Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:24412543-24783925

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smg9 7 24399619 to 24422778 23159 + protein coding gene smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
D7Bwg1348 7 24422604 to 24422768 164 DNA segment DNA segment, Chr 7, Brigham & Women's Genetics 1348
Irgc1 7 24431919 to 24445682 13763 - protein coding gene immunity-related GTPase family, cinema 1
Tssr71076 7 24431963 to 24431966 3 - TSS region transcription start site region 71076
Cpgi18538 7 24432064 to 24433381 1317 CpG island CpG island 18538
Tssr71077 7 24433579 to 24433603 24 - TSS region transcription start site region 71077
Tssr71078 7 24435462 to 24435469 7 - TSS region transcription start site region 71078
Tssr71079 7 24435482 to 24435488 6 - TSS region transcription start site region 71079
Tssr71080 7 24435491 to 24435554 63 - TSS region transcription start site region 71080
Tssr71081 7 24435563 to 24435580 17 - TSS region transcription start site region 71081
Tssr2127 7 24435582 to 24435585 3 - TSS region transcription start site region 2127
Tssr2128 7 24442536 to 24442559 23 + TSS region transcription start site region 2128
Tssr71082 7 24445588 to 24445610 22 - TSS region transcription start site region 71082
Tssr71083 7 24445635 to 24445637 2 - TSS region transcription start site region 71083
Tssr71084 7 24445694 to 24445703 9 - TSS region transcription start site region 71084
Tssr64968 7 24445790 to 24445797 7 + TSS region transcription start site region 64968
Gm36159 7 24448354 to 24451327 2973 + lincRNA gene predicted gene, 36159
Tssr71085 7 24450626 to 24450636 10 - TSS region transcription start site region 71085
Tssr64969 7 24450776 to 24450804 28 + TSS region transcription start site region 64969
Tssr2129 7 24450841 to 24450847 6 + TSS region transcription start site region 2129
Tssr2130 7 24457681 to 24457685 4 - TSS region transcription start site region 2130
Tssr71086 7 24457758 to 24457769 11 - TSS region transcription start site region 71086
Tssr71087 7 24457825 to 24457836 11 - TSS region transcription start site region 71087
Tssr2131 7 24457910 to 24457921 11 + TSS region transcription start site region 2131
Tssr64970 7 24457993 to 24458013 20 + TSS region transcription start site region 64970
Tssr64971 7 24458044 to 24458077 33 + TSS region transcription start site region 64971
Tssr64972 7 24460031 to 24460063 32 + TSS region transcription start site region 64972
Tssr64973 7 24460149 to 24460159 10 + TSS region transcription start site region 64973
Tssr64974 7 24461483 to 24461494 11 + TSS region transcription start site region 64974
Tssr64975 7 24461562 to 24461569 7 + TSS region transcription start site region 64975
Tssr64976 7 24462463 to 24462466 3 + TSS region transcription start site region 64976
Tssr64977 7 24462475 to 24462496 21 + TSS region transcription start site region 64977
Plaur 7 24462484 to 24475968 13484 + protein coding gene plasminogen activator, urokinase receptor
Tssr64978 7 24470303 to 24470305 2 + TSS region transcription start site region 64978
Tssr64979 7 24472579 to 24472621 42 + TSS region transcription start site region 64979
Tssr64980 7 24474198 to 24474201 3 + TSS region transcription start site region 64980
Tssr64981 7 24474291 to 24474304 13 + TSS region transcription start site region 64981
Tssr64982 7 24475240 to 24475261 21 + TSS region transcription start site region 64982
Tssr64983 7 24475303 to 24475320 17 + TSS region transcription start site region 64983
Tssr64984 7 24475504 to 24475543 39 + TSS region transcription start site region 64984
Cpgi18539 7 24481037 to 24482889 1852 CpG island CpG island 18539
Tssr64985 7 24481980 to 24481987 7 + TSS region transcription start site region 64985
Tssr64986 7 24481991 to 24482076 85 + TSS region transcription start site region 64986
Cadm4 7 24482023 to 24504533 22510 + protein coding gene cell adhesion molecule 4
Cpgi18540 7 24499493 to 24500735 1242 CpG island CpG island 18540
Tssr64987 7 24499599 to 24499604 5 + TSS region transcription start site region 64987
Tssr64988 7 24500728 to 24500738 10 + TSS region transcription start site region 64988
Cpgi18541 7 24501552 to 24501762 210 CpG island CpG island 18541
Tssr64989 7 24501624 to 24501637 13 + TSS region transcription start site region 64989
Tssr64990 7 24504492 to 24504500 8 + TSS region transcription start site region 64990
Cpgi18542 7 24506744 to 24507961 1217 CpG island CpG island 18542
Tssr64991 7 24507014 to 24507024 10 + TSS region transcription start site region 64991
