Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:18670968-19181028

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psg20 7 18674366 to 18685992 11626 - protein coding gene pregnancy-specific glycoprotein 20
Tssr2098 7 18686184 to 18686190 6 - TSS region transcription start site region 2098
Gm44655 7 18689760 to 18691152 1392 - pseudogene predicted gene 44655
Tssr70848 7 18711219 to 18711223 4 - TSS region transcription start site region 70848
Gm44563 7 18713590 to 18713767 177 + pseudogene predicted gene 44563
Tssr64743 7 18718075 to 18718092 17 + TSS region transcription start site region 64743
Psg22 7 18718090 to 18727248 9158 + protein coding gene pregnancy-specific glycoprotein 22
Tssr64744 7 18718117 to 18718129 12 + TSS region transcription start site region 64744
Tssr64745 7 18718199 to 18718212 13 + TSS region transcription start site region 64745
Tssr2099 7 18727021 to 18727043 22 + TSS region transcription start site region 2099
Tssr70849 7 18735137 to 18735140 3 - TSS region transcription start site region 70849
Gm44564 7 18737447 to 18737626 179 + pseudogene predicted gene 44564
Gm44566 7 18740548 to 18740851 303 + pseudogene predicted gene 44566
Gm44565 7 18742327 to 18743611 1284 + pseudogene predicted gene 44565
Gm24464 7 18745103 to 18745209 106 - snRNA gene predicted gene, 24464
Cpgi18415 7 18746359 to 18746525 166 CpG island CpG island 18415
Tssr70850 7 18746652 to 18746667 15 - TSS region transcription start site region 70850
Gm44561 7 18760858 to 18761121 263 + pseudogene predicted gene 44561
Tssr64746 7 18786282 to 18786323 41 + TSS region transcription start site region 64746
Sycp1-ps1 7 18786332 to 18789099 2767 + pseudogene synaptonemal complex protein 1, pseudogene 1
Tssr64747 7 18787758 to 18787760 2 + TSS region transcription start site region 64747
Psg19 7 18789567 to 18798520 8953 - protein coding gene pregnancy specific glycoprotein 19
Tssr70851 7 18792247 to 18792264 17 - TSS region transcription start site region 70851
Tssr70852 7 18798479 to 18798480 1 - TSS region transcription start site region 70852
Tssr70853 7 18798504 to 18798516 12 - TSS region transcription start site region 70853
Tssr70854 7 18798519 to 18798526 7 - TSS region transcription start site region 70854
Gm19126 7 18801018 to 18801835 817 - pseudogene predicted gene, 19126
Tssr64748 7 18812572 to 18812587 15 + TSS region transcription start site region 64748
Psg17 7 18813937 to 18821591 7654 - protein coding gene pregnancy specific glycoprotein 17
Tssr70855 7 18821598 to 18821612 14 - TSS region transcription start site region 70855
Gm36044 7 18822788 to 18826231 3443 - protein coding gene predicted gene, 36044
Cpgi18416 7 18828178 to 18828568 390 CpG island CpG island 18416
Gm18855 7 18831775 to 18832344 569 + pseudogene predicted gene, 18855
Tssr64749 7 18839954 to 18840006 52 + TSS region transcription start site region 64749
Mill2 7 18839966 to 18865402 25436 + protein coding gene MHC I like leukocyte 2
Tssr64750 7 18840011 to 18840020 9 + TSS region transcription start site region 64750
Tssr64751 7 18844445 to 18844448 3 + TSS region transcription start site region 64751
Cpgi18417 7 18873445 to 18873596 151 CpG island CpG island 18417
Tssr64752 7 18884679 to 18884709 30 + TSS region transcription start site region 64752
Pglyrp1 7 18884690 to 18890438 5748 + protein coding gene peptidoglycan recognition protein 1
D7Dcr1 7 18886582 to 18886707 125 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 1
