Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:25059656-28469668

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1143 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grik5 7 25009849 to 25072346 62497 - protein coding gene glutamate receptor, ionotropic, kainate 5 (gamma 2)
Tssr71158 7 25068882 to 25068918 36 - TSS region transcription start site region 71158
Cpgi18575 7 25072036 to 25072226 190 CpG island CpG island 18575
Tssr71159 7 25072257 to 25072286 29 - TSS region transcription start site region 71159
Tssr71160 7 25072287 to 25072366 79 - TSS region transcription start site region 71160
Tssr71161 7 25072401 to 25072415 14 - TSS region transcription start site region 71161
Tssr71162 7 25072491 to 25072533 42 - TSS region transcription start site region 71162
Cpgi18576 7 25072597 to 25073199 602 CpG island CpG island 18576
Tssr71163 7 25072686 to 25072797 111 - TSS region transcription start site region 71163
Tssr71164 7 25072803 to 25072815 12 - TSS region transcription start site region 71164
Tssr71165 7 25072924 to 25073024 100 - TSS region transcription start site region 71165
Tssr71166 7 25073072 to 25073125 53 - TSS region transcription start site region 71166
Tssr71167 7 25073130 to 25073164 34 - TSS region transcription start site region 71167
Tssr71168 7 25073223 to 25073242 19 - TSS region transcription start site region 71168
Zfp574 7 25075679 to 25083492 7813 + protein coding gene zinc finger protein 574
Cpgi18577 7 25076803 to 25077824 1021 CpG island CpG island 18577
Tssr71169 7 25076861 to 25076932 71 - TSS region transcription start site region 71169
Tssr65086 7 25077229 to 25077335 106 + TSS region transcription start site region 65086
Tssr65087 7 25077344 to 25077363 19 + TSS region transcription start site region 65087
Tssr65088 7 25077519 to 25077535 16 + TSS region transcription start site region 65088
Tssr65089 7 25077550 to 25077564 14 + TSS region transcription start site region 65089
Tssr71170 7 25087475 to 25087488 13 - TSS region transcription start site region 71170
Tssr65090 7 25088355 to 25088365 10 + TSS region transcription start site region 65090
Tssr65091 7 25088391 to 25088403 12 + TSS region transcription start site region 65091
Tssr65092 7 25088467 to 25088476 9 + TSS region transcription start site region 65092
Tssr71171 7 25088673 to 25088685 12 - TSS region transcription start site region 71171
Tssr71172 7 25089893 to 25089919 26 - TSS region transcription start site region 71172
Tssr71173 7 25090668 to 25090681 13 - TSS region transcription start site region 71173
Tssr71174 7 25090765 to 25090799 34 - TSS region transcription start site region 71174
Tssr71175 7 25090802 to 25090816 14 - TSS region transcription start site region 71175
Pou2f2 7 25091114 to 25179993 88879 - protein coding gene POU domain, class 2, transcription factor 2
Tssr71176 7 25091179 to 25091186 7 - TSS region transcription start site region 71176
Tssr71177 7 25091194 to 25091232 38 - TSS region transcription start site region 71177
Tssr71178 7 25091238 to 25091250 12 - TSS region transcription start site region 71178
Tssr71179 7 25091252 to 25091283 31 - TSS region transcription start site region 71179
Tssr71180 7 25091298 to 25091328 30 - TSS region transcription start site region 71180
Tssr71181 7 25091739 to 25091754 15 - TSS region transcription start site region 71181
Tssr71182 7 25091776 to 25091800 24 - TSS region transcription start site region 71182
Tssr71183 7 25092387 to 25092453 66 - TSS region transcription start site region 71183
Tssr71184 7 25092548 to 25092562 14 - TSS region transcription start site region 71184
Tssr71185 7 25092578 to 25092597 19 - TSS region transcription start site region 71185
Tssr71186 7 25092606 to 25092613 7 - TSS region transcription start site region 71186
Tssr71187 7 25094825 to 25094864 39 - TSS region transcription start site region 71187
Mir6537 7 25097066 to 25097175 109 - miRNA gene microRNA 6537
Cpgi18578 7 25097141 to 25097838 697 CpG island CpG island 18578
Tssr71188 7 25116088 to 25116121 33 - TSS region transcription start site region 71188
Tssr71189 7 25121520 to 25121530 10 - TSS region transcription start site region 71189
