Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:24543944-25345450

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367 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pinlyp 7 24541658 to 24546118 4460 - protein coding gene phospholipase A2 inhibitor and LY6/PLAUR domain containing
Tssr71091 7 24545994 to 24546012 18 - TSS region transcription start site region 71091
Cpgi18546 7 24546481 to 24547676 1195 CpG island CpG island 18546
Xrcc1 7 24546704 to 24573438 26734 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 1
Tssr65006 7 24547167 to 24547244 77 + TSS region transcription start site region 65006
Tssr65007 7 24547252 to 24547279 27 + TSS region transcription start site region 65007
Tssr65008 7 24547479 to 24547490 11 + TSS region transcription start site region 65008
Tssr65009 7 24547495 to 24547504 9 + TSS region transcription start site region 65009
Zfp575 7 24583838 to 24587641 3803 - protein coding gene zinc finger protein 575
Cpgi18547 7 24585107 to 24585270 163 CpG island CpG island 18547
Cpgi18548 7 24585472 to 24586437 965 CpG island CpG island 18548
Cpgi18549 7 24587340 to 24587787 447 CpG island CpG island 18549
Ethe1 7 24587543 to 24608925 21382 + protein coding gene ethylmalonic encephalopathy 1
Tssr71092 7 24587612 to 24587665 53 - TSS region transcription start site region 71092
Tssr71093 7 24589768 to 24589775 7 - TSS region transcription start site region 71093
Cpgi18550 7 24593640 to 24594189 549 CpG island CpG island 18550
Tssr2134 7 24593857 to 24593858 1 + TSS region transcription start site region 2134
Tssr65010 7 24593860 to 24593878 18 + TSS region transcription start site region 65010
Tssr65011 7 24593900 to 24593914 14 + TSS region transcription start site region 65011
Cpgi18551 7 24594886 to 24595108 222 CpG island CpG island 18551
Tssr65012 7 24608314 to 24608334 20 + TSS region transcription start site region 65012
Tssr65013 7 24608338 to 24608369 31 + TSS region transcription start site region 65013
Tssr65014 7 24608379 to 24608393 14 + TSS region transcription start site region 65014
Cpgi18552 7 24610595 to 24611622 1027 CpG island CpG island 18552
Tssr65015 7 24610748 to 24610776 28 + TSS region transcription start site region 65015
Phldb3 7 24610763 to 24629297 18534 + protein coding gene pleckstrin homology like domain, family B, member 3
Tssr71094 7 24611188 to 24611206 18 - TSS region transcription start site region 71094
Tssr65016 7 24611314 to 24611349 35 + TSS region transcription start site region 65016
Cpgi18553 7 24612421 to 24613068 647 CpG island CpG island 18553
D7Mit180 7 24627166 to 24627280 114 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 180
Gm26550 7 24631145 to 24637916 6771 - antisense lncRNA gene predicted gene, 26550
Tssr65017 7 24636479 to 24636520 41 + TSS region transcription start site region 65017
Tssr65018 7 24636544 to 24636564 20 + TSS region transcription start site region 65018
Tssr65019 7 24636566 to 24636589 23 + TSS region transcription start site region 65019
Lypd3 7 24636570 to 24641118 4548 + protein coding gene Ly6/Plaur domain containing 3
Tssr2135 7 24636613 to 24636614 1 + TSS region transcription start site region 2135
Cpgi18554 7 24637071 to 24637385 314 CpG island CpG island 18554
Cpgi18555 7 24638337 to 24639142 805 CpG island CpG island 18555
Tssr65020 7 24638776 to 24638783 7 + TSS region transcription start site region 65020
Tssr65021 7 24638784 to 24638797 13 + TSS region transcription start site region 65021
Cpgi18556 7 24640029 to 24640298 269 CpG island CpG island 18556
Tssr65022 7 24640199 to 24640217 18 + TSS region transcription start site region 65022
Tssr65023 7 24655780 to 24655786 6 + TSS region transcription start site region 65023
Gm4598 7 24661294 to 24663109 1815 + lincRNA gene predicted gene 4598
2200007N16Rik 7 24666733 to 24666970 237 + unclassified gene RIKEN cDNA 2200007N16 gene
Tex101 7 24668012 to 24672050 4038 - protein coding gene testis expressed gene 101
Cpgi18557 7 24671973 to 24672284 311 CpG island CpG island 18557
Tssr71095 7 24672032 to 24672048 16 - TSS region transcription start site region 71095
Tssr71096 7 24672054 to 24672066 12 - TSS region transcription start site region 71096