D7Mit191.2 7 18886706 to 18886826 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 191.2
Tssr70856 7 18890355 to 18890371 16 - TSS region transcription start site region 70856
Tssr70857 7 18890417 to 18890424 7 - TSS region transcription start site region 70857
Ccdc61 7 18890883 to 18910411 19528 - protein coding gene coiled-coil domain containing 61
Cpgi18418 7 18892208 to 18892704 496 CpG island CpG island 18418
Cpgi18419 7 18893037 to 18894318 1281 CpG island CpG island 18419
Cpgi18420 7 18909962 to 18910573 611 CpG island CpG island 18420
Tssr70858 7 18910240 to 18910285 45 - TSS region transcription start site region 70858
Tssr70859 7 18910352 to 18910376 24 - TSS region transcription start site region 70859
Tssr70860 7 18910377 to 18910388 11 - TSS region transcription start site region 70860
Tssr70861 7 18910391 to 18910411 20 - TSS region transcription start site region 70861
Cpgi18421 7 18921246 to 18921451 205 CpG island CpG island 18421
Cpgi18422 7 18925201 to 18926708 1507 CpG island CpG island 18422
Tssr64753 7 18925407 to 18925459 52 + TSS region transcription start site region 64753
Tssr70862 7 18925776 to 18925786 10 - TSS region transcription start site region 70862
Tssr64754 7 18925863 to 18925899 36 + TSS region transcription start site region 64754
Nova2 7 18925888 to 18965319 39431 + protein coding gene neuro-oncological ventral antigen 2
Tssr64755 7 18925917 to 18925924 7 + TSS region transcription start site region 64755
Tssr2100 7 18925968 to 18926028 60 + TSS region transcription start site region 2100
Tssr64756 7 18950460 to 18950472 12 + TSS region transcription start site region 64756
Gm38952 7 18956197 to 18957536 1339 - lncRNA gene predicted gene, 38952
Cpgi18423 7 18957374 to 18958879 1505 CpG island CpG island 18423
Tssr64757 7 18958579 to 18958594 15 + TSS region transcription start site region 64757
Tssr64758 7 18959024 to 18959027 3 + TSS region transcription start site region 64758
Gm26821 7 18962415 to 18965173 2758 - lincRNA gene predicted gene, 26821
Tssr64759 7 18962560 to 18962564 4 + TSS region transcription start site region 64759
Cpgi18424 7 18962796 to 18963674 878 CpG island CpG island 18424
D7Jcs7 7 18965308 to 18965515 207 DNA segment DNA segment, Chr 7, John C. Schimenti 7
Tssr64760 7 18987518 to 18987524 6 + TSS region transcription start site region 64760
Nanos2 7 18987524 to 18988962 1438 + protein coding gene nanos C2HC-type zinc finger 2
Gm45058 7 18987559 to 18988324 765 - antisense lncRNA gene predicted gene 45058
Gm10676 7 18989554 to 18992774 3220 - protein coding gene predicted gene 10676
Cpgi18425 7 18990453 to 18992954 2501 CpG island CpG island 18425
Mypop 7 18991245 to 19001766 10521 + protein coding gene Myb-related transcription factor, partner of profilin
Tssr64761 7 18991289 to 18991314 25 + TSS region transcription start site region 64761
Tssr64762 7 18992400 to 18992422 22 + TSS region transcription start site region 64762
Tssr64763 7 18992425 to 18992428 3 + TSS region transcription start site region 64763
Tssr64764 7 18992429 to 18992439 10 + TSS region transcription start site region 64764
Mypopos 7 18993367 to 19001222 7855 - antisense lncRNA gene Myb-related transcription factor, partner of profilin, opposite strand
D7Mit76 7 18994869 to 18995092 223 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 76
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
Cpgi18426 7 19001140 to 19001293 153 CpG island CpG island 18426