Tssr71190 7 25132440 to 25132455 15 - TSS region transcription start site region 71190
Tssr71191 7 25132473 to 25132493 20 - TSS region transcription start site region 71191
Cpgi18579 7 25133041 to 25133604 563 CpG island CpG island 18579
Tssr65093 7 25152456 to 25152462 6 + TSS region transcription start site region 65093
D930028M14Rik 7 25152457 to 25156627 4170 + lincRNA gene RIKEN cDNA D930028M14 gene
Tssr65094 7 25155955 to 25155981 26 + TSS region transcription start site region 65094
Tssr2139 7 25178624 to 25178630 6 - TSS region transcription start site region 2139
Cpgi18580 7 25178717 to 25180145 1428 CpG island CpG island 18580
Tssr71192 7 25179773 to 25179786 13 - TSS region transcription start site region 71192
Tssr71193 7 25179857 to 25179896 39 - TSS region transcription start site region 71193
Lrdm1 7 25179993 to 3303532 -21876461 QTL lymphoproliferation (Fas) renal disease modifier 1
Cpgi18581 7 25181140 to 25181321 181 CpG island CpG island 18581
Cpgi18582 7 25181649 to 25182235 586 CpG island CpG island 18582
Dedd2 7 25202838 to 25219873 17035 - protein coding gene death effector domain-containing DNA binding protein 2
Tssr71194 7 25205444 to 25205455 11 - TSS region transcription start site region 71194
Tssr71195 7 25205952 to 25205962 10 - TSS region transcription start site region 71195
Tssr65095 7 25206120 to 25206130 10 + TSS region transcription start site region 65095
Tssr71196 7 25206527 to 25206538 11 - TSS region transcription start site region 71196
Mir7048 7 25217668 to 25217725 57 - miRNA gene microRNA 7048
Cpgi18583 7 25218705 to 25220222 1517 CpG island CpG island 18583
Tssr65096 7 25218914 to 25218924 10 + TSS region transcription start site region 65096
Tssr65097 7 25219340 to 25219378 38 + TSS region transcription start site region 65097
4933430L12Rik 7 25219368 to 25220930 1562 + antisense lncRNA gene RIKEN cDNA 4933430L12 gene
Tssr71197 7 25219823 to 25219880 57 - TSS region transcription start site region 71197
Cpgi18584 7 25221021 to 25221869 848 CpG island CpG island 18584
Tssr65098 7 25221417 to 25221469 52 + TSS region transcription start site region 65098
Zfp526 7 25221425 to 25227507 6082 + protein coding gene zinc finger protein 526
Gsk3a 7 25228258 to 25237851 9593 - protein coding gene glycogen synthase kinase 3 alpha
9130221H12Rik 7 25228723 to 25230264 1541 + antisense lncRNA gene RIKEN cDNA 9130221H12 gene
Tssr71198 7 25229560 to 25229575 15 - TSS region transcription start site region 71198
Tssr71199 7 25230949 to 25230956 7 - TSS region transcription start site region 71199
Cpgi18585 7 25237077 to 25238412 1335 CpG island CpG island 18585
Tssr71200 7 25237719 to 25237730 11 - TSS region transcription start site region 71200
Tssr71201 7 25237740 to 25237828 88 - TSS region transcription start site region 71201
Tssr71202 7 25237849 to 25237856 7 - TSS region transcription start site region 71202
Tssr71203 7 25237866 to 25237877 11 - TSS region transcription start site region 71203
Cpgi18586 7 25239153 to 25239509 356 CpG island CpG island 18586
Erf 7 25242560 to 25250758 8198 - protein coding gene Ets2 repressor factor
Tssr71204 7 25245000 to 25245015 15 - TSS region transcription start site region 71204
Tssr71205 7 25245107 to 25245144 37 - TSS region transcription start site region 71205
Tssr71206 7 25245176 to 25245207 31 - TSS region transcription start site region 71206
Tssr71207 7 25245440 to 25245453 13 - TSS region transcription start site region 71207
Tssr71208 7 25245467 to 25245481 14 - TSS region transcription start site region 71208
Tssr71209 7 25245519 to 25245532 13 - TSS region transcription start site region 71209
Tssr71210 7 25245707 to 25245710 3 - TSS region transcription start site region 71210
Tssr71211 7 25248424 to 25248465 41 - TSS region transcription start site region 71211
Cpgi18587 7 25248910 to 25251222 2312 CpG island CpG island 18587
Tssr71212 7 25250720 to 25250738 18 - TSS region transcription start site region 71212
Tssr71213 7 25250871 to 25250881 10 - TSS region transcription start site region 71213
Cpgi18588 7 25251245 to 25251415 170 CpG island CpG island 18588
Cpgi18589 7 25267178 to 25268616 1438 CpG island CpG island 18589
