Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:24912344-25242363

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef1 7 24902917 to 24926594 23677 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 1
Cpgi18563 7 24912630 to 24912789 159 CpG island CpG island 18563
Tssr65077 7 24917915 to 24917928 13 + TSS region transcription start site region 65077
Tssr65078 7 24918639 to 24918648 9 + TSS region transcription start site region 65078
Tssr65079 7 24918788 to 24918799 11 + TSS region transcription start site region 65079
Tssr65080 7 24918831 to 24918846 15 + TSS region transcription start site region 65080
Gm4881 7 24927445 to 24944494 17049 - protein coding gene predicted gene 4881
Cpgi18564 7 24931689 to 24931914 225 CpG island CpG island 18564
Cpgi18565 7 24933634 to 24933816 182 CpG island CpG island 18565
Cpgi18566 7 24942822 to 24943448 626 CpG island CpG island 18566
Cpgi18567 7 24943944 to 24945450 1506 CpG island CpG island 18567
Cpgi18568 7 24948749 to 24949097 348 CpG island CpG island 18568
Gm36809 7 24953524 to 24954476 952 - lncRNA gene predicted gene, 36809
Cpgi18569 7 24954002 to 24955656 1654 CpG island CpG island 18569
Tssr71114 7 24954408 to 24954443 35 - TSS region transcription start site region 71114
Tssr71115 7 24954446 to 24954494 48 - TSS region transcription start site region 71115
Tssr71116 7 24954661 to 24954674 13 - TSS region transcription start site region 71116
Gm44970 7 24954917 to 24958241 3324 + lincRNA gene predicted gene 44970
Rabac1 7 24969750 to 24972728 2978 - protein coding gene Rab acceptor 1 (prenylated)
Mir7046 7 24970010 to 24970075 65 - miRNA gene microRNA 7046
Tssr71117 7 24971989 to 24972004 15 - TSS region transcription start site region 71117
Cpgi18570 7 24971992 to 24972961 969 CpG island CpG island 18570
Tssr71118 7 24972031 to 24972041 10 - TSS region transcription start site region 71118
Tssr71119 7 24972580 to 24972616 36 - TSS region transcription start site region 71119
Tssr71120 7 24972630 to 24972644 14 - TSS region transcription start site region 71120
Tssr71121 7 24972658 to 24972684 26 - TSS region transcription start site region 71121
Tssr71122 7 24972685 to 24972694 9 - TSS region transcription start site region 71122
Atp1a3 7 24978167 to 25005937 27770 - protein coding gene ATPase, Na+/K+ transporting, alpha 3 polypeptide
Tssr71123 7 24978301 to 24978310 9 - TSS region transcription start site region 71123
Tssr71124 7 24978315 to 24978342 27 - TSS region transcription start site region 71124
Tssr65081 7 24978345 to 24978359 14 + TSS region transcription start site region 65081
Tssr71125 7 24978347 to 24978364 17 - TSS region transcription start site region 71125
Tssr71126 7 24978390 to 24978400 10 - TSS region transcription start site region 71126
Tssr71127 7 24978409 to 24978419 10 - TSS region transcription start site region 71127
Tssr71128 7 24978433 to 24978436 3 - TSS region transcription start site region 71128
Tssr71129 7 24978443 to 24978467 24 - TSS region transcription start site region 71129
Tssr71130 7 24978512 to 24978521 9 - TSS region transcription start site region 71130
Tssr71131 7 24978543 to 24978554 11 - TSS region transcription start site region 71131
Tssr71132 7 24978555 to 24978563 8 - TSS region transcription start site region 71132
Tssr71133 7 24980104 to 24980127 23 - TSS region transcription start site region 71133
Tssr71134 7 24980588 to 24980622 34 - TSS region transcription start site region 71134
Tssr71135 7 24981610 to 24981622 12 - TSS region transcription start site region 71135
Tssr65082 7 24981736 to 24981752 16 + TSS region transcription start site region 65082
Tssr71136 7 24987514 to 24987537 23 - TSS region transcription start site region 71136
Mir7047 7 24987604 to 24987667 63 - miRNA gene microRNA 7047
Tssr71137 7 24988032 to 24988120 88 - TSS region transcription start site region 71137
Tssr71138 7 24988136 to 24988153 17 - TSS region transcription start site region 71138
Tssr71139 7 24988305 to 24988315 10 - TSS region transcription start site region 71139
Tssr71140 7 24989840 to 24989850 10 - TSS region transcription start site region 71140
Tssr71141 7 24989952 to 24989970 18 - TSS region transcription start site region 71141
Tssr65083 7 24990487 to 24990507 20 + TSS region transcription start site region 65083
Tssr65084 7 24990514 to 24990531 17 + TSS region transcription start site region 65084
