Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:19239025-19399043

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opa3 7 19228389 to 19246817 18428 + protein coding gene optic atrophy 3
Tssr64808 7 19242128 to 19242131 3 + TSS region transcription start site region 64808
Gm25134 7 19242130 to 19242289 159 + snRNA gene predicted gene, 25134
Gm38499 7 19249435 to 19256546 7111 + protein coding gene predicted gene, 38499
Tssr64809 7 19256120 to 19256129 9 + TSS region transcription start site region 64809
Vasp 7 19256929 to 19271817 14888 - protein coding gene vasodilator-stimulated phosphoprotein
Tssr64810 7 19256931 to 19256940 9 + TSS region transcription start site region 64810
Tssr70878 7 19257611 to 19257626 15 - TSS region transcription start site region 70878
1700058P15Rik 7 19258492 to 19259739 1247 + antisense lncRNA gene RIKEN cDNA 1700058P15 gene
Tssr64811 7 19258508 to 19258524 16 + TSS region transcription start site region 64811
Tssr70879 7 19260682 to 19260702 20 - TSS region transcription start site region 70879
Tssr70880 7 19260925 to 19260943 18 - TSS region transcription start site region 70880
Tssr70881 7 19260988 to 19261007 19 - TSS region transcription start site region 70881
Tssr70882 7 19262030 to 19262059 29 - TSS region transcription start site region 70882
Tssr70883 7 19264469 to 19264483 14 - TSS region transcription start site region 70883
Tssr70884 7 19264810 to 19264828 18 - TSS region transcription start site region 70884
Tssr70885 7 19265989 to 19266021 32 - TSS region transcription start site region 70885
Tssr64812 7 19266296 to 19266312 16 + TSS region transcription start site region 64812
Tssr70886 7 19266542 to 19266583 41 - TSS region transcription start site region 70886
Tssr70887 7 19270443 to 19270447 4 - TSS region transcription start site region 70887
Cpgi18458 7 19271346 to 19272020 674 CpG island CpG island 18458
Tssr2101 7 19271539 to 19271544 5 - TSS region transcription start site region 2101
Tssr2102 7 19271551 to 19271558 7 - TSS region transcription start site region 2102
Tssr70888 7 19271576 to 19271589 13 - TSS region transcription start site region 70888
Tssr70889 7 19271604 to 19271617 13 - TSS region transcription start site region 70889
Tssr64813 7 19271677 to 19271704 27 + TSS region transcription start site region 64813
Tssr2103 7 19271696 to 19271700 4 - TSS region transcription start site region 2103
Tssr2104 7 19271752 to 19271757 5 - TSS region transcription start site region 2104
Tssr2105 7 19271770 to 19271776 6 - TSS region transcription start site region 2105
Tssr2106 7 19271783 to 19271792 9 - TSS region transcription start site region 2106
Tssr70890 7 19271797 to 19271823 26 - TSS region transcription start site region 70890
Tssr64814 7 19271948 to 19271953 5 + TSS region transcription start site region 64814
Cpgi18459 7 19272296 to 19272675 379 CpG island CpG island 18459
Tssr70891 7 19272552 to 19272562 10 - TSS region transcription start site region 70891
Tssr70892 7 19272714 to 19272753 39 - TSS region transcription start site region 70892
Ppm1n 7 19276805 to 19280064 3259 - protein coding gene protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
Cpgi18460 7 19278993 to 19280094 1101 CpG island CpG island 18460
Tssr64815 7 19279186 to 19279210 24 + TSS region transcription start site region 64815
Tssr70893 7 19280032 to 19280056 24 - TSS region transcription start site region 70893
Cpgi18461 7 19282257 to 19283411 1154 CpG island CpG island 18461
Tssr64816 7 19282579 to 19282609 30 + TSS region transcription start site region 64816
Tssr64817 7 19282613 to 19282702 89 + TSS region transcription start site region 64817
Rtn2 7 19282624 to 19296160 13536 + protein coding gene reticulon 2 (Z-band associated protein)
Cpgi18462 7 19286788 to 19287050 262 CpG island CpG island 18462
Cpgi18463 7 19290818 to 19291051 233 CpG island CpG island 18463
Tssr64818 7 19291070 to 19291124 54 + TSS region transcription start site region 64818
Tssr64819 7 19291134 to 19291139 5 + TSS region transcription start site region 64819
Cpgi18464 7 19293094 to 19293403 309 CpG island CpG island 18464
Cpgi18465 7 19295832 to 19296024 192 CpG island CpG island 18465
Gm26802 7 19298260 to 19300770 2510 - lincRNA gene predicted gene, 26802
Tssr64820 7 19301235 to 19301250 15 + TSS region transcription start site region 64820
n-TUtca2 7 19301244 to 19301329 85 + tRNA gene nuclear encoded tRNA selenocysteine 2 (anticodon TCA)
Fosb 7 19302696 to 19310051 7355 - protein coding gene FBJ osteosarcoma oncogene B
Tssr70894 7 19302941 to 19302952 11 - TSS region transcription start site region 70894
Tssr70895 7 19303375 to 19303386 11 - TSS region transcription start site region 70895
Tssr70896 7 19303558 to 19303570 12 - TSS region transcription start site region 70896
Tssr70897 7 19303623 to 19303641 18 - TSS region transcription start site region 70897
Tssr64821 7 19304025 to 19304043 18 + TSS region transcription start site region 64821
Tssr64822 7 19304082 to 19304092 10 + TSS region transcription start site region 64822
Tssr64823 7 19304101 to 19304111 10 + TSS region transcription start site region 64823
