Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16980847-18391313

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18409 7 16983049 to 16983567 518 CpG island CpG island 18409
Tssr64666 7 16983065 to 16983150 85 + TSS region transcription start site region 64666
Tssr64667 7 16983173 to 16983183 10 + TSS region transcription start site region 64667
Gm42372 7 16983477 to 16988146 4669 + protein coding gene predicted gene, 42372
Tssr64668 7 16986914 to 16986937 23 + TSS region transcription start site region 64668
Tssr64669 7 16986960 to 16986988 28 + TSS region transcription start site region 64669
Tssr64670 7 16987024 to 16987063 39 + TSS region transcription start site region 64670
Tssr64671 7 16987197 to 16987217 20 + TSS region transcription start site region 64671
Tssr64672 7 16993798 to 16993812 14 + TSS region transcription start site region 64672
Tssr64673 7 16993865 to 16993926 61 + TSS region transcription start site region 64673
Tssr64674 7 16993977 to 16994039 62 + TSS region transcription start site region 64674
Cpgi18410 7 16993991 to 16995116 1125 CpG island CpG island 18410
Ccdc8 7 16994588 to 16996645 2057 + protein coding gene coiled-coil domain containing 8
D7Jcs2 7 16998665 to 16998952 287 DNA segment DNA segment, Chr 7, John C. Schimenti 2
Ppp5c 7 17004640 to 17027914 23274 - protein coding gene protein phosphatase 5, catalytic subunit
Tssr70793 7 17018621 to 17018625 4 - TSS region transcription start site region 70793
Tssr70794 7 17024913 to 17024945 32 - TSS region transcription start site region 70794
Cpgi18411 7 17027397 to 17028219 822 CpG island CpG island 18411
Tssr70795 7 17027807 to 17027846 39 - TSS region transcription start site region 70795
Tssr70796 7 17027853 to 17027921 68 - TSS region transcription start site region 70796
Hif3a 7 17031507 to 17062427 30920 - protein coding gene hypoxia inducible factor 3, alpha subunit
Tssr70797 7 17042565 to 17042587 22 - TSS region transcription start site region 70797
Tssr70798 7 17053127 to 17053131 4 - TSS region transcription start site region 70798
Cpgi18412 7 17056066 to 17056674 608 CpG island CpG island 18412
Tssr64675 7 17056273 to 17056306 33 + TSS region transcription start site region 64675
Tssr70799 7 17056669 to 17056696 27 - TSS region transcription start site region 70799
Tssr70800 7 17056704 to 17056717 13 - TSS region transcription start site region 70800
Tssr70801 7 17056828 to 17056874 46 - TSS region transcription start site region 70801
4833404L02Rik 7 17058534 to 17059441 907 + unclassified gene RIKEN cDNA 4833404L02 gene
D7Mit190 7 17059007 to 17059154 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 190
Tssr70802 7 17060885 to 17060922 37 - TSS region transcription start site region 70802
Tssr70803 7 17060924 to 17060936 12 - TSS region transcription start site region 70803
Cpgi18413 7 17062292 to 17062452 160 CpG island CpG island 18413
Tssr70804 7 17062387 to 17062423 36 - TSS region transcription start site region 70804
Psg16 7 17074040 to 17133450 59410 + protein coding gene pregnancy specific glycoprotein 16
Tssr2084 7 17074050 to 17074089 39 + TSS region transcription start site region 2084
Cpgi18414 7 17074327 to 17074609 282 CpG island CpG island 18414
Gm35698 7 17077464 to 17079162 1698 - pseudogene predicted gene, 35698
Gm45219 7 17078191 to 17078655 464 - pseudogene predicted gene 45219
Tssr70805 7 17082327 to 17082350 23 - TSS region transcription start site region 70805
Tssr64676 7 17087934 to 17087961 27 + TSS region transcription start site region 64676
Tssr64677 7 17087974 to 17087977 3 + TSS region transcription start site region 64677
Tssr64678 7 17087987 to 17087995 8 + TSS region transcription start site region 64678
Tssr64679 7 17088032 to 17088049 17 + TSS region transcription start site region 64679
Tssr64680 7 17088059 to 17088082 23 + TSS region transcription start site region 64680
Tssr64681 7 17088652 to 17088655 3 + TSS region transcription start site region 64681
Tssr64682 7 17090451 to 17090459 8 + TSS region transcription start site region 64682
Tssr70806 7 17090485 to 17090525 40 - TSS region transcription start site region 70806
Tssr64683 7 17090519 to 17090522 3 + TSS region transcription start site region 64683
Tssr64684 7 17090566 to 17090575 9 + TSS region transcription start site region 64684
Tssr70807 7 17090591 to 17090604 13 - TSS region transcription start site region 70807