Tssr71097 7 24672068 to 24672077 9 - TSS region transcription start site region 71097
Tssr71098 7 24676670 to 24676679 9 - TSS region transcription start site region 71098
Gm44971 7 24684306 to 24684642 336 + pseudogene predicted gene 44971
Gm1096 7 24687908 to 24695219 7311 + protein coding gene predicted gene 1096
Gm36776 7 24706415 to 24706617 202 - pseudogene predicted gene, 36776
Cpgi18558 7 24708958 to 24709154 196 CpG island CpG island 18558
Tssr2136 7 24709222 to 24709228 6 + TSS region transcription start site region 2136
Tssr65024 7 24709229 to 24709234 5 + TSS region transcription start site region 65024
Tssr65025 7 24709237 to 24709271 34 + TSS region transcription start site region 65025
Lypd10 7 24709242 to 24714535 5293 + protein coding gene Ly6/PLAUR domain containing 10
Tssr2137 7 24709287 to 24709290 3 + TSS region transcription start site region 2137
Lypd11 7 24715023 to 24726908 11885 - protein coding gene Ly6/PLAUR domain containing 11
Gm44972 7 24729720 to 24730125 405 - pseudogene predicted gene 44972
D7Mit264 7 24743107 to 24743207 100 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 264
Cd177 7 24743983 to 24760311 16328 - protein coding gene CD177 antigen
Tssr71099 7 24750390 to 24750427 37 - TSS region transcription start site region 71099
Tssr71100 7 24750831 to 24750842 11 - TSS region transcription start site region 71100
Tssr71101 7 24752052 to 24752063 11 - TSS region transcription start site region 71101
Tssr71102 7 24760311 to 24760327 16 - TSS region transcription start site region 71102
Tssr71103 7 24765930 to 24765938 8 - TSS region transcription start site region 71103
Tssr71104 7 24765966 to 24765989 23 - TSS region transcription start site region 71104
Tssr2138 7 24765999 to 24766002 3 - TSS region transcription start site region 2138
Tssr71105 7 24766015 to 24766020 5 - TSS region transcription start site region 71105
Tssr65026 7 24771673 to 24771675 2 + TSS region transcription start site region 65026
Tssr65027 7 24777172 to 24777247 75 + TSS region transcription start site region 65027
Ceacam10 7 24777206 to 24784657 7451 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 10
Tssr65028 7 24778134 to 24778138 4 + TSS region transcription start site region 65028
Tssr65029 7 24778144 to 24778152 8 + TSS region transcription start site region 65029
Tssr65030 7 24778168 to 24778186 18 + TSS region transcription start site region 65030
Tssr65031 7 24778217 to 24778218 1 + TSS region transcription start site region 65031
Tssr65032 7 24778333 to 24778341 8 + TSS region transcription start site region 65032
Tssr65033 7 24778411 to 24778421 10 + TSS region transcription start site region 65033
Tssr65034 7 24780691 to 24780726 35 + TSS region transcription start site region 65034
Tssr65035 7 24780865 to 24780871 6 + TSS region transcription start site region 65035
Tssr65036 7 24780881 to 24780898 17 + TSS region transcription start site region 65036
Tssr71106 7 24780901 to 24780931 30 - TSS region transcription start site region 71106
Tssr65037 7 24780945 to 24780954 9 + TSS region transcription start site region 65037
Tssr65038 7 24784487 to 24784489 2 + TSS region transcription start site region 65038
Tssr65039 7 24784581 to 24784584 3 + TSS region transcription start site region 65039
Tssr65040 7 24784599 to 24784605 6 + TSS region transcription start site region 65040
Tssr65041 7 24784626 to 24784629 3 + TSS region transcription start site region 65041
Tssr71107 7 24806208 to 24806212 4 - TSS region transcription start site region 71107
Tssr65042 7 24818753 to 24818764 11 + TSS region transcription start site region 65042
Tssr65043 7 24818766 to 24818773 7 + TSS region transcription start site region 65043
Tssr65044 7 24818789 to 24818795 6 + TSS region transcription start site region 65044
Gm5893 7 24818795 to 24840275 21480 + unclassified non-coding RNA gene predicted gene 5893
Tssr65045 7 24824749 to 24824776 27 + TSS region transcription start site region 65045
Gt(pU21)105Imeg 7 24840446 to 24840516 70 unclassified gene gene trap 105, Institute of Molecular Embryology and Genetics
Tssr71108 7 24851083 to 24851094 11 - TSS region transcription start site region 71108
Gm38965 7 24853795 to 24854785 990 + lncRNA gene predicted gene, 38965
