Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:18966712-19296729

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr64760 7 18987518 to 18987524 6 + TSS region transcription start site region 64760
Nanos2 7 18987524 to 18988962 1438 + protein coding gene nanos C2HC-type zinc finger 2
Gm45058 7 18987559 to 18988324 765 - antisense lncRNA gene predicted gene 45058
Gm10676 7 18989554 to 18992774 3220 - protein coding gene predicted gene 10676
Cpgi18425 7 18990453 to 18992954 2501 CpG island CpG island 18425
Mypop 7 18991245 to 19001766 10521 + protein coding gene Myb-related transcription factor, partner of profilin
Tssr64761 7 18991289 to 18991314 25 + TSS region transcription start site region 64761
Tssr64762 7 18992400 to 18992422 22 + TSS region transcription start site region 64762
Tssr64763 7 18992425 to 18992428 3 + TSS region transcription start site region 64763
Tssr64764 7 18992429 to 18992439 10 + TSS region transcription start site region 64764
Mypopos 7 18993367 to 19001222 7855 - antisense lncRNA gene Myb-related transcription factor, partner of profilin, opposite strand
D7Mit76 7 18994869 to 18995092 223 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 76
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
Cpgi18426 7 19001140 to 19001293 153 CpG island CpG island 18426
Tssr70863 7 19001160 to 19001174 14 - TSS region transcription start site region 70863
Tssr70864 7 19001184 to 19001239 55 - TSS region transcription start site region 70864
Cpgi18427 7 19003801 to 19005620 1819 CpG island CpG island 18427
Tssr64765 7 19004047 to 19004095 48 + TSS region transcription start site region 64765
Irf2bp1 7 19004065 to 19006763 2698 + protein coding gene interferon regulatory factor 2 binding protein 1
Tssr70865 7 19004233 to 19004266 33 - TSS region transcription start site region 70865
Tssr64766 7 19004359 to 19004377 18 + TSS region transcription start site region 64766
Cpgi18428 7 19012266 to 19012487 221 CpG island CpG island 18428
Foxa3 7 19013284 to 19023538 10254 - protein coding gene forkhead box A3
Cpgi18429 7 19014489 to 19014736 247 CpG island CpG island 18429
Cpgi18430 7 19023166 to 19025045 1879 CpG island CpG island 18430
Tssr70866 7 19023542 to 19023546 4 - TSS region transcription start site region 70866
Tssr64767 7 19024245 to 19024270 25 + TSS region transcription start site region 64767
Tssr64768 7 19024364 to 19024385 21 + TSS region transcription start site region 64768
Sympk 7 19024377 to 19054618 30241 + protein coding gene symplekin
Tssr64769 7 19024387 to 19024439 52 + TSS region transcription start site region 64769
Tssr70867 7 19037212 to 19037221 9 - TSS region transcription start site region 70867
Tssr64770 7 19037345 to 19037363 18 + TSS region transcription start site region 64770
Tssr64771 7 19052312 to 19052348 36 + TSS region transcription start site region 64771
Cpgi18431 7 19054094 to 19054250 156 CpG island CpG island 18431
Cpgi18432 7 19054612 to 19054888 276 CpG island CpG island 18432
Tssr64772 7 19054662 to 19054674 12 + TSS region transcription start site region 64772
Tssr64773 7 19054683 to 19054707 24 + TSS region transcription start site region 64773
Rsph6a 7 19054690 to 19074447 19757 + protein coding gene radial spoke head 6 homolog A (Chlamydomonas)
Cpgi18433 7 19065292 to 19066148 856 CpG island CpG island 18433
Cpgi18434 7 19075615 to 19077482 1867 CpG island CpG island 18434
Tssr64774 7 19076071 to 19076117 46 + TSS region transcription start site region 64774