Tssr64824 7 19304307 to 19304311 4 + TSS region transcription start site region 64824
Tssr70898 7 19304428 to 19304446 18 - TSS region transcription start site region 70898
Tssr70899 7 19304504 to 19304526 22 - TSS region transcription start site region 70899
Cpgi18466 7 19304693 to 19305367 674 CpG island CpG island 18466
Tssr64825 7 19304783 to 19304799 16 + TSS region transcription start site region 64825
Tssr70900 7 19307193 to 19307204 11 - TSS region transcription start site region 70900
Tssr64826 7 19307237 to 19307256 19 + TSS region transcription start site region 64826
Tssr64827 7 19307329 to 19307359 30 + TSS region transcription start site region 64827
Cpgi18467 7 19307340 to 19307700 360 CpG island CpG island 18467
Tssr2107 7 19307415 to 19307426 11 - TSS region transcription start site region 2107
Cpgi18468 7 19308260 to 19310757 2497 CpG island CpG island 18468
Tssr70901 7 19309691 to 19309700 9 - TSS region transcription start site region 70901
Tssr70902 7 19309740 to 19309751 11 - TSS region transcription start site region 70902
Tssr70903 7 19309773 to 19309793 20 - TSS region transcription start site region 70903
Tssr70904 7 19310005 to 19310020 15 - TSS region transcription start site region 70904
Tssr70905 7 19310035 to 19310050 15 - TSS region transcription start site region 70905
Tssr70906 7 19310197 to 19310228 31 - TSS region transcription start site region 70906
Tssr2108 7 19310482 to 19310487 5 + TSS region transcription start site region 2108
Tssr64828 7 19316722 to 19316736 14 + TSS region transcription start site region 64828
Tssr64829 7 19319025 to 19319043 18 + TSS region transcription start site region 64829
Cpgi18469 7 19319522 to 19320353 831 CpG island CpG island 18469
Tssr2109 7 19319707 to 19319725 18 - TSS region transcription start site region 2109
Tssr70907 7 19320010 to 19320028 18 - TSS region transcription start site region 70907
Tssr70908 7 19320040 to 19320051 11 - TSS region transcription start site region 70908
D830036C21Rik 7 19320117 to 19342515 22398 - lincRNA gene RIKEN cDNA D830036C21 gene
Tssr64830 7 19320321 to 19320327 6 + TSS region transcription start site region 64830
Cpgi18470 7 19327129 to 19327548 419 CpG island CpG island 18470
Tssr70909 7 19327236 to 19327263 27 - TSS region transcription start site region 70909
Cpgi18471 7 19332556 to 19333492 936 CpG island CpG island 18471
Tssr64831 7 19332952 to 19332975 23 + TSS region transcription start site region 64831
Tssr64832 7 19333067 to 19333098 31 + TSS region transcription start site region 64832
Gm44698 7 19333129 to 19337655 4526 + lincRNA gene predicted gene 44698
Cpgi18472 7 19341826 to 19342952 1126 CpG island CpG island 18472
Tssr64833 7 19342259 to 19342265 6 + TSS region transcription start site region 64833
Tssr64834 7 19344542 to 19344555 13 + TSS region transcription start site region 64834
Ercc1 7 19344778 to 19356524 11746 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 1
Cpgi18473 7 19344947 to 19345653 706 CpG island CpG island 18473
Tssr64835 7 19345084 to 19345127 43 + TSS region transcription start site region 64835
Tssr64836 7 19345135 to 19345147 12 + TSS region transcription start site region 64836
Tssr64837 7 19345593 to 19345616 23 + TSS region transcription start site region 64837
Tssr64838 7 19345636 to 19345651 15 + TSS region transcription start site region 64838
Tssr64839 7 19345662 to 19345692 30 + TSS region transcription start site region 64839
Cd3eap 7 19356014 to 19359483 3469 - protein coding gene CD3E antigen, epsilon polypeptide associated protein
Cpgi18474 7 19359096 to 19360628 1532 CpG island CpG island 18474
Tssr70910 7 19359416 to 19359476 60 - TSS region transcription start site region 70910
Tssr70911 7 19359477 to 19359488 11 - TSS region transcription start site region 70911
Tssr64840 7 19359740 to 19359758 18 + TSS region transcription start site region 64840
Ppp1r13l 7 19359749 to 19378533 18784 + protein coding gene protein phosphatase 1, regulatory subunit 13 like
Cpgi18475 7 19360961 to 19361397 436 CpG island CpG island 18475
Tssr64841 7 19361186 to 19361201 15 + TSS region transcription start site region 64841
Tssr64842 7 19361207 to 19361262 55 + TSS region transcription start site region 64842
Cpgi18476 7 19361663 to 19362061 398 CpG island CpG island 18476
Cpgi18477 7 19363877 to 19364227 350 CpG island CpG island 18477
Cpgi18478 7 19368496 to 19368774 278 CpG island CpG island 18478
Tssr64843 7 19368502 to 19368553 51 + TSS region transcription start site region 64843
Cpgi18479 7 19369788 to 19370514 726 CpG island CpG island 18479
Cpgi18480 7 19375204 to 19375857 653 CpG island CpG island 18480
Cpgi18481 7 19381552 to 19382660 1108 CpG island CpG island 18481
Tssr64844 7 19382005 to 19382052 47 + TSS region transcription start site region 64844
Ercc2 7 19382039 to 19395692 13653 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 2
Gm26852 7 19382220 to 19392718 10498 - antisense lncRNA gene predicted gene, 26852
Mir343 7 19386643 to 19386717 74 + miRNA gene microRNA 343
Klc3 7 19394437 to 19404104 9667 - protein coding gene kinesin light chain 3