Tssr71214 7 25267408 to 25267421 13 - TSS region transcription start site region 71214
Tssr65099 7 25267669 to 25267723 54 + TSS region transcription start site region 65099
Cic 7 25267704 to 25294159 26455 + protein coding gene capicua transcriptional repressor
Gm45974 7 25267755 to 25270827 3072 - lncRNA gene predicted gene, 45974
Tssr65100 7 25268394 to 25268420 26 + TSS region transcription start site region 65100
Tssr65101 7 25268440 to 25268454 14 + TSS region transcription start site region 65101
Cpgi18590 7 25278312 to 25279836 1524 CpG island CpG island 18590
Tssr71215 7 25278753 to 25278763 10 - TSS region transcription start site region 71215
Tssr65102 7 25279619 to 25279649 30 + TSS region transcription start site region 65102
Cpgi18591 7 25281571 to 25283408 1837 CpG island CpG island 18591
Tssr65103 7 25282193 to 25282216 23 + TSS region transcription start site region 65103
Tssr65104 7 25282223 to 25282254 31 + TSS region transcription start site region 65104
Tssr65105 7 25282600 to 25282683 83 + TSS region transcription start site region 65105
Tssr65106 7 25282784 to 25282795 11 + TSS region transcription start site region 65106
Tssr65107 7 25284921 to 25284933 12 + TSS region transcription start site region 65107
Tssr65108 7 25289377 to 25289389 12 + TSS region transcription start site region 65108
Tssr65109 7 25289492 to 25289510 18 + TSS region transcription start site region 65109
Tssr65110 7 25291083 to 25291098 15 + TSS region transcription start site region 65110
Tssr65111 7 25291194 to 25291209 15 + TSS region transcription start site region 65111
Pafah1b3 7 25295048 to 25297973 2925 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
Cpgi18592 7 25296903 to 25298104 1201 CpG island CpG island 18592
Tssr71216 7 25297478 to 25297532 54 - TSS region transcription start site region 71216
Tssr71217 7 25297548 to 25297571 23 - TSS region transcription start site region 71217
Tssr71218 7 25297582 to 25297633 51 - TSS region transcription start site region 71218
Tssr71219 7 25297636 to 25297653 17 - TSS region transcription start site region 71219
Tssr71220 7 25297675 to 25297723 48 - TSS region transcription start site region 71220
Tssr71221 7 25297732 to 25297752 20 - TSS region transcription start site region 71221
Tssr71222 7 25297866 to 25297958 92 - TSS region transcription start site region 71222
Tssr71223 7 25297967 to 25298005 38 - TSS region transcription start site region 71223
Cpgi18593 7 25301204 to 25301491 287 CpG island CpG island 18593
Tssr65112 7 25301343 to 25301362 19 + TSS region transcription start site region 65112
Tssr65113 7 25301366 to 25301380 14 + TSS region transcription start site region 65113
Prr19 7 25301411 to 25304132 2721 + protein coding gene proline rich 19
Tssr65114 7 25301416 to 25301421 5 + TSS region transcription start site region 65114
Tssr2140 7 25301468 to 25301471 3 + TSS region transcription start site region 2140
Tssr65115 7 25301476 to 25301524 48 + TSS region transcription start site region 65115
Tssr65116 7 25301528 to 25301540 12 + TSS region transcription start site region 65116
Cpgi18594 7 25305864 to 25306641 777 CpG island CpG island 18594
Tssr2141 7 25305935 to 25305960 25 + TSS region transcription start site region 2141
Tssr65117 7 25306085 to 25306157 72 + TSS region transcription start site region 65117
Tmem145 7 25306106 to 25316195 10089 + protein coding gene transmembrane protein 145
Tssr65118 7 25306220 to 25306233 13 + TSS region transcription start site region 65118
Cpgi18595 7 25314607 to 25316092 1485 CpG island CpG island 18595
Cpgi18596 7 25316671 to 25317893 1222 CpG island CpG island 18596
Tssr65119 7 25316757 to 25316903 146 + TSS region transcription start site region 65119
Tssr65120 7 25316917 to 25316968 51 + TSS region transcription start site region 65120
Tssr65121 7 25316973 to 25316992 19 + TSS region transcription start site region 65121
Tssr65122 7 25317067 to 25317131 64 + TSS region transcription start site region 65122
Megf8 7 25317164 to 25365917 48753 + protein coding gene multiple EGF-like-domains 8
Cpgi18597 7 25363187 to 25363348 161 CpG island CpG island 18597
Cnfn 7 25367620 to 25369724 2104 - protein coding gene cornifelin