Tssr64775 7 19076173 to 19076237 64 + TSS region transcription start site region 64775
Dmwd 7 19076227 to 19082776 6549 + protein coding gene dystrophia myotonica-containing WD repeat motif
Tssr64776 7 19076242 to 19076273 31 + TSS region transcription start site region 64776
Tssr64777 7 19076401 to 19076409 8 + TSS region transcription start site region 64777
Cpgi18435 7 19077835 to 19078126 291 CpG island CpG island 18435
Tssr64778 7 19080656 to 19080666 10 + TSS region transcription start site region 64778
Tssr64779 7 19080706 to 19080723 17 + TSS region transcription start site region 64779
Tssr64780 7 19083842 to 19083894 52 + TSS region transcription start site region 64780
Dmpk 7 19083849 to 19093821 9972 + protein coding gene dystrophia myotonica-protein kinase
Cpgi18436 7 19086049 to 19086382 333 CpG island CpG island 18436
Tssr64781 7 19086272 to 19086333 61 + TSS region transcription start site region 64781
Mir3100 7 19086828 to 19086892 64 + miRNA gene microRNA 3100
Cpgi18437 7 19086901 to 19087069 168 CpG island CpG island 18437
Cpgi18438 7 19091817 to 19092160 343 CpG island CpG island 18438
Cpgi18439 7 19092452 to 19092664 212 CpG island CpG island 18439
Cpgi18440 7 19092940 to 19093620 680 CpG island CpG island 18440
Tssr64782 7 19092970 to 19092982 12 + TSS region transcription start site region 64782
Cpgi18441 7 19093870 to 19096018 2148 CpG island CpG island 18441
Six5 7 19094594 to 19098549 3955 + protein coding gene sine oculis-related homeobox 5
Tssr64783 7 19094615 to 19094633 18 + TSS region transcription start site region 64783
Tssr64784 7 19094714 to 19094739 25 + TSS region transcription start site region 64784
Tssr70868 7 19095556 to 19095572 16 - TSS region transcription start site region 70868
Gm4969 7 19099046 to 19118368 19322 - protein coding gene predicted gene 4969
Cpgi18442 7 19117995 to 19118846 851 CpG island CpG island 18442
Tssr70869 7 19118332 to 19118353 21 - TSS region transcription start site region 70869
Tssr70870 7 19118357 to 19118404 47 - TSS region transcription start site region 70870
Tssr64785 7 19119853 to 19119913 60 + TSS region transcription start site region 64785
Fbxo46 7 19119859 to 19138261 18402 + protein coding gene F-box protein 46
Cpgi18443 7 19131421 to 19131871 450 CpG island CpG island 18443
Tssr64786 7 19131686 to 19131709 23 + TSS region transcription start site region 64786
Tssr64787 7 19131712 to 19131729 17 + TSS region transcription start site region 64787
Cpgi18444 7 19136815 to 19136995 180 CpG island CpG island 18444
Tssr64788 7 19137528 to 19137532 4 + TSS region transcription start site region 64788
Tssr70871 7 19140170 to 19140187 17 - TSS region transcription start site region 70871
Qpctl 7 19140217 to 19149196 8979 - protein coding gene glutaminyl-peptide cyclotransferase-like
Cpgi18445 7 19148844 to 19150061 1217 CpG island CpG island 18445
Tssr70872 7 19149189 to 19149273 84 - TSS region transcription start site region 70872
Tssr64789 7 19149810 to 19149844 34 + TSS region transcription start site region 64789
Snrpd2 7 19149838 to 19152726 2888 + protein coding gene small nuclear ribonucleoprotein D2
Gipr 7 19156061 to 19166127 10066 - protein coding gene gastric inhibitory polypeptide receptor
Cpgi18446 7 19157328 to 19157771 443 CpG island CpG island 18446
Cpgi18447 7 19159458 to 19159808 350 CpG island CpG island 18447
Cpgi18448 7 19160322 to 19160540 218 CpG island CpG island 18448
Tssr70873 7 19165133 to 19165154 21 - TSS region transcription start site region 70873