Cpgi18571 7 24994180 to 24994917 737 CpG island CpG island 18571
Tssr71142 7 24994246 to 24994266 20 - TSS region transcription start site region 71142
Tssr71143 7 24997222 to 24997233 11 - TSS region transcription start site region 71143
Tssr71144 7 24997237 to 24997251 14 - TSS region transcription start site region 71144
Tssr71145 7 24997561 to 24997569 8 - TSS region transcription start site region 71145
Tssr71146 7 24997572 to 24997636 64 - TSS region transcription start site region 71146
Tssr65085 7 24998683 to 24998737 54 + TSS region transcription start site region 65085
Tssr71147 7 24998698 to 24998734 36 - TSS region transcription start site region 71147
Tssr71148 7 24998995 to 24999007 12 - TSS region transcription start site region 71148
Tssr71149 7 24999012 to 24999019 7 - TSS region transcription start site region 71149
Tssr71150 7 25000596 to 25000607 11 - TSS region transcription start site region 71150
Tssr71151 7 25000634 to 25000647 13 - TSS region transcription start site region 71151
Tssr71152 7 25000689 to 25000699 10 - TSS region transcription start site region 71152
Tssr71153 7 25000713 to 25000746 33 - TSS region transcription start site region 71153
Tssr71154 7 25002823 to 25002837 14 - TSS region transcription start site region 71154
Cpgi18572 7 25005293 to 25006210 917 CpG island CpG island 18572
Tssr71155 7 25005876 to 25005887 11 - TSS region transcription start site region 71155
Tssr71156 7 25005898 to 25005923 25 - TSS region transcription start site region 71156
Cpgi18573 7 25008754 to 25009047 293 CpG island CpG island 18573
Cpgi18574 7 25009724 to 25011066 1342 CpG island CpG island 18574
Grik5 7 25009849 to 25072346 62497 - protein coding gene glutamate receptor, ionotropic, kainate 5 (gamma 2)
Tssr71157 7 25030011 to 25030012 1 - TSS region transcription start site region 71157
D7Mit192 7 25052371 to 25052511 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 192
Tssr71158 7 25068882 to 25068918 36 - TSS region transcription start site region 71158
Cpgi18575 7 25072036 to 25072226 190 CpG island CpG island 18575
Tssr71159 7 25072257 to 25072286 29 - TSS region transcription start site region 71159
Tssr71160 7 25072287 to 25072366 79 - TSS region transcription start site region 71160
Tssr71161 7 25072401 to 25072415 14 - TSS region transcription start site region 71161
Tssr71162 7 25072491 to 25072533 42 - TSS region transcription start site region 71162
Cpgi18576 7 25072597 to 25073199 602 CpG island CpG island 18576
Tssr71163 7 25072686 to 25072797 111 - TSS region transcription start site region 71163
Tssr71164 7 25072803 to 25072815 12 - TSS region transcription start site region 71164
Tssr71165 7 25072924 to 25073024 100 - TSS region transcription start site region 71165
Tssr71166 7 25073072 to 25073125 53 - TSS region transcription start site region 71166
Tssr71167 7 25073130 to 25073164 34 - TSS region transcription start site region 71167
Tssr71168 7 25073223 to 25073242 19 - TSS region transcription start site region 71168
Zfp574 7 25075679 to 25083492 7813 + protein coding gene zinc finger protein 574
Cpgi18577 7 25076803 to 25077824 1021 CpG island CpG island 18577
Tssr71169 7 25076861 to 25076932 71 - TSS region transcription start site region 71169
Tssr65086 7 25077229 to 25077335 106 + TSS region transcription start site region 65086
Tssr65087 7 25077344 to 25077363 19 + TSS region transcription start site region 65087
Tssr65088 7 25077519 to 25077535 16 + TSS region transcription start site region 65088
Tssr65089 7 25077550 to 25077564 14 + TSS region transcription start site region 65089
Tssr71170 7 25087475 to 25087488 13 - TSS region transcription start site region 71170
Tssr65090 7 25088355 to 25088365 10 + TSS region transcription start site region 65090
Tssr65091 7 25088391 to 25088403 12 + TSS region transcription start site region 65091
Tssr65092 7 25088467 to 25088476 9 + TSS region transcription start site region 65092
Tssr71171 7 25088673 to 25088685 12 - TSS region transcription start site region 71171
Tssr71172 7 25089893 to 25089919 26 - TSS region transcription start site region 71172
Tssr71173 7 25090668 to 25090681 13 - TSS region transcription start site region 71173
Tssr71174 7 25090765 to 25090799 34 - TSS region transcription start site region 71174
Tssr71175 7 25090802 to 25090816 14 - TSS region transcription start site region 71175
Pou2f2 7 25091114 to 25179993 88879 - protein coding gene POU domain, class 2, transcription factor 2
