Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:17011796-17606529

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp5c 7 17004640 to 17027914 23274 - protein coding gene protein phosphatase 5, catalytic subunit
Tssr70793 7 17018621 to 17018625 4 - TSS region transcription start site region 70793
Tssr70794 7 17024913 to 17024945 32 - TSS region transcription start site region 70794
Cpgi18411 7 17027397 to 17028219 822 CpG island CpG island 18411
Tssr70795 7 17027807 to 17027846 39 - TSS region transcription start site region 70795
Tssr70796 7 17027853 to 17027921 68 - TSS region transcription start site region 70796
Hif3a 7 17031507 to 17062427 30920 - protein coding gene hypoxia inducible factor 3, alpha subunit
Tssr70797 7 17042565 to 17042587 22 - TSS region transcription start site region 70797
Tssr70798 7 17053127 to 17053131 4 - TSS region transcription start site region 70798
Cpgi18412 7 17056066 to 17056674 608 CpG island CpG island 18412
Tssr64675 7 17056273 to 17056306 33 + TSS region transcription start site region 64675
Tssr70799 7 17056669 to 17056696 27 - TSS region transcription start site region 70799
Tssr70800 7 17056704 to 17056717 13 - TSS region transcription start site region 70800
Tssr70801 7 17056828 to 17056874 46 - TSS region transcription start site region 70801
4833404L02Rik 7 17058534 to 17059441 907 + unclassified gene RIKEN cDNA 4833404L02 gene
D7Mit190 7 17059007 to 17059154 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 190
Tssr70802 7 17060885 to 17060922 37 - TSS region transcription start site region 70802
Tssr70803 7 17060924 to 17060936 12 - TSS region transcription start site region 70803
Cpgi18413 7 17062292 to 17062452 160 CpG island CpG island 18413
Tssr70804 7 17062387 to 17062423 36 - TSS region transcription start site region 70804
Psg16 7 17074040 to 17133450 59410 + protein coding gene pregnancy specific glycoprotein 16
Tssr2084 7 17074050 to 17074089 39 + TSS region transcription start site region 2084
Cpgi18414 7 17074327 to 17074609 282 CpG island CpG island 18414
Gm35698 7 17077464 to 17079162 1698 - pseudogene predicted gene, 35698
Gm45219 7 17078191 to 17078655 464 - pseudogene predicted gene 45219
Tssr70805 7 17082327 to 17082350 23 - TSS region transcription start site region 70805
Tssr64676 7 17087934 to 17087961 27 + TSS region transcription start site region 64676
Tssr64677 7 17087974 to 17087977 3 + TSS region transcription start site region 64677
Tssr64678 7 17087987 to 17087995 8 + TSS region transcription start site region 64678
Tssr64679 7 17088032 to 17088049 17 + TSS region transcription start site region 64679
Tssr64680 7 17088059 to 17088082 23 + TSS region transcription start site region 64680
Tssr64681 7 17088652 to 17088655 3 + TSS region transcription start site region 64681
Tssr64682 7 17090451 to 17090459 8 + TSS region transcription start site region 64682
Tssr70806 7 17090485 to 17090525 40 - TSS region transcription start site region 70806
Tssr64683 7 17090519 to 17090522 3 + TSS region transcription start site region 64683
Tssr64684 7 17090566 to 17090575 9 + TSS region transcription start site region 64684
Tssr70807 7 17090591 to 17090604 13 - TSS region transcription start site region 70807
Tssr64685 7 17090638 to 17090646 8 + TSS region transcription start site region 64685
Tssr64686 7 17093673 to 17093686 13 + TSS region transcription start site region 64686
Tssr64687 7 17093695 to 17093698 3 + TSS region transcription start site region 64687
Tssr70808 7 17093871 to 17093903 32 - TSS region transcription start site region 70808
Tssr64688 7 17095006 to 17095011 5 + TSS region transcription start site region 64688
Tssr70809 7 17095050 to 17095061 11 - TSS region transcription start site region 70809
Tssr64689 7 17095084 to 17095095 11 + TSS region transcription start site region 64689
Tssr70810 7 17095086 to 17095091 5 - TSS region transcription start site region 70810
Tssr70811 7 17098513 to 17098521 8 - TSS region transcription start site region 70811
Gm7287 7 17138874 to 17139472 598 - pseudogene predicted gene 7287
Tssr64690 7 17150191 to 17150198 7 + TSS region transcription start site region 64690
Ceacam3 7 17150198 to 17163754 13556 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 3
Tssr64691 7 17150210 to 17150236 26 + TSS region transcription start site region 64691
Tssr64692 7 17150247 to 17150252 5 + TSS region transcription start site region 64692
Tssr64693 7 17150270 to 17150275 5 + TSS region transcription start site region 64693
Tssr64694 7 17150365 to 17150374 9 + TSS region transcription start site region 64694
D7Jcs3 7 17155180 to 17155378 198 DNA segment DNA segment, Chr 7, John C. Schimenti 3
Tssr64695 7 17163259 to 17163283 24 + TSS region transcription start site region 64695
Tssr64696 7 17163363 to 17163372 9 + TSS region transcription start site region 64696
Tssr64697 7 17163693 to 17163702 9 + TSS region transcription start site region 64697
Tssr64698 7 17163708 to 17163720 12 + TSS region transcription start site region 64698
Tssr64699 7 17163956 to 17163961 5 + TSS region transcription start site region 64699
Gm45032 7 17173596 to 17174586 990 + pseudogene predicted gene 45032
Tssr64700 7 17203448 to 17203457 9 + TSS region transcription start site region 64700
Tssr64701 7 17203469 to 17203485 16 + TSS region transcription start site region 64701
Psg29 7 17203477 to 17215756 12279 + protein coding gene pregnancy-specific glycoprotein 29
Tssr64702 7 17203493 to 17203502 9 + TSS region transcription start site region 64702
Tssr64703 7 17203535 to 17203541 6 + TSS region transcription start site region 64703
Tssr64704 7 17213337 to 17213345 8 + TSS region transcription start site region 64704
Gm32772 7 17287647 to 17366538 78891 - lincRNA gene predicted gene, 32772
Gm42373 7 17306796 to 17311529 4733 + lncRNA gene predicted gene, 42373
Gm32846 7 17392760 to 17424099 31339 - lincRNA gene predicted gene, 32846
Gm39557 7 17415978 to 17418408 2430 + protein coding gene predicted gene, 39557
Gm33109 7 17580752 to 17584370 3618 - lncRNA gene predicted gene, 33109