Tssr70874 7 19166119 to 19166134 15 - TSS region transcription start site region 70874
C130070B15Rik 7 19167136 to 19169680 2544 unclassified non-coding RNA gene RIKEN cDNA C130070B15 gene
Tssr70875 7 19169659 to 19169682 23 - TSS region transcription start site region 70875
Cpgi18449 7 19172935 to 19173194 259 CpG island CpG island 18449
Cpgi18450 7 19176294 to 19176810 516 CpG island CpG island 18450
Tssr64790 7 19176416 to 19176440 24 + TSS region transcription start site region 64790
Eml2 7 19176421 to 19206482 30061 + protein coding gene echinoderm microtubule associated protein like 2
Tssr64791 7 19176446 to 19176474 28 + TSS region transcription start site region 64791
Tssr64792 7 19176483 to 19176512 29 + TSS region transcription start site region 64792
Tssr64793 7 19176513 to 19176537 24 + TSS region transcription start site region 64793
Tssr64794 7 19176648 to 19176693 45 + TSS region transcription start site region 64794
Cpgi18451 7 19178125 to 19178294 169 CpG island CpG island 18451
Tssr64795 7 19178203 to 19178239 36 + TSS region transcription start site region 64795
Cpgi18452 7 19178957 to 19179931 974 CpG island CpG island 18452
Tssr64796 7 19178981 to 19179037 56 + TSS region transcription start site region 64796
Cpgi18453 7 19181076 to 19181573 497 CpG island CpG island 18453
Tssr64797 7 19181162 to 19181202 40 + TSS region transcription start site region 64797
Tssr64798 7 19181211 to 19181221 10 + TSS region transcription start site region 64798
Tssr64799 7 19181293 to 19181325 32 + TSS region transcription start site region 64799
Tssr64800 7 19181407 to 19181457 50 + TSS region transcription start site region 64800
Mir330 7 19181465 to 19181562 97 + miRNA gene microRNA 330
Cpgi18454 7 19196091 to 19196612 521 CpG island CpG island 18454
Tssr64801 7 19202372 to 19202384 12 + TSS region transcription start site region 64801
Cpgi18455 7 19212482 to 19212807 325 CpG island CpG island 18455
Tssr64802 7 19212521 to 19212546 25 + TSS region transcription start site region 64802
Gpr4 7 19212538 to 19224174 11636 + protein coding gene G protein-coupled receptor 4
Tssr64803 7 19212553 to 19212605 52 + TSS region transcription start site region 64803
Cpgi18456 7 19222345 to 19222948 603 CpG island CpG island 18456
D7Jcs8 7 19225296 to 19225460 164 DNA segment DNA segment, Chr 7, John C. Schimenti 8
Cpgi18457 7 19227459 to 19229229 1770 CpG island CpG island 18457
Tssr70876 7 19227803 to 19227816 13 - TSS region transcription start site region 70876
Tssr70877 7 19227981 to 19227998 17 - TSS region transcription start site region 70877
Tssr64804 7 19228327 to 19228351 24 + TSS region transcription start site region 64804
Tssr64805 7 19228376 to 19228416 40 + TSS region transcription start site region 64805
Opa3 7 19228389 to 19246817 18428 + protein coding gene optic atrophy 3
Tssr64806 7 19228925 to 19228944 19 + TSS region transcription start site region 64806
Tssr64807 7 19228960 to 19228971 11 + TSS region transcription start site region 64807
Tssr64808 7 19242128 to 19242131 3 + TSS region transcription start site region 64808
Gm25134 7 19242130 to 19242289 159 + snRNA gene predicted gene, 25134
Gm38499 7 19249435 to 19256546 7111 + protein coding gene predicted gene, 38499
Tssr64809 7 19256120 to 19256129 9 + TSS region transcription start site region 64809
Vasp 7 19256929 to 19271817 14888 - protein coding gene vasodilator-stimulated phosphoprotein
Tssr64810 7 19256931 to 19256940 9 + TSS region transcription start site region 64810
Tssr70878 7 19257611 to 19257626 15 - TSS region transcription start site region 70878