Tssr64992 7 24507057 to 24507095 38 + TSS region transcription start site region 64992
Zfp428 7 24507087 to 24515682 8595 + protein coding gene zinc finger protein 428
Tssr64993 7 24507099 to 24507110 11 + TSS region transcription start site region 64993
Tssr64994 7 24507122 to 24507139 17 + TSS region transcription start site region 64994
Tssr64995 7 24507141 to 24507194 53 + TSS region transcription start site region 64995
Tssr64996 7 24507204 to 24507215 11 + TSS region transcription start site region 64996
Tssr64997 7 24507227 to 24507240 13 + TSS region transcription start site region 64997
Tssr64998 7 24507291 to 24507310 19 + TSS region transcription start site region 64998
Tssr64999 7 24507312 to 24507402 90 + TSS region transcription start site region 64999
Tssr71088 7 24507435 to 24507457 22 - TSS region transcription start site region 71088
Tssr65000 7 24507701 to 24507704 3 + TSS region transcription start site region 65000
Gm50092 7 24510483 to 24512455 1972 - protein coding gene predicted gene, 50092
Tssr2132 7 24512421 to 24512423 2 - TSS region transcription start site region 2132
Tssr71089 7 24512433 to 24512438 5 - TSS region transcription start site region 71089
Tssr71090 7 24512444 to 24512483 39 - TSS region transcription start site region 71090
Tssr65001 7 24512644 to 24512651 7 + TSS region transcription start site region 65001
Cpgi18543 7 24530051 to 24530872 821 CpG island CpG island 18543
Tssr65002 7 24530645 to 24530693 48 + TSS region transcription start site region 65002
Irgq 7 24530689 to 24538600 7911 + protein coding gene immunity-related GTPase family, Q
Tssr65003 7 24530723 to 24530734 11 + TSS region transcription start site region 65003
Tssr65004 7 24530817 to 24530841 24 + TSS region transcription start site region 65004
Tssr2133 7 24530935 to 24530942 7 + TSS region transcription start site region 2133
Cpgi18544 7 24531285 to 24532007 722 CpG island CpG island 18544
Tssr65005 7 24531411 to 24531423 12 + TSS region transcription start site region 65005
Cpgi18545 7 24533190 to 24534510 1320 CpG island CpG island 18545
Pinlyp 7 24541658 to 24546118 4460 - protein coding gene phospholipase A2 inhibitor and LY6/PLAUR domain containing
Tssr71091 7 24545994 to 24546012 18 - TSS region transcription start site region 71091
Cpgi18546 7 24546481 to 24547676 1195 CpG island CpG island 18546
Xrcc1 7 24546704 to 24573438 26734 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 1
Tssr65006 7 24547167 to 24547244 77 + TSS region transcription start site region 65006
Tssr65007 7 24547252 to 24547279 27 + TSS region transcription start site region 65007
Tssr65008 7 24547479 to 24547490 11 + TSS region transcription start site region 65008
Tssr65009 7 24547495 to 24547504 9 + TSS region transcription start site region 65009
Zfp575 7 24583838 to 24587641 3803 - protein coding gene zinc finger protein 575
Cpgi18547 7 24585107 to 24585270 163 CpG island CpG island 18547
Cpgi18548 7 24585472 to 24586437 965 CpG island CpG island 18548
Cpgi18549 7 24587340 to 24587787 447 CpG island CpG island 18549
Ethe1 7 24587543 to 24608925 21382 + protein coding gene ethylmalonic encephalopathy 1
Tssr71092 7 24587612 to 24587665 53 - TSS region transcription start site region 71092
Tssr71093 7 24589768 to 24589775 7 - TSS region transcription start site region 71093
Cpgi18550 7 24593640 to 24594189 549 CpG island CpG island 18550
Tssr2134 7 24593857 to 24593858 1 + TSS region transcription start site region 2134
Tssr65010 7 24593860 to 24593878 18 + TSS region transcription start site region 65010
Tssr65011 7 24593900 to 24593914 14 + TSS region transcription start site region 65011
Cpgi18551 7 24594886 to 24595108 222 CpG island CpG island 18551
Tssr65012 7 24608314 to 24608334 20 + TSS region transcription start site region 65012
Tssr65013 7 24608338 to 24608369 31 + TSS region transcription start site region 65013
Tssr65014 7 24608379 to 24608393 14 + TSS region transcription start site region 65014
Cpgi18552 7 24610595 to 24611622 1027 CpG island CpG island 18552
Tssr65015 7 24610748 to 24610776 28 + TSS region transcription start site region 65015
Phldb3 7 24610763 to 24629297 18534 + protein coding gene pleckstrin homology like domain, family B, member 3
Tssr71094 7 24611188 to 24611206 18 - TSS region transcription start site region 71094
Tssr65016 7 24611314 to 24611349 35 + TSS region transcription start site region 65016
Cpgi18553 7 24612421 to 24613068 647 CpG island CpG island 18553
D7Mit180 7 24627166 to 24627280 114 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 180
Gm26550 7 24631145 to 24637916 6771 - antisense lncRNA gene predicted gene, 26550
