Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16922327-17242350

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Calm3 7 16915379 to 16924032 8653 - protein coding gene calmodulin 3
Gm45972 7 16921731 to 16923538 1807 + lncRNA gene predicted gene, 45972
Cpgi18405 7 16923314 to 16924654 1340 CpG island CpG island 18405
Tssr70789 7 16923875 to 16923891 16 - TSS region transcription start site region 70789
Tssr70790 7 16923901 to 16924026 125 - TSS region transcription start site region 70790
Tssr70791 7 16924132 to 16924137 5 - TSS region transcription start site region 70791
Gm32630 7 16930314 to 16932609 2295 - lncRNA gene predicted gene, 32630
Cpgi18406 7 16944454 to 16945765 1311 CpG island CpG island 18406
Tssr64660 7 16944645 to 16944720 75 + TSS region transcription start site region 64660
Pnmal2 7 16944682 to 16948828 4146 + protein coding gene PNMA-like 2
Tssr70792 7 16945649 to 16945657 8 - TSS region transcription start site region 70792
Tssr64661 7 16945694 to 16945768 74 + TSS region transcription start site region 64661
Cpgi18407 7 16946260 to 16947703 1443 CpG island CpG island 18407
Cpgi18408 7 16949951 to 16950400 449 CpG island CpG island 18408
Tssr64662 7 16950128 to 16950139 11 + TSS region transcription start site region 64662
Tssr64663 7 16950157 to 16950164 7 + TSS region transcription start site region 64663
D7Jcs1 7 16950820 to 16951114 294 DNA segment DNA segment, Chr 7, John C. Schimenti 1
Gm25815 7 16953395 to 16953501 106 - snRNA gene predicted gene, 25815
Pnmal1 7 16959679 to 16964607 4928 + protein coding gene PNMA-like 1
Tssr64664 7 16959714 to 16959800 86 + TSS region transcription start site region 64664
Tssr64665 7 16959821 to 16959832 11 + TSS region transcription start site region 64665
Cpgi18409 7 16983049 to 16983567 518 CpG island CpG island 18409
Tssr64666 7 16983065 to 16983150 85 + TSS region transcription start site region 64666
Tssr64667 7 16983173 to 16983183 10 + TSS region transcription start site region 64667
Gm42372 7 16983477 to 16988146 4669 + protein coding gene predicted gene, 42372
Tssr64668 7 16986914 to 16986937 23 + TSS region transcription start site region 64668
Tssr64669 7 16986960 to 16986988 28 + TSS region transcription start site region 64669
Tssr64670 7 16987024 to 16987063 39 + TSS region transcription start site region 64670
Tssr64671 7 16987197 to 16987217 20 + TSS region transcription start site region 64671
Tssr64672 7 16993798 to 16993812 14 + TSS region transcription start site region 64672
Tssr64673 7 16993865 to 16993926 61 + TSS region transcription start site region 64673
Tssr64674 7 16993977 to 16994039 62 + TSS region transcription start site region 64674
Cpgi18410 7 16993991 to 16995116 1125 CpG island CpG island 18410
Ccdc8 7 16994588 to 16996645 2057 + protein coding gene coiled-coil domain containing 8
D7Jcs2 7 16998665 to 16998952 287 DNA segment DNA segment, Chr 7, John C. Schimenti 2
Ppp5c 7 17004640 to 17027914 23274 - protein coding gene protein phosphatase 5, catalytic subunit
Tssr70793 7 17018621 to 17018625 4 - TSS region transcription start site region 70793
Tssr70794 7 17024913 to 17024945 32 - TSS region transcription start site region 70794
Cpgi18411 7 17027397 to 17028219 822 CpG island CpG island 18411
Tssr70795 7 17027807 to 17027846 39 - TSS region transcription start site region 70795
Tssr70796 7 17027853 to 17027921 68 - TSS region transcription start site region 70796
Hif3a 7 17031507 to 17062427 30920 - protein coding gene hypoxia inducible factor 3, alpha subunit
Tssr70797 7 17042565 to 17042587 22 - TSS region transcription start site region 70797
Tssr70798 7 17053127 to 17053131 4 - TSS region transcription start site region 70798
Cpgi18412 7 17056066 to 17056674 608 CpG island CpG island 18412
Tssr64675 7 17056273 to 17056306 33 + TSS region transcription start site region 64675
Tssr70799 7 17056669 to 17056696 27 - TSS region transcription start site region 70799
Tssr70800 7 17056704 to 17056717 13 - TSS region transcription start site region 70800
Tssr70801 7 17056828 to 17056874 46 - TSS region transcription start site region 70801
4833404L02Rik 7 17058534 to 17059441 907 + unclassified gene RIKEN cDNA 4833404L02 gene
D7Mit190 7 17059007 to 17059154 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 190