Tssr71176 7 25091179 to 25091186 7 - TSS region transcription start site region 71176
Tssr71177 7 25091194 to 25091232 38 - TSS region transcription start site region 71177
Tssr71178 7 25091238 to 25091250 12 - TSS region transcription start site region 71178
Tssr71179 7 25091252 to 25091283 31 - TSS region transcription start site region 71179
Tssr71180 7 25091298 to 25091328 30 - TSS region transcription start site region 71180
Tssr71181 7 25091739 to 25091754 15 - TSS region transcription start site region 71181
Tssr71182 7 25091776 to 25091800 24 - TSS region transcription start site region 71182
Tssr71183 7 25092387 to 25092453 66 - TSS region transcription start site region 71183
Tssr71184 7 25092548 to 25092562 14 - TSS region transcription start site region 71184
Tssr71185 7 25092578 to 25092597 19 - TSS region transcription start site region 71185
Tssr71186 7 25092606 to 25092613 7 - TSS region transcription start site region 71186
Tssr71187 7 25094825 to 25094864 39 - TSS region transcription start site region 71187
Mir6537 7 25097066 to 25097175 109 - miRNA gene microRNA 6537
Cpgi18578 7 25097141 to 25097838 697 CpG island CpG island 18578
Tssr71188 7 25116088 to 25116121 33 - TSS region transcription start site region 71188
Tssr71189 7 25121520 to 25121530 10 - TSS region transcription start site region 71189
Tssr71190 7 25132440 to 25132455 15 - TSS region transcription start site region 71190
Tssr71191 7 25132473 to 25132493 20 - TSS region transcription start site region 71191
Cpgi18579 7 25133041 to 25133604 563 CpG island CpG island 18579
Tssr65093 7 25152456 to 25152462 6 + TSS region transcription start site region 65093
D930028M14Rik 7 25152457 to 25156627 4170 + lincRNA gene RIKEN cDNA D930028M14 gene
Tssr65094 7 25155955 to 25155981 26 + TSS region transcription start site region 65094
Tssr2139 7 25178624 to 25178630 6 - TSS region transcription start site region 2139
Cpgi18580 7 25178717 to 25180145 1428 CpG island CpG island 18580
Tssr71192 7 25179773 to 25179786 13 - TSS region transcription start site region 71192
Tssr71193 7 25179857 to 25179896 39 - TSS region transcription start site region 71193
Lrdm1 7 25179993 to 3303532 -21876461 QTL lymphoproliferation (Fas) renal disease modifier 1
Cpgi18581 7 25181140 to 25181321 181 CpG island CpG island 18581
Cpgi18582 7 25181649 to 25182235 586 CpG island CpG island 18582
Dedd2 7 25202838 to 25219873 17035 - protein coding gene death effector domain-containing DNA binding protein 2
Tssr71194 7 25205444 to 25205455 11 - TSS region transcription start site region 71194
Tssr71195 7 25205952 to 25205962 10 - TSS region transcription start site region 71195
Tssr65095 7 25206120 to 25206130 10 + TSS region transcription start site region 65095
Tssr71196 7 25206527 to 25206538 11 - TSS region transcription start site region 71196
Mir7048 7 25217668 to 25217725 57 - miRNA gene microRNA 7048
Cpgi18583 7 25218705 to 25220222 1517 CpG island CpG island 18583
Tssr65096 7 25218914 to 25218924 10 + TSS region transcription start site region 65096
Tssr65097 7 25219340 to 25219378 38 + TSS region transcription start site region 65097
4933430L12Rik 7 25219368 to 25220930 1562 + antisense lncRNA gene RIKEN cDNA 4933430L12 gene
Tssr71197 7 25219823 to 25219880 57 - TSS region transcription start site region 71197
Cpgi18584 7 25221021 to 25221869 848 CpG island CpG island 18584
Tssr65098 7 25221417 to 25221469 52 + TSS region transcription start site region 65098
Zfp526 7 25221425 to 25227507 6082 + protein coding gene zinc finger protein 526
Gsk3a 7 25228258 to 25237851 9593 - protein coding gene glycogen synthase kinase 3 alpha
9130221H12Rik 7 25228723 to 25230264 1541 + antisense lncRNA gene RIKEN cDNA 9130221H12 gene
Tssr71198 7 25229560 to 25229575 15 - TSS region transcription start site region 71198
Tssr71199 7 25230949 to 25230956 7 - TSS region transcription start site region 71199
Cpgi18585 7 25237077 to 25238412 1335 CpG island CpG island 18585
Tssr71200 7 25237719 to 25237730 11 - TSS region transcription start site region 71200
Tssr71201 7 25237740 to 25237828 88 - TSS region transcription start site region 71201
Tssr71202 7 25237849 to 25237856 7 - TSS region transcription start site region 71202
Tssr71203 7 25237866 to 25237877 11 - TSS region transcription start site region 71203
Cpgi18586 7 25239153 to 25239509 356 CpG island CpG island 18586