Tssr65017 7 24636479 to 24636520 41 + TSS region transcription start site region 65017
Tssr65018 7 24636544 to 24636564 20 + TSS region transcription start site region 65018
Tssr65019 7 24636566 to 24636589 23 + TSS region transcription start site region 65019
Lypd3 7 24636570 to 24641118 4548 + protein coding gene Ly6/Plaur domain containing 3
Tssr2135 7 24636613 to 24636614 1 + TSS region transcription start site region 2135
Cpgi18554 7 24637071 to 24637385 314 CpG island CpG island 18554
Cpgi18555 7 24638337 to 24639142 805 CpG island CpG island 18555
Tssr65020 7 24638776 to 24638783 7 + TSS region transcription start site region 65020
Tssr65021 7 24638784 to 24638797 13 + TSS region transcription start site region 65021
Cpgi18556 7 24640029 to 24640298 269 CpG island CpG island 18556
Tssr65022 7 24640199 to 24640217 18 + TSS region transcription start site region 65022
Tssr65023 7 24655780 to 24655786 6 + TSS region transcription start site region 65023
Gm4598 7 24661294 to 24663109 1815 + lincRNA gene predicted gene 4598
2200007N16Rik 7 24666733 to 24666970 237 + unclassified gene RIKEN cDNA 2200007N16 gene
Tex101 7 24668012 to 24672050 4038 - protein coding gene testis expressed gene 101
Cpgi18557 7 24671973 to 24672284 311 CpG island CpG island 18557
Tssr71095 7 24672032 to 24672048 16 - TSS region transcription start site region 71095
Tssr71096 7 24672054 to 24672066 12 - TSS region transcription start site region 71096
Tssr71097 7 24672068 to 24672077 9 - TSS region transcription start site region 71097
Tssr71098 7 24676670 to 24676679 9 - TSS region transcription start site region 71098
Gm44971 7 24684306 to 24684642 336 + pseudogene predicted gene 44971
Gm1096 7 24687908 to 24695219 7311 + protein coding gene predicted gene 1096
Gm36776 7 24706415 to 24706617 202 - pseudogene predicted gene, 36776
Cpgi18558 7 24708958 to 24709154 196 CpG island CpG island 18558
Tssr2136 7 24709222 to 24709228 6 + TSS region transcription start site region 2136
Tssr65024 7 24709229 to 24709234 5 + TSS region transcription start site region 65024
Tssr65025 7 24709237 to 24709271 34 + TSS region transcription start site region 65025
Lypd10 7 24709242 to 24714535 5293 + protein coding gene Ly6/PLAUR domain containing 10
Tssr2137 7 24709287 to 24709290 3 + TSS region transcription start site region 2137
Lypd11 7 24715023 to 24726908 11885 - protein coding gene Ly6/PLAUR domain containing 11
Gm44972 7 24729720 to 24730125 405 - pseudogene predicted gene 44972
D7Mit264 7 24743107 to 24743207 100 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 264
Cd177 7 24743983 to 24760311 16328 - protein coding gene CD177 antigen
Tssr71099 7 24750390 to 24750427 37 - TSS region transcription start site region 71099
Tssr71100 7 24750831 to 24750842 11 - TSS region transcription start site region 71100
Tssr71101 7 24752052 to 24752063 11 - TSS region transcription start site region 71101
Tssr71102 7 24760311 to 24760327 16 - TSS region transcription start site region 71102
Tssr71103 7 24765930 to 24765938 8 - TSS region transcription start site region 71103
Tssr71104 7 24765966 to 24765989 23 - TSS region transcription start site region 71104
Tssr2138 7 24765999 to 24766002 3 - TSS region transcription start site region 2138
Tssr71105 7 24766015 to 24766020 5 - TSS region transcription start site region 71105
Tssr65026 7 24771673 to 24771675 2 + TSS region transcription start site region 65026
Tssr65027 7 24777172 to 24777247 75 + TSS region transcription start site region 65027
Ceacam10 7 24777206 to 24784657 7451 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 10
Tssr65028 7 24778134 to 24778138 4 + TSS region transcription start site region 65028
Tssr65029 7 24778144 to 24778152 8 + TSS region transcription start site region 65029
Tssr65030 7 24778168 to 24778186 18 + TSS region transcription start site region 65030
Tssr65031 7 24778217 to 24778218 1 + TSS region transcription start site region 65031
Tssr65032 7 24778333 to 24778341 8 + TSS region transcription start site region 65032
Tssr65033 7 24778411 to 24778421 10 + TSS region transcription start site region 65033
Tssr65034 7 24780691 to 24780726 35 + TSS region transcription start site region 65034
Tssr65035 7 24780865 to 24780871 6 + TSS region transcription start site region 65035
Tssr65036 7 24780881 to 24780898 17 + TSS region transcription start site region 65036
Tssr71106 7 24780901 to 24780931 30 - TSS region transcription start site region 71106
Tssr65037 7 24780945 to 24780954 9 + TSS region transcription start site region 65037