1700058P15Rik 7 19258492 to 19259739 1247 + antisense lncRNA gene RIKEN cDNA 1700058P15 gene
Tssr64811 7 19258508 to 19258524 16 + TSS region transcription start site region 64811
Tssr70879 7 19260682 to 19260702 20 - TSS region transcription start site region 70879
Tssr70880 7 19260925 to 19260943 18 - TSS region transcription start site region 70880
Tssr70881 7 19260988 to 19261007 19 - TSS region transcription start site region 70881
Tssr70882 7 19262030 to 19262059 29 - TSS region transcription start site region 70882
Tssr70883 7 19264469 to 19264483 14 - TSS region transcription start site region 70883
Tssr70884 7 19264810 to 19264828 18 - TSS region transcription start site region 70884
Tssr70885 7 19265989 to 19266021 32 - TSS region transcription start site region 70885
Tssr64812 7 19266296 to 19266312 16 + TSS region transcription start site region 64812
Tssr70886 7 19266542 to 19266583 41 - TSS region transcription start site region 70886
Tssr70887 7 19270443 to 19270447 4 - TSS region transcription start site region 70887
Cpgi18458 7 19271346 to 19272020 674 CpG island CpG island 18458
Tssr2101 7 19271539 to 19271544 5 - TSS region transcription start site region 2101
Tssr2102 7 19271551 to 19271558 7 - TSS region transcription start site region 2102
Tssr70888 7 19271576 to 19271589 13 - TSS region transcription start site region 70888
Tssr70889 7 19271604 to 19271617 13 - TSS region transcription start site region 70889
Tssr64813 7 19271677 to 19271704 27 + TSS region transcription start site region 64813
Tssr2103 7 19271696 to 19271700 4 - TSS region transcription start site region 2103
Tssr2104 7 19271752 to 19271757 5 - TSS region transcription start site region 2104
Tssr2105 7 19271770 to 19271776 6 - TSS region transcription start site region 2105
Tssr2106 7 19271783 to 19271792 9 - TSS region transcription start site region 2106
Tssr70890 7 19271797 to 19271823 26 - TSS region transcription start site region 70890
Tssr64814 7 19271948 to 19271953 5 + TSS region transcription start site region 64814
Cpgi18459 7 19272296 to 19272675 379 CpG island CpG island 18459
Tssr70891 7 19272552 to 19272562 10 - TSS region transcription start site region 70891
Tssr70892 7 19272714 to 19272753 39 - TSS region transcription start site region 70892
Ppm1n 7 19276805 to 19280064 3259 - protein coding gene protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
Cpgi18460 7 19278993 to 19280094 1101 CpG island CpG island 18460
Tssr64815 7 19279186 to 19279210 24 + TSS region transcription start site region 64815
Tssr70893 7 19280032 to 19280056 24 - TSS region transcription start site region 70893
Cpgi18461 7 19282257 to 19283411 1154 CpG island CpG island 18461
Tssr64816 7 19282579 to 19282609 30 + TSS region transcription start site region 64816
Tssr64817 7 19282613 to 19282702 89 + TSS region transcription start site region 64817
Rtn2 7 19282624 to 19296160 13536 + protein coding gene reticulon 2 (Z-band associated protein)
Cpgi18462 7 19286788 to 19287050 262 CpG island CpG island 18462
Cpgi18463 7 19290818 to 19291051 233 CpG island CpG island 18463
Tssr64818 7 19291070 to 19291124 54 + TSS region transcription start site region 64818
Tssr64819 7 19291134 to 19291139 5 + TSS region transcription start site region 64819
Cpgi18464 7 19293094 to 19293403 309 CpG island CpG island 18464
Cpgi18465 7 19295832 to 19296024 192 CpG island CpG island 18465
Sst2 7 119886157 to 18994869 -100891288 QTL susceptibility to tuberculosis 2