Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:18896160-19106174

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc61 7 18890883 to 18910411 19528 - protein coding gene coiled-coil domain containing 61
Cpgi18420 7 18909962 to 18910573 611 CpG island CpG island 18420
Tssr70858 7 18910240 to 18910285 45 - TSS region transcription start site region 70858
Tssr70859 7 18910352 to 18910376 24 - TSS region transcription start site region 70859
Tssr70860 7 18910377 to 18910388 11 - TSS region transcription start site region 70860
Tssr70861 7 18910391 to 18910411 20 - TSS region transcription start site region 70861
Cpgi18421 7 18921246 to 18921451 205 CpG island CpG island 18421
Cpgi18422 7 18925201 to 18926708 1507 CpG island CpG island 18422
Tssr64753 7 18925407 to 18925459 52 + TSS region transcription start site region 64753
Tssr70862 7 18925776 to 18925786 10 - TSS region transcription start site region 70862
Tssr64754 7 18925863 to 18925899 36 + TSS region transcription start site region 64754
Nova2 7 18925888 to 18965319 39431 + protein coding gene neuro-oncological ventral antigen 2
Tssr64755 7 18925917 to 18925924 7 + TSS region transcription start site region 64755
Tssr2100 7 18925968 to 18926028 60 + TSS region transcription start site region 2100
Tssr64756 7 18950460 to 18950472 12 + TSS region transcription start site region 64756
Gm38952 7 18956197 to 18957536 1339 - lncRNA gene predicted gene, 38952
Cpgi18423 7 18957374 to 18958879 1505 CpG island CpG island 18423
Tssr64757 7 18958579 to 18958594 15 + TSS region transcription start site region 64757
Tssr64758 7 18959024 to 18959027 3 + TSS region transcription start site region 64758
Gm26821 7 18962415 to 18965173 2758 - lincRNA gene predicted gene, 26821
Tssr64759 7 18962560 to 18962564 4 + TSS region transcription start site region 64759
Cpgi18424 7 18962796 to 18963674 878 CpG island CpG island 18424
D7Jcs7 7 18965308 to 18965515 207 DNA segment DNA segment, Chr 7, John C. Schimenti 7
Tssr64760 7 18987518 to 18987524 6 + TSS region transcription start site region 64760
Nanos2 7 18987524 to 18988962 1438 + protein coding gene nanos C2HC-type zinc finger 2
Gm45058 7 18987559 to 18988324 765 - antisense lncRNA gene predicted gene 45058
Gm10676 7 18989554 to 18992774 3220 - protein coding gene predicted gene 10676
Cpgi18425 7 18990453 to 18992954 2501 CpG island CpG island 18425
Mypop 7 18991245 to 19001766 10521 + protein coding gene Myb-related transcription factor, partner of profilin
Tssr64761 7 18991289 to 18991314 25 + TSS region transcription start site region 64761
Tssr64762 7 18992400 to 18992422 22 + TSS region transcription start site region 64762
Tssr64763 7 18992425 to 18992428 3 + TSS region transcription start site region 64763
Tssr64764 7 18992429 to 18992439 10 + TSS region transcription start site region 64764
Mypopos 7 18993367 to 19001222 7855 - antisense lncRNA gene Myb-related transcription factor, partner of profilin, opposite strand
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
D7Mit76 7 18994869 to 18995092 223 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 76
Cpgi18426 7 19001140 to 19001293 153 CpG island CpG island 18426
Tssr70863 7 19001160 to 19001174 14 - TSS region transcription start site region 70863
Tssr70864 7 19001184 to 19001239 55 - TSS region transcription start site region 70864
Cpgi18427 7 19003801 to 19005620 1819 CpG island CpG island 18427
Tssr64765 7 19004047 to 19004095 48 + TSS region transcription start site region 64765
Irf2bp1 7 19004065 to 19006763 2698 + protein coding gene interferon regulatory factor 2 binding protein 1