Tssr64685 7 17090638 to 17090646 8 + TSS region transcription start site region 64685
Tssr64686 7 17093673 to 17093686 13 + TSS region transcription start site region 64686
Tssr64687 7 17093695 to 17093698 3 + TSS region transcription start site region 64687
Tssr70808 7 17093871 to 17093903 32 - TSS region transcription start site region 70808
Tssr64688 7 17095006 to 17095011 5 + TSS region transcription start site region 64688
Tssr70809 7 17095050 to 17095061 11 - TSS region transcription start site region 70809
Tssr64689 7 17095084 to 17095095 11 + TSS region transcription start site region 64689
Tssr70810 7 17095086 to 17095091 5 - TSS region transcription start site region 70810
Tssr70811 7 17098513 to 17098521 8 - TSS region transcription start site region 70811
Gm7287 7 17138874 to 17139472 598 - pseudogene predicted gene 7287
Tssr64690 7 17150191 to 17150198 7 + TSS region transcription start site region 64690
Ceacam3 7 17150198 to 17163754 13556 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 3
Tssr64691 7 17150210 to 17150236 26 + TSS region transcription start site region 64691
Tssr64692 7 17150247 to 17150252 5 + TSS region transcription start site region 64692
Tssr64693 7 17150270 to 17150275 5 + TSS region transcription start site region 64693
Tssr64694 7 17150365 to 17150374 9 + TSS region transcription start site region 64694
D7Jcs3 7 17155180 to 17155378 198 DNA segment DNA segment, Chr 7, John C. Schimenti 3
Tssr64695 7 17163259 to 17163283 24 + TSS region transcription start site region 64695
Tssr64696 7 17163363 to 17163372 9 + TSS region transcription start site region 64696
Tssr64697 7 17163693 to 17163702 9 + TSS region transcription start site region 64697
Tssr64698 7 17163708 to 17163720 12 + TSS region transcription start site region 64698
Tssr64699 7 17163956 to 17163961 5 + TSS region transcription start site region 64699
Gm45032 7 17173596 to 17174586 990 + pseudogene predicted gene 45032
Tssr64700 7 17203448 to 17203457 9 + TSS region transcription start site region 64700
Tssr64701 7 17203469 to 17203485 16 + TSS region transcription start site region 64701
Psg29 7 17203477 to 17215756 12279 + protein coding gene pregnancy-specific glycoprotein 29
Tssr64702 7 17203493 to 17203502 9 + TSS region transcription start site region 64702
Tssr64703 7 17203535 to 17203541 6 + TSS region transcription start site region 64703
Tssr64704 7 17213337 to 17213345 8 + TSS region transcription start site region 64704
Gm32772 7 17287647 to 17366538 78891 - lincRNA gene predicted gene, 32772
Gm42373 7 17306796 to 17311529 4733 + lncRNA gene predicted gene, 42373
Gm32846 7 17392760 to 17424099 31339 - lincRNA gene predicted gene, 32846
Gm39557 7 17415978 to 17418408 2430 + protein coding gene predicted gene, 39557
Gm33109 7 17580752 to 17584370 3618 - lncRNA gene predicted gene, 33109
Gm24520 7 17610766 to 17610875 109 + miRNA gene predicted gene, 24520
Gm25068 7 17618170 to 17618279 109 + miRNA gene predicted gene, 25068
Gm5418 7 17618499 to 17619026 527 + pseudogene predicted gene 5418
Gm9519 7 17637479 to 17650345 12866 - pseudogene predicted gene 9519
Tssr70812 7 17655928 to 17655938 10 - TSS region transcription start site region 70812
Gm45973 7 17662403 to 17666085 3682 - pseudogene predicted gene, 45973
Tssr64705 7 17672235 to 17672259 24 + TSS region transcription start site region 64705
Tssr64706 7 17672268 to 17672279 11 + TSS region transcription start site region 64706
Tssr64707 7 17672290 to 17672301 11 + TSS region transcription start site region 64707
Tssr64708 7 17672307 to 17672314 7 + TSS region transcription start site region 64708
Psg-ps1 7 17672313 to 17682060 9747 + pseudogene pregnancy specific glycoprotein, pseudogene 1
Tssr64709 7 17672346 to 17672349 3 + TSS region transcription start site region 64709
Gm45150 7 17685847 to 17686313 466 - pseudogene predicted gene 45150
Tssr70813 7 17710973 to 17710982 9 - TSS region transcription start site region 70813
Tssr64710 7 17713195 to 17713201 6 + TSS region transcription start site region 64710
Tssr64711 7 17713233 to 17713262 29 + TSS region transcription start site region 64711
Ceacam5 7 17713238 to 17761132 47894 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 5
Tssr64712 7 17715052 to 17715066 14 + TSS region transcription start site region 64712
Tssr64713 7 17716229 to 17716232 3 + TSS region transcription start site region 64713
