Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16954640-17077914

41 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pnmal1	7	16959679 to 16964607	4928	+	protein coding gene	PNMA-like 1
Tssr64664	7	16959714 to 16959800	86	+	TSS region	transcription start site region 64664
Tssr64665	7	16959821 to 16959832	11	+	TSS region	transcription start site region 64665
Cpgi18409	7	16983049 to 16983567	518		CpG island	CpG island 18409
Tssr64666	7	16983065 to 16983150	85	+	TSS region	transcription start site region 64666
Tssr64667	7	16983173 to 16983183	10	+	TSS region	transcription start site region 64667
Gm42372	7	16983477 to 16988146	4669	+	protein coding gene	predicted gene, 42372
Tssr64668	7	16986914 to 16986937	23	+	TSS region	transcription start site region 64668
Tssr64669	7	16986960 to 16986988	28	+	TSS region	transcription start site region 64669
Tssr64670	7	16987024 to 16987063	39	+	TSS region	transcription start site region 64670
Tssr64671	7	16987197 to 16987217	20	+	TSS region	transcription start site region 64671
Tssr64672	7	16993798 to 16993812	14	+	TSS region	transcription start site region 64672
Tssr64673	7	16993865 to 16993926	61	+	TSS region	transcription start site region 64673
Tssr64674	7	16993977 to 16994039	62	+	TSS region	transcription start site region 64674
Cpgi18410	7	16993991 to 16995116	1125		CpG island	CpG island 18410
Ccdc8	7	16994588 to 16996645	2057	+	protein coding gene	coiled-coil domain containing 8
D7Jcs2	7	16998665 to 16998952	287		DNA segment	DNA segment, Chr 7, John C. Schimenti 2
Ppp5c	7	17004640 to 17027914	23274	-	protein coding gene	protein phosphatase 5, catalytic subunit
Tssr70793	7	17018621 to 17018625	4	-	TSS region	transcription start site region 70793
Tssr70794	7	17024913 to 17024945	32	-	TSS region	transcription start site region 70794
Cpgi18411	7	17027397 to 17028219	822		CpG island	CpG island 18411
Tssr70795	7	17027807 to 17027846	39	-	TSS region	transcription start site region 70795
Tssr70796	7	17027853 to 17027921	68	-	TSS region	transcription start site region 70796
Hif3a	7	17031507 to 17062427	30920	-	protein coding gene	hypoxia inducible factor 3, alpha subunit
Tssr70797	7	17042565 to 17042587	22	-	TSS region	transcription start site region 70797
Tssr70798	7	17053127 to 17053131	4	-	TSS region	transcription start site region 70798
Cpgi18412	7	17056066 to 17056674	608		CpG island	CpG island 18412
Tssr64675	7	17056273 to 17056306	33	+	TSS region	transcription start site region 64675
Tssr70799	7	17056669 to 17056696	27	-	TSS region	transcription start site region 70799
Tssr70800	7	17056704 to 17056717	13	-	TSS region	transcription start site region 70800
Tssr70801	7	17056828 to 17056874	46	-	TSS region	transcription start site region 70801
4833404L02Rik	7	17058534 to 17059441	907	+	unclassified gene	RIKEN cDNA 4833404L02 gene
D7Mit190	7	17059007 to 17059154	147		DNA segment	DNA segment, Chr 7, Massachusetts Institute of Technology 190
Tssr70802	7	17060885 to 17060922	37	-	TSS region	transcription start site region 70802
Tssr70803	7	17060924 to 17060936	12	-	TSS region	transcription start site region 70803
Cpgi18413	7	17062292 to 17062452	160		CpG island	CpG island 18413
Tssr70804	7	17062387 to 17062423	36	-	TSS region	transcription start site region 70804
Psg16	7	17074040 to 17133450	59410	+	protein coding gene	pregnancy specific glycoprotein 16
Tssr2084	7	17074050 to 17074089	39	+	TSS region	transcription start site region 2084
Cpgi18414	7	17074327 to 17074609	282		CpG island	CpG island 18414
Gm35698	7	17077464 to 17079162	1698	-	pseudogene	predicted gene, 35698