Tssr70863 7 19001160 to 19001174 14 - TSS region transcription start site region 70863
Tssr70864 7 19001184 to 19001239 55 - TSS region transcription start site region 70864
Cpgi18427 7 19003801 to 19005620 1819 CpG island CpG island 18427
Tssr64765 7 19004047 to 19004095 48 + TSS region transcription start site region 64765
Irf2bp1 7 19004065 to 19006763 2698 + protein coding gene interferon regulatory factor 2 binding protein 1
Tssr70865 7 19004233 to 19004266 33 - TSS region transcription start site region 70865
Tssr64766 7 19004359 to 19004377 18 + TSS region transcription start site region 64766
Cpgi18428 7 19012266 to 19012487 221 CpG island CpG island 18428
Foxa3 7 19013284 to 19023538 10254 - protein coding gene forkhead box A3
Cpgi18429 7 19014489 to 19014736 247 CpG island CpG island 18429
Cpgi18430 7 19023166 to 19025045 1879 CpG island CpG island 18430
Tssr70866 7 19023542 to 19023546 4 - TSS region transcription start site region 70866
Tssr64767 7 19024245 to 19024270 25 + TSS region transcription start site region 64767
Tssr64768 7 19024364 to 19024385 21 + TSS region transcription start site region 64768
Sympk 7 19024377 to 19054618 30241 + protein coding gene symplekin
Tssr64769 7 19024387 to 19024439 52 + TSS region transcription start site region 64769
Tssr70867 7 19037212 to 19037221 9 - TSS region transcription start site region 70867
Tssr64770 7 19037345 to 19037363 18 + TSS region transcription start site region 64770
Tssr64771 7 19052312 to 19052348 36 + TSS region transcription start site region 64771
Cpgi18431 7 19054094 to 19054250 156 CpG island CpG island 18431
Cpgi18432 7 19054612 to 19054888 276 CpG island CpG island 18432
Tssr64772 7 19054662 to 19054674 12 + TSS region transcription start site region 64772
Tssr64773 7 19054683 to 19054707 24 + TSS region transcription start site region 64773
Rsph6a 7 19054690 to 19074447 19757 + protein coding gene radial spoke head 6 homolog A (Chlamydomonas)
Cpgi18433 7 19065292 to 19066148 856 CpG island CpG island 18433
Cpgi18434 7 19075615 to 19077482 1867 CpG island CpG island 18434
Tssr64774 7 19076071 to 19076117 46 + TSS region transcription start site region 64774
Tssr64775 7 19076173 to 19076237 64 + TSS region transcription start site region 64775
Dmwd 7 19076227 to 19082776 6549 + protein coding gene dystrophia myotonica-containing WD repeat motif
Tssr64776 7 19076242 to 19076273 31 + TSS region transcription start site region 64776
Tssr64777 7 19076401 to 19076409 8 + TSS region transcription start site region 64777
Cpgi18435 7 19077835 to 19078126 291 CpG island CpG island 18435
Tssr64778 7 19080656 to 19080666 10 + TSS region transcription start site region 64778
Tssr64779 7 19080706 to 19080723 17 + TSS region transcription start site region 64779
Tssr64780 7 19083842 to 19083894 52 + TSS region transcription start site region 64780
Dmpk 7 19083849 to 19093821 9972 + protein coding gene dystrophia myotonica-protein kinase
Cpgi18436 7 19086049 to 19086382 333 CpG island CpG island 18436
Tssr64781 7 19086272 to 19086333 61 + TSS region transcription start site region 64781
Mir3100 7 19086828 to 19086892 64 + miRNA gene microRNA 3100
Cpgi18437 7 19086901 to 19087069 168 CpG island CpG island 18437
Cpgi18438 7 19091817 to 19092160 343 CpG island CpG island 18438
Cpgi18439 7 19092452 to 19092664 212 CpG island CpG island 18439
Cpgi18440 7 19092940 to 19093620 680 CpG island CpG island 18440
Tssr64782 7 19092970 to 19092982 12 + TSS region transcription start site region 64782