Tssr65046 7 24853898 to 24853924 26 + TSS region transcription start site region 65046
Gm18207 7 24860946 to 24861471 525 + pseudogene predicted gene, 18207
Tssr65047 7 24862193 to 24862209 16 + TSS region transcription start site region 65047
Gm9844 7 24862203 to 24862678 475 + protein coding gene predicted pseudogene 9844
Tssr65048 7 24862222 to 24862236 14 + TSS region transcription start site region 65048
Tssr65049 7 24862428 to 24862437 9 + TSS region transcription start site region 65049
Lypd4 7 24864619 to 24869780 5161 - protein coding gene Ly6/Plaur domain containing 4
Cpgi18559 7 24869620 to 24870513 893 CpG island CpG island 18559
Tssr71109 7 24869692 to 24869795 103 - TSS region transcription start site region 71109
Tssr65050 7 24870047 to 24870061 14 + TSS region transcription start site region 65050
Dmrtc2 7 24870057 to 24877651 7594 + protein coding gene doublesex and mab-3 related transcription factor like family C2
Tssr65051 7 24870080 to 24870124 44 + TSS region transcription start site region 65051
Tssr65052 7 24870131 to 24870141 10 + TSS region transcription start site region 65052
Tssr65053 7 24870990 to 24870996 6 + TSS region transcription start site region 65053
Gm38966 7 24875748 to 24884549 8801 - lncRNA gene predicted gene, 38966
Cpgi18560 7 24883891 to 24885272 1381 CpG island CpG island 18560
Rps19 7 24884376 to 24889806 5430 + protein coding gene ribosomal protein S19
Tssr65054 7 24884568 to 24884607 39 + TSS region transcription start site region 65054
Tssr65055 7 24884611 to 24884644 33 + TSS region transcription start site region 65055
Tssr65056 7 24884657 to 24884681 24 + TSS region transcription start site region 65056
Tssr65057 7 24884782 to 24884802 20 + TSS region transcription start site region 65057
Tssr65058 7 24884809 to 24884826 17 + TSS region transcription start site region 65058
Tssr71110 7 24892193 to 24892233 40 - TSS region transcription start site region 71110
Tssr71111 7 24897241 to 24897274 33 - TSS region transcription start site region 71111
Tssr65059 7 24897489 to 24897516 27 + TSS region transcription start site region 65059
Cd79a 7 24897511 to 24902197 4686 + protein coding gene CD79A antigen (immunoglobulin-associated alpha)
Tssr65060 7 24898368 to 24898371 3 + TSS region transcription start site region 65060
Tssr65061 7 24899122 to 24899133 11 + TSS region transcription start site region 65061
Tssr65062 7 24899152 to 24899166 14 + TSS region transcription start site region 65062
Tssr65063 7 24899185 to 24899200 15 + TSS region transcription start site region 65063
Tssr65064 7 24899311 to 24899325 14 + TSS region transcription start site region 65064
Tssr65065 7 24901431 to 24901444 13 + TSS region transcription start site region 65065
Cpgi18561 7 24902475 to 24903512 1037 CpG island CpG island 18561
Tssr71112 7 24902827 to 24902844 17 - TSS region transcription start site region 71112
Arhgef1 7 24902917 to 24926594 23677 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 1
Tssr65066 7 24902953 to 24902963 10 + TSS region transcription start site region 65066
Tssr65067 7 24903011 to 24903080 69 + TSS region transcription start site region 65067
Cpgi18562 7 24904035 to 24904716 681 CpG island CpG island 18562
Tssr71113 7 24904130 to 24904141 11 - TSS region transcription start site region 71113
Tssr65068 7 24904237 to 24904252 15 + TSS region transcription start site region 65068
Tssr65069 7 24904339 to 24904351 12 + TSS region transcription start site region 65069
Tssr65070 7 24904356 to 24904377 21 + TSS region transcription start site region 65070
Tssr65071 7 24904384 to 24904411 27 + TSS region transcription start site region 65071
Tssr65072 7 24904416 to 24904459 43 + TSS region transcription start site region 65072
Tssr65073 7 24907306 to 24907326 20 + TSS region transcription start site region 65073
Tssr65074 7 24907333 to 24907344 11 + TSS region transcription start site region 65074
Tssr65075 7 24907618 to 24907632 14 + TSS region transcription start site region 65075
Tssr65076 7 24907669 to 24907732 63 + TSS region transcription start site region 65076
Cpgi18563 7 24912630 to 24912789 159 CpG island CpG island 18563
Tssr65077 7 24917915 to 24917928 13 + TSS region transcription start site region 65077