Tssr70802 7 17060885 to 17060922 37 - TSS region transcription start site region 70802
Tssr70803 7 17060924 to 17060936 12 - TSS region transcription start site region 70803
Cpgi18413 7 17062292 to 17062452 160 CpG island CpG island 18413
Tssr70804 7 17062387 to 17062423 36 - TSS region transcription start site region 70804
Psg16 7 17074040 to 17133450 59410 + protein coding gene pregnancy specific glycoprotein 16
Tssr2084 7 17074050 to 17074089 39 + TSS region transcription start site region 2084
Cpgi18414 7 17074327 to 17074609 282 CpG island CpG island 18414
Gm35698 7 17077464 to 17079162 1698 - pseudogene predicted gene, 35698
Gm45219 7 17078191 to 17078655 464 - pseudogene predicted gene 45219
Tssr70805 7 17082327 to 17082350 23 - TSS region transcription start site region 70805
Tssr64676 7 17087934 to 17087961 27 + TSS region transcription start site region 64676
Tssr64677 7 17087974 to 17087977 3 + TSS region transcription start site region 64677
Tssr64678 7 17087987 to 17087995 8 + TSS region transcription start site region 64678
Tssr64679 7 17088032 to 17088049 17 + TSS region transcription start site region 64679
Tssr64680 7 17088059 to 17088082 23 + TSS region transcription start site region 64680
Tssr64681 7 17088652 to 17088655 3 + TSS region transcription start site region 64681
Tssr64682 7 17090451 to 17090459 8 + TSS region transcription start site region 64682
Tssr70806 7 17090485 to 17090525 40 - TSS region transcription start site region 70806
Tssr64683 7 17090519 to 17090522 3 + TSS region transcription start site region 64683
Tssr64684 7 17090566 to 17090575 9 + TSS region transcription start site region 64684
Tssr70807 7 17090591 to 17090604 13 - TSS region transcription start site region 70807
Tssr64685 7 17090638 to 17090646 8 + TSS region transcription start site region 64685
Tssr64686 7 17093673 to 17093686 13 + TSS region transcription start site region 64686
Tssr64687 7 17093695 to 17093698 3 + TSS region transcription start site region 64687
Tssr70808 7 17093871 to 17093903 32 - TSS region transcription start site region 70808
Tssr64688 7 17095006 to 17095011 5 + TSS region transcription start site region 64688
Tssr70809 7 17095050 to 17095061 11 - TSS region transcription start site region 70809
Tssr64689 7 17095084 to 17095095 11 + TSS region transcription start site region 64689
Tssr70810 7 17095086 to 17095091 5 - TSS region transcription start site region 70810
Tssr70811 7 17098513 to 17098521 8 - TSS region transcription start site region 70811
Gm7287 7 17138874 to 17139472 598 - pseudogene predicted gene 7287
Tssr64690 7 17150191 to 17150198 7 + TSS region transcription start site region 64690
Ceacam3 7 17150198 to 17163754 13556 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 3
Tssr64691 7 17150210 to 17150236 26 + TSS region transcription start site region 64691
Tssr64692 7 17150247 to 17150252 5 + TSS region transcription start site region 64692
Tssr64693 7 17150270 to 17150275 5 + TSS region transcription start site region 64693
Tssr64694 7 17150365 to 17150374 9 + TSS region transcription start site region 64694
D7Jcs3 7 17155180 to 17155378 198 DNA segment DNA segment, Chr 7, John C. Schimenti 3
Tssr64695 7 17163259 to 17163283 24 + TSS region transcription start site region 64695
Tssr64696 7 17163363 to 17163372 9 + TSS region transcription start site region 64696
Tssr64697 7 17163693 to 17163702 9 + TSS region transcription start site region 64697
Tssr64698 7 17163708 to 17163720 12 + TSS region transcription start site region 64698
Tssr64699 7 17163956 to 17163961 5 + TSS region transcription start site region 64699
Gm45032 7 17173596 to 17174586 990 + pseudogene predicted gene 45032
Tssr64700 7 17203448 to 17203457 9 + TSS region transcription start site region 64700
Tssr64701 7 17203469 to 17203485 16 + TSS region transcription start site region 64701
Psg29 7 17203477 to 17215756 12279 + protein coding gene pregnancy-specific glycoprotein 29
Tssr64702 7 17203493 to 17203502 9 + TSS region transcription start site region 64702
Tssr64703 7 17203535 to 17203541 6 + TSS region transcription start site region 64703
Tssr64704 7 17213337 to 17213345 8 + TSS region transcription start site region 64704