Tssr70865 7 19004233 to 19004266 33 - TSS region transcription start site region 70865
Tssr64766 7 19004359 to 19004377 18 + TSS region transcription start site region 64766
Cpgi18428 7 19012266 to 19012487 221 CpG island CpG island 18428
Foxa3 7 19013284 to 19023538 10254 - protein coding gene forkhead box A3
Cpgi18429 7 19014489 to 19014736 247 CpG island CpG island 18429
Cpgi18430 7 19023166 to 19025045 1879 CpG island CpG island 18430
Tssr70866 7 19023542 to 19023546 4 - TSS region transcription start site region 70866
Tssr64767 7 19024245 to 19024270 25 + TSS region transcription start site region 64767
Tssr64768 7 19024364 to 19024385 21 + TSS region transcription start site region 64768
Sympk 7 19024377 to 19054618 30241 + protein coding gene symplekin
Tssr64769 7 19024387 to 19024439 52 + TSS region transcription start site region 64769
Tssr70867 7 19037212 to 19037221 9 - TSS region transcription start site region 70867
Tssr64770 7 19037345 to 19037363 18 + TSS region transcription start site region 64770
Tssr64771 7 19052312 to 19052348 36 + TSS region transcription start site region 64771
Cpgi18431 7 19054094 to 19054250 156 CpG island CpG island 18431
Cpgi18432 7 19054612 to 19054888 276 CpG island CpG island 18432
Tssr64772 7 19054662 to 19054674 12 + TSS region transcription start site region 64772
Tssr64773 7 19054683 to 19054707 24 + TSS region transcription start site region 64773
Rsph6a 7 19054690 to 19074447 19757 + protein coding gene radial spoke head 6 homolog A (Chlamydomonas)
Cpgi18433 7 19065292 to 19066148 856 CpG island CpG island 18433
Cpgi18434 7 19075615 to 19077482 1867 CpG island CpG island 18434
Tssr64774 7 19076071 to 19076117 46 + TSS region transcription start site region 64774
Tssr64775 7 19076173 to 19076237 64 + TSS region transcription start site region 64775
Dmwd 7 19076227 to 19082776 6549 + protein coding gene dystrophia myotonica-containing WD repeat motif
Tssr64776 7 19076242 to 19076273 31 + TSS region transcription start site region 64776
Tssr64777 7 19076401 to 19076409 8 + TSS region transcription start site region 64777
Cpgi18435 7 19077835 to 19078126 291 CpG island CpG island 18435
Tssr64778 7 19080656 to 19080666 10 + TSS region transcription start site region 64778
Tssr64779 7 19080706 to 19080723 17 + TSS region transcription start site region 64779
Tssr64780 7 19083842 to 19083894 52 + TSS region transcription start site region 64780
Dmpk 7 19083849 to 19093821 9972 + protein coding gene dystrophia myotonica-protein kinase
Cpgi18436 7 19086049 to 19086382 333 CpG island CpG island 18436
Tssr64781 7 19086272 to 19086333 61 + TSS region transcription start site region 64781
Mir3100 7 19086828 to 19086892 64 + miRNA gene microRNA 3100
Cpgi18437 7 19086901 to 19087069 168 CpG island CpG island 18437
Cpgi18438 7 19091817 to 19092160 343 CpG island CpG island 18438
Cpgi18439 7 19092452 to 19092664 212 CpG island CpG island 18439
Cpgi18440 7 19092940 to 19093620 680 CpG island CpG island 18440
Tssr64782 7 19092970 to 19092982 12 + TSS region transcription start site region 64782
Cpgi18441 7 19093870 to 19096018 2148 CpG island CpG island 18441
Six5 7 19094594 to 19098549 3955 + protein coding gene sine oculis-related homeobox 5
Tssr64783 7 19094615 to 19094633 18 + TSS region transcription start site region 64783
Tssr64784 7 19094714 to 19094739 25 + TSS region transcription start site region 64784
Tssr70868 7 19095556 to 19095572 16 - TSS region transcription start site region 70868
Gm4969 7 19099046 to 19118368 19322 - protein coding gene predicted gene 4969
Sst2 7 119886157 to 18994869 -100891288 QTL susceptibility to tuberculosis 2