Cpgi18441 7 19093870 to 19096018 2148 CpG island CpG island 18441
Six5 7 19094594 to 19098549 3955 + protein coding gene sine oculis-related homeobox 5
Tssr64783 7 19094615 to 19094633 18 + TSS region transcription start site region 64783
Tssr64784 7 19094714 to 19094739 25 + TSS region transcription start site region 64784
Tssr70868 7 19095556 to 19095572 16 - TSS region transcription start site region 70868
Gm4969 7 19099046 to 19118368 19322 - protein coding gene predicted gene 4969
Cpgi18442 7 19117995 to 19118846 851 CpG island CpG island 18442
Tssr70869 7 19118332 to 19118353 21 - TSS region transcription start site region 70869
Tssr70870 7 19118357 to 19118404 47 - TSS region transcription start site region 70870
Tssr64785 7 19119853 to 19119913 60 + TSS region transcription start site region 64785
Fbxo46 7 19119859 to 19138261 18402 + protein coding gene F-box protein 46
Cpgi18443 7 19131421 to 19131871 450 CpG island CpG island 18443
Tssr64786 7 19131686 to 19131709 23 + TSS region transcription start site region 64786
Tssr64787 7 19131712 to 19131729 17 + TSS region transcription start site region 64787
Cpgi18444 7 19136815 to 19136995 180 CpG island CpG island 18444
Tssr64788 7 19137528 to 19137532 4 + TSS region transcription start site region 64788
Tssr70871 7 19140170 to 19140187 17 - TSS region transcription start site region 70871
Qpctl 7 19140217 to 19149196 8979 - protein coding gene glutaminyl-peptide cyclotransferase-like
Cpgi18445 7 19148844 to 19150061 1217 CpG island CpG island 18445
Tssr70872 7 19149189 to 19149273 84 - TSS region transcription start site region 70872
Tssr64789 7 19149810 to 19149844 34 + TSS region transcription start site region 64789
Snrpd2 7 19149838 to 19152726 2888 + protein coding gene small nuclear ribonucleoprotein D2
Gipr 7 19156061 to 19166127 10066 - protein coding gene gastric inhibitory polypeptide receptor
Cpgi18446 7 19157328 to 19157771 443 CpG island CpG island 18446
Cpgi18447 7 19159458 to 19159808 350 CpG island CpG island 18447
Cpgi18448 7 19160322 to 19160540 218 CpG island CpG island 18448
Tssr70873 7 19165133 to 19165154 21 - TSS region transcription start site region 70873
Tssr70874 7 19166119 to 19166134 15 - TSS region transcription start site region 70874
C130070B15Rik 7 19167136 to 19169680 2544 unclassified non-coding RNA gene RIKEN cDNA C130070B15 gene
Tssr70875 7 19169659 to 19169682 23 - TSS region transcription start site region 70875
Cpgi18449 7 19172935 to 19173194 259 CpG island CpG island 18449
Cpgi18450 7 19176294 to 19176810 516 CpG island CpG island 18450
Tssr64790 7 19176416 to 19176440 24 + TSS region transcription start site region 64790
Eml2 7 19176421 to 19206482 30061 + protein coding gene echinoderm microtubule associated protein like 2
Tssr64791 7 19176446 to 19176474 28 + TSS region transcription start site region 64791
Tssr64792 7 19176483 to 19176512 29 + TSS region transcription start site region 64792
Tssr64793 7 19176513 to 19176537 24 + TSS region transcription start site region 64793
Tssr64794 7 19176648 to 19176693 45 + TSS region transcription start site region 64794
Cpgi18451 7 19178125 to 19178294 169 CpG island CpG island 18451
Tssr64795 7 19178203 to 19178239 36 + TSS region transcription start site region 64795
Cpgi18452 7 19178957 to 19179931 974 CpG island CpG island 18452
Tssr64796 7 19178981 to 19179037 56 + TSS region transcription start site region 64796
Sst2 7 119886157 to 18994869 -100891288 QTL susceptibility to tuberculosis 2