 protein domain 2
Tssr65149 7 25680780 to 25680834 54 + TSS region transcription start site region 65149
Tssr65150 7 25680842 to 25680861 19 + TSS region transcription start site region 65150
Tssr71282 7 25681018 to 25681034 16 - TSS region transcription start site region 71282
Tssr65151 7 25681177 to 25681191 14 + TSS region transcription start site region 65151
Cpgi18612 7 25686113 to 25688296 2183 CpG island CpG island 18612
Tssr65152 7 25686994 to 25687012 18 + TSS region transcription start site region 65152
Tgfb1 7 25687002 to 25705077 18075 + protein coding gene transforming growth factor, beta 1
Skts14 7 25687002 to 25705077 18075 QTL skin tumor susceptibility 14
Tssr65153 7 25687125 to 25687136 11 + TSS region transcription start site region 65153
Tssr71283 7 25687264 to 25687279 15 - TSS region transcription start site region 71283
Tssr65154 7 25687277 to 25687341 64 + TSS region transcription start site region 65154
Tssr65155 7 25687365 to 25687377 12 + TSS region transcription start site region 65155
Tssr65156 7 25687481 to 25687540 59 + TSS region transcription start site region 65156
Tssr71284 7 25687537 to 25687573 36 - TSS region transcription start site region 71284
Tssr65157 7 25687541 to 25687569 28 + TSS region transcription start site region 65157