Tssr65078 7 24918639 to 24918648 9 + TSS region transcription start site region 65078
Tssr65079 7 24918788 to 24918799 11 + TSS region transcription start site region 65079
Tssr65080 7 24918831 to 24918846 15 + TSS region transcription start site region 65080
Gm4881 7 24927445 to 24944494 17049 - protein coding gene predicted gene 4881
Cpgi18564 7 24931689 to 24931914 225 CpG island CpG island 18564
Cpgi18565 7 24933634 to 24933816 182 CpG island CpG island 18565
Cpgi18566 7 24942822 to 24943448 626 CpG island CpG island 18566
Cpgi18567 7 24943944 to 24945450 1506 CpG island CpG island 18567
Cpgi18568 7 24948749 to 24949097 348 CpG island CpG island 18568
Gm36809 7 24953524 to 24954476 952 - lncRNA gene predicted gene, 36809
Cpgi18569 7 24954002 to 24955656 1654 CpG island CpG island 18569
Tssr71114 7 24954408 to 24954443 35 - TSS region transcription start site region 71114
Tssr71115 7 24954446 to 24954494 48 - TSS region transcription start site region 71115
Tssr71116 7 24954661 to 24954674 13 - TSS region transcription start site region 71116
Gm44970 7 24954917 to 24958241 3324 + lincRNA gene predicted gene 44970
Rabac1 7 24969750 to 24972728 2978 - protein coding gene Rab acceptor 1 (prenylated)
Mir7046 7 24970010 to 24970075 65 - miRNA gene microRNA 7046
Tssr71117 7 24971989 to 24972004 15 - TSS region transcription start site region 71117
Cpgi18570 7 24971992 to 24972961 969 CpG island CpG island 18570
Tssr71118 7 24972031 to 24972041 10 - TSS region transcription start site region 71118
Tssr71119 7 24972580 to 24972616 36 - TSS region transcription start site region 71119
Tssr71120 7 24972630 to 24972644 14 - TSS region transcription start site region 71120
Tssr71121 7 24972658 to 24972684 26 - TSS region transcription start site region 71121
Tssr71122 7 24972685 to 24972694 9 - TSS region transcription start site region 71122
Atp1a3 7 24978167 to 25005937 27770 - protein coding gene ATPase, Na+/K+ transporting, alpha 3 polypeptide
Tssr71123 7 24978301 to 24978310 9 - TSS region transcription start site region 71123
Tssr71124 7 24978315 to 24978342 27 - TSS region transcription start site region 71124
Tssr65081 7 24978345 to 24978359 14 + TSS region transcription start site region 65081
Tssr71125 7 24978347 to 24978364 17 - TSS region transcription start site region 71125
Tssr71126 7 24978390 to 24978400 10 - TSS region transcription start site region 71126
Tssr71127 7 24978409 to 24978419 10 - TSS region transcription start site region 71127
Tssr71128 7 24978433 to 24978436 3 - TSS region transcription start site region 71128
Tssr71129 7 24978443 to 24978467 24 - TSS region transcription start site region 71129
Tssr71130 7 24978512 to 24978521 9 - TSS region transcription start site region 71130
Tssr71131 7 24978543 to 24978554 11 - TSS region transcription start site region 71131
Tssr71132 7 24978555 to 24978563 8 - TSS region transcription start site region 71132
Tssr71133 7 24980104 to 24980127 23 - TSS region transcription start site region 71133
Tssr71134 7 24980588 to 24980622 34 - TSS region transcription start site region 71134
Tssr71135 7 24981610 to 24981622 12 - TSS region transcription start site region 71135
Tssr65082 7 24981736 to 24981752 16 + TSS region transcription start site region 65082
Tssr71136 7 24987514 to 24987537 23 - TSS region transcription start site region 71136
Mir7047 7 24987604 to 24987667 63 - miRNA gene microRNA 7047
Tssr71137 7 24988032 to 24988120 88 - TSS region transcription start site region 71137
Tssr71138 7 24988136 to 24988153 17 - TSS region transcription start site region 71138
Tssr71139 7 24988305 to 24988315 10 - TSS region transcription start site region 71139
Tssr71140 7 24989840 to 24989850 10 - TSS region transcription start site region 71140
Tssr71141 7 24989952 to 24989970 18 - TSS region transcription start site region 71141
Tssr65083 7 24990487 to 24990507 20 + TSS region transcription start site region 65083
Tssr65084 7 24990514 to 24990531 17 + TSS region transcription start site region 65084
Cpgi18571 7 24994180 to 24994917 737 CpG island CpG island 18571
Tssr71142 7 24994246 to 24994266 20 - TSS region transcription start site region 71142