Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:25114915-25305615

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pou2f2 7 25091114 to 25179993 88879 - protein coding gene POU domain, class 2, transcription factor 2
Tssr71188 7 25116088 to 25116121 33 - TSS region transcription start site region 71188
Tssr71189 7 25121520 to 25121530 10 - TSS region transcription start site region 71189
Tssr71190 7 25132440 to 25132455 15 - TSS region transcription start site region 71190
Tssr71191 7 25132473 to 25132493 20 - TSS region transcription start site region 71191
Cpgi18579 7 25133041 to 25133604 563 CpG island CpG island 18579
Tssr65093 7 25152456 to 25152462 6 + TSS region transcription start site region 65093
D930028M14Rik 7 25152457 to 25156627 4170 + lincRNA gene RIKEN cDNA D930028M14 gene
Tssr65094 7 25155955 to 25155981 26 + TSS region transcription start site region 65094
Tssr2139 7 25178624 to 25178630 6 - TSS region transcription start site region 2139
Cpgi18580 7 25178717 to 25180145 1428 CpG island CpG island 18580
Tssr71192 7 25179773 to 25179786 13 - TSS region transcription start site region 71192
Tssr71193 7 25179857 to 25179896 39 - TSS region transcription start site region 71193
Lrdm1 7 25179993 to 3303532 -21876461 QTL lymphoproliferation (Fas) renal disease modifier 1
Cpgi18581 7 25181140 to 25181321 181 CpG island CpG island 18581
Cpgi18582 7 25181649 to 25182235 586 CpG island CpG island 18582
Dedd2 7 25202838 to 25219873 17035 - protein coding gene death effector domain-containing DNA binding protein 2
Tssr71194 7 25205444 to 25205455 11 - TSS region transcription start site region 71194
Tssr71195 7 25205952 to 25205962 10 - TSS region transcription start site region 71195
Tssr65095 7 25206120 to 25206130 10 + TSS region transcription start site region 65095
Tssr71196 7 25206527 to 25206538 11 - TSS region transcription start site region 71196
Mir7048 7 25217668 to 25217725 57 - miRNA gene microRNA 7048
Cpgi18583 7 25218705 to 25220222 1517 CpG island CpG island 18583
Tssr65096 7 25218914 to 25218924 10 + TSS region transcription start site region 65096
Tssr65097 7 25219340 to 25219378 38 + TSS region transcription start site region 65097
4933430L12Rik 7 25219368 to 25220930 1562 + antisense lncRNA gene RIKEN cDNA 4933430L12 gene
Tssr71197 7 25219823 to 25219880 57 - TSS region transcription start site region 71197
Cpgi18584 7 25221021 to 25221869 848 CpG island CpG island 18584
Tssr65098 7 25221417 to 25221469 52 + TSS region transcription start site region 65098
Zfp526 7 25221425 to 25227507 6082 + protein coding gene zinc finger protein 526
Gsk3a 7 25228258 to 25237851 9593 - protein coding gene glycogen synthase kinase 3 alpha
9130221H12Rik 7 25228723 to 25230264 1541 + antisense lncRNA gene RIKEN cDNA 9130221H12 gene
Tssr71198 7 25229560 to 25229575 15 - TSS region transcription start site region 71198
Tssr71199 7 25230949 to 25230956 7 - TSS region transcription start site region 71199
Cpgi18585 7 25237077 to 25238412 1335 CpG island CpG island 18585
Tssr71200 7 25237719 to 25237730 11 - TSS region transcription start site region 71200
Tssr71201 7 25237740 to 25237828 88 - TSS region transcription start site region 71201
Tssr71202 7 25237849 to 25237856 7 - TSS region transcription start site region 71202
Tssr71203 7 25237866 to 25237877 11 - TSS region transcription start site region 71203
Cpgi18586 7 25239153 to 25239509 356 CpG island CpG island 18586
Erf 7 25242560 to 25250758 8198 - protein coding gene Ets2 repressor factor
Tssr71204 7 25245000 to 25245015 15 - TSS region transcription start site region 71204
Tssr71205 7 25245107 to 25245144 37 - TSS region transcription start site region 71205
Tssr71206 7 25245176 to 25245207 31 - TSS region transcription start site region 71206
Tssr71207 7 25245440 to 25245453 13 - TSS region transcription start site region 71207