Tssr71224 7 25367650 to 25367670 20 - TSS region transcription start site region 71224
Tssr71225 7 25367675 to 25367684 9 - TSS region transcription start site region 71225
Tssr71226 7 25367692 to 25367703 11 - TSS region transcription start site region 71226
Cpgi18598 7 25367806 to 25368555 749 CpG island CpG island 18598
Tssr71227 7 25368081 to 25368096 15 - TSS region transcription start site region 71227
Tssr71228 7 25369048 to 25369115 67 - TSS region transcription start site region 71228
Tssr71229 7 25369712 to 25369730 18 - TSS region transcription start site region 71229
Cpgi18599 7 25376697 to 25376863 166 CpG island CpG island 18599
4732471J01Rik 7 25376819 to 25566417 189598 + antisense lncRNA gene RIKEN cDNA 4732471J01 gene
Lipe 7 25379527 to 25398486 18959 - protein coding gene lipase, hormone sensitive
Cpgi18600 7 25379743 to 25380237 494 CpG island CpG island 18600
Tssr71230 7 25384951 to 25384958 7 - TSS region transcription start site region 71230
Tssr71231 7 25384961 to 25384972 11 - TSS region transcription start site region 71231
Tssr71232 7 25388399 to 25388424 25 - TSS region transcription start site region 71232
Gm38968 7 25388635 to 25389558 923 + lncRNA gene predicted gene, 38968
Tssr71233 7 25388971 to 25388984 13 - TSS region transcription start site region 71233
Tssr71234 7 25388986 to 25389002 16 - TSS region transcription start site region 71234
Tssr71235 7 25389012 to 25389030 18 - TSS region transcription start site region 71235
Tssr71236 7 25390098 to 25390124 26 - TSS region transcription start site region 71236
Tssr2142 7 25390125 to 25390128 3 - TSS region transcription start site region 2142
Tssr71237 7 25390128 to 25390131 3 - TSS region transcription start site region 71237
Tssr65123 7 25392270 to 25392279 9 + TSS region transcription start site region 65123
Tssr65124 7 25394287 to 25394307 20 + TSS region transcription start site region 65124
Cpgi18601 7 25395253 to 25395805 552 CpG island CpG island 18601
Tssr71238 7 25395533 to 25395538 5 - TSS region transcription start site region 71238
Tssr71239 7 25395579 to 25395587 8 - TSS region transcription start site region 71239
Tssr71240 7 25395610 to 25395695 85 - TSS region transcription start site region 71240
Cpgi18602 7 25395983 to 25396467 484 CpG island CpG island 18602
Tssr65125 7 25396177 to 25396193 16 + TSS region transcription start site region 65125
Tssr65126 7 25396446 to 25396485 39 + TSS region transcription start site region 65126
Cpgi18603 7 25396742 to 25396915 173 CpG island CpG island 18603
Tssr71241 7 25398697 to 25398719 22 - TSS region transcription start site region 71241
Cxcl17 7 25400053 to 25412886 12833 - protein coding gene chemokine (C-X-C motif) ligand 17
Tssr71242 7 25400261 to 25400298 37 - TSS region transcription start site region 71242
Tssr2143 7 25412797 to 25412802 5 - TSS region transcription start site region 2143
Tssr71243 7 25412807 to 25412816 9 - TSS region transcription start site region 71243
Tssr71244 7 25412832 to 25412841 9 - TSS region transcription start site region 71244
Tssr71245 7 25412845 to 25412856 11 - TSS region transcription start site region 71245
Tssr71246 7 25412857 to 25412885 28 - TSS region transcription start site region 71246
Tssr71247 7 25412902 to 25412913 11 - TSS region transcription start site region 71247
Tssr2144 7 25412947 to 25412950 3 - TSS region transcription start site region 2144
Tssr2145 7 25412965 to 25412974 9 - TSS region transcription start site region 2145
Tssr2146 7 25412983 to 25412987 4 - TSS region transcription start site region 2146
Tssr2147 7 25413026 to 25413032 6 - TSS region transcription start site region 2147
Gm5587 7 25419153 to 25419826 673 - pseudogene predicted gene 5587
Gm20949 7 25421841 to 25422792 951 - pseudogene predicted gene, 20949
Cpgi18604 7 25422719 to 25423150 431 CpG island CpG island 18604
Tssr2148 7 25427409 to 25427420 11 + TSS region transcription start site region 2148
Tssr65127 7 25431729 to 25431734 5 + TSS region transcription start site region 65127
Tssr65128 7 25433677 to 25433688 11 + TSS region transcription start site region 65128
Gm15495 7 25442155 to 25443463 1308 - pseudogene predicted gene 15495