Tssr2085 7 17750547 to 17750551 4 + TSS region transcription start site region 2085
Gm6065 7 17792574 to 17793065 491 + pseudogene predicted gene 6065
Gm45149 7 17797825 to 17799996 2171 - unclassified gene predicted gene 45149
Tssr64714 7 17812676 to 17812688 12 + TSS region transcription start site region 64714
Ceacam14 7 17812682 to 17815627 2945 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 14
Tssr64715 7 17812703 to 17812706 3 + TSS region transcription start site region 64715
Tssr64716 7 17814069 to 17814078 9 + TSS region transcription start site region 64716
Tssr64717 7 17871759 to 17871771 12 + TSS region transcription start site region 64717
Gm5155 7 17871767 to 17919010 47243 + pseudogene predicted gene 5155
Tssr64718 7 17972000 to 17972002 2 + TSS region transcription start site region 64718
Tssr64719 7 17972117 to 17972128 11 + TSS region transcription start site region 64719
Tssr64720 7 17972159 to 17972173 14 + TSS region transcription start site region 64720
Ceacam11 7 17972167 to 17978556 6389 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 11
Tssr64721 7 17972221 to 17972232 11 + TSS region transcription start site region 64721
Tssr64722 7 17973367 to 17973380 13 + TSS region transcription start site region 64722
Tssr64723 7 17973435 to 17973442 7 + TSS region transcription start site region 64723
Tssr64724 7 17973561 to 17973570 9 + TSS region transcription start site region 64724
Tssr70814 7 17973630 to 17973671 41 - TSS region transcription start site region 70814
Tssr64725 7 17975326 to 17975331 5 + TSS region transcription start site region 64725
Tssr64726 7 17975587 to 17975598 11 + TSS region transcription start site region 64726
Gm18125 7 17989805 to 17990334 529 - pseudogene predicted gene, 18125
Tssr64727 7 18009881 to 18009895 14 + TSS region transcription start site region 64727
Ceacam13 7 18009889 to 18019220 9331 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 13
Tssr2086 7 18009902 to 18009918 16 + TSS region transcription start site region 2086
Tssr64728 7 18011290 to 18011308 18 + TSS region transcription start site region 64728
Gm22414 7 18017252 to 18017352 100 - miRNA gene predicted gene, 22414
Gm5322 7 18038476 to 18039174 698 + pseudogene predicted gene 5322
Tssr2087 7 18057987 to 18057988 1 + TSS region transcription start site region 2087
Tssr2088 7 18065924 to 18065933 9 + TSS region transcription start site region 2088
Ceacam12 7 18065929 to 18077986 12057 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 12
Tssr2089 7 18065938 to 18065947 9 + TSS region transcription start site region 2089
Tssr2090 7 18065951 to 18065960 9 + TSS region transcription start site region 2090
Tssr64729 7 18065972 to 18065987 15 + TSS region transcription start site region 64729
Tssr64730 7 18065997 to 18066008 11 + TSS region transcription start site region 64730
Tssr2091 7 18066010 to 18066018 8 + TSS region transcription start site region 2091
Tssr64731 7 18067171 to 18067190 19 + TSS region transcription start site region 64731
Tssr64732 7 18067239 to 18067243 4 + TSS region transcription start site region 64732
Tssr70815 7 18069389 to 18069397 8 - TSS region transcription start site region 70815
Gm44613 7 18074016 to 18186952 112936 - antisense lncRNA gene predicted gene 44613
Tssr64733 7 18176470 to 18176475 5 + TSS region transcription start site region 64733
Igfl3 7 18176494 to 18181862 5368 + protein coding gene IGF-like family member 3
Gm9521 7 18229777 to 18231292 1515 + pseudogene predicted gene 9521
D7Jcs5 7 18238006 to 18238202 196 DNA segment DNA segment, Chr 7, John C. Schimenti 5
Tssr64734 7 18245202 to 18245216 14 + TSS region transcription start site region 64734
Tssr64735 7 18245235 to 18245236 1 + TSS region transcription start site region 64735
Mill1 7 18245347 to 18266092 20745 + protein coding gene MHC I like leukocyte 1
Tssr64736 7 18245385 to 18245402 17 + TSS region transcription start site region 64736
Gm33626 7 18318718 to 18321091 2373 - lncRNA gene predicted gene, 33626
Psg18 7 18345744 to 18355039 9295 - protein coding gene pregnancy specific glycoprotein 18
Tssr70816 7 18345798 to 18345814 16 - TSS region transcription start site region 70816
Tssr70817 7 18354981 to 18355016 35 - TSS region transcription start site region 70817
Gm5997 7 18375547 to 18377523 1976 - pseudogene predicted gene 5997