Tssr71208 7 25245467 to 25245481 14 - TSS region transcription start site region 71208
Tssr71209 7 25245519 to 25245532 13 - TSS region transcription start site region 71209
Tssr71210 7 25245707 to 25245710 3 - TSS region transcription start site region 71210
Tssr71211 7 25248424 to 25248465 41 - TSS region transcription start site region 71211
Cpgi18587 7 25248910 to 25251222 2312 CpG island CpG island 18587
Tssr71212 7 25250720 to 25250738 18 - TSS region transcription start site region 71212
Tssr71213 7 25250871 to 25250881 10 - TSS region transcription start site region 71213
Cpgi18588 7 25251245 to 25251415 170 CpG island CpG island 18588
Cpgi18589 7 25267178 to 25268616 1438 CpG island CpG island 18589
Tssr71214 7 25267408 to 25267421 13 - TSS region transcription start site region 71214
Tssr65099 7 25267669 to 25267723 54 + TSS region transcription start site region 65099
Cic 7 25267704 to 25294159 26455 + protein coding gene capicua transcriptional repressor
Gm45974 7 25267755 to 25270827 3072 - lncRNA gene predicted gene, 45974
Tssr65100 7 25268394 to 25268420 26 + TSS region transcription start site region 65100
Tssr65101 7 25268440 to 25268454 14 + TSS region transcription start site region 65101
Cpgi18590 7 25278312 to 25279836 1524 CpG island CpG island 18590
Tssr71215 7 25278753 to 25278763 10 - TSS region transcription start site region 71215
Tssr65102 7 25279619 to 25279649 30 + TSS region transcription start site region 65102
Cpgi18591 7 25281571 to 25283408 1837 CpG island CpG island 18591
Tssr65103 7 25282193 to 25282216 23 + TSS region transcription start site region 65103
Tssr65104 7 25282223 to 25282254 31 + TSS region transcription start site region 65104
Tssr65105 7 25282600 to 25282683 83 + TSS region transcription start site region 65105
Tssr65106 7 25282784 to 25282795 11 + TSS region transcription start site region 65106
Tssr65107 7 25284921 to 25284933 12 + TSS region transcription start site region 65107
Tssr65108 7 25289377 to 25289389 12 + TSS region transcription start site region 65108
Tssr65109 7 25289492 to 25289510 18 + TSS region transcription start site region 65109
Tssr65110 7 25291083 to 25291098 15 + TSS region transcription start site region 65110
Tssr65111 7 25291194 to 25291209 15 + TSS region transcription start site region 65111
Pafah1b3 7 25295048 to 25297973 2925 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
Cpgi18592 7 25296903 to 25298104 1201 CpG island CpG island 18592
Tssr71216 7 25297478 to 25297532 54 - TSS region transcription start site region 71216
Tssr71217 7 25297548 to 25297571 23 - TSS region transcription start site region 71217
Tssr71218 7 25297582 to 25297633 51 - TSS region transcription start site region 71218
Tssr71219 7 25297636 to 25297653 17 - TSS region transcription start site region 71219
Tssr71220 7 25297675 to 25297723 48 - TSS region transcription start site region 71220
Tssr71221 7 25297732 to 25297752 20 - TSS region transcription start site region 71221
Tssr71222 7 25297866 to 25297958 92 - TSS region transcription start site region 71222
Tssr71223 7 25297967 to 25298005 38 - TSS region transcription start site region 71223
Cpgi18593 7 25301204 to 25301491 287 CpG island CpG island 18593
Tssr65112 7 25301343 to 25301362 19 + TSS region transcription start site region 65112
Tssr65113 7 25301366 to 25301380 14 + TSS region transcription start site region 65113
Prr19 7 25301411 to 25304132 2721 + protein coding gene proline rich 19
Tssr65114 7 25301416 to 25301421 5 + TSS region transcription start site region 65114
Tssr2140 7 25301468 to 25301471 3 + TSS region transcription start site region 2140
Tssr65115 7 25301476 to 25301524 48 + TSS region transcription start site region 65115
Tssr65116 7 25301528 to 25301540 12 + TSS region transcription start site region 65116