Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16912197-17062217

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Calm3 7 16915379 to 16924032 8653 - protein coding gene calmodulin 3
Tssr70774 7 16915460 to 16915476 16 - TSS region transcription start site region 70774
Tssr70775 7 16915591 to 16915602 11 - TSS region transcription start site region 70775
Tssr70776 7 16915652 to 16915672 20 - TSS region transcription start site region 70776
Tssr70777 7 16915797 to 16915813 16 - TSS region transcription start site region 70777
Cpgi18404 7 16915922 to 16916338 416 CpG island CpG island 18404
Tssr70778 7 16916008 to 16916035 27 - TSS region transcription start site region 70778
Tssr70779 7 16916040 to 16916060 20 - TSS region transcription start site region 70779
Tssr70780 7 16916339 to 16916353 14 - TSS region transcription start site region 70780
Tssr70781 7 16916357 to 16916375 18 - TSS region transcription start site region 70781
Tssr70782 7 16916728 to 16916836 108 - TSS region transcription start site region 70782
Tssr70783 7 16916886 to 16916915 29 - TSS region transcription start site region 70783
Tssr70784 7 16916918 to 16916938 20 - TSS region transcription start site region 70784
Tssr70785 7 16917184 to 16917212 28 - TSS region transcription start site region 70785
Tssr70786 7 16917632 to 16917647 15 - TSS region transcription start site region 70786
Tssr70787 7 16917680 to 16917699 19 - TSS region transcription start site region 70787
Tssr70788 7 16917713 to 16917728 15 - TSS region transcription start site region 70788
Gm45972 7 16921731 to 16923538 1807 + lncRNA gene predicted gene, 45972
Tssr64659 7 16922049 to 16922064 15 + TSS region transcription start site region 64659
Cpgi18405 7 16923314 to 16924654 1340 CpG island CpG island 18405
Tssr70789 7 16923875 to 16923891 16 - TSS region transcription start site region 70789
Tssr70790 7 16923901 to 16924026 125 - TSS region transcription start site region 70790
Tssr70791 7 16924132 to 16924137 5 - TSS region transcription start site region 70791
Gm32630 7 16930314 to 16932609 2295 - lncRNA gene predicted gene, 32630
Cpgi18406 7 16944454 to 16945765 1311 CpG island CpG island 18406
Tssr64660 7 16944645 to 16944720 75 + TSS region transcription start site region 64660
Pnmal2 7 16944682 to 16948828 4146 + protein coding gene PNMA-like 2
Tssr70792 7 16945649 to 16945657 8 - TSS region transcription start site region 70792
Tssr64661 7 16945694 to 16945768 74 + TSS region transcription start site region 64661
Cpgi18407 7 16946260 to 16947703 1443 CpG island CpG island 18407
Cpgi18408 7 16949951 to 16950400 449 CpG island CpG island 18408
Tssr64662 7 16950128 to 16950139 11 + TSS region transcription start site region 64662
Tssr64663 7 16950157 to 16950164 7 + TSS region transcription start site region 64663
D7Jcs1 7 16950820 to 16951114 294 DNA segment DNA segment, Chr 7, John C. Schimenti 1
Gm25815 7 16953395 to 16953501 106 - snRNA gene predicted gene, 25815
Pnmal1 7 16959679 to 16964607 4928 + protein coding gene PNMA-like 1
Tssr64664 7 16959714 to 16959800 86 + TSS region transcription start site region 64664
Tssr64665 7 16959821 to 16959832 11 + TSS region transcription start site region 64665
Cpgi18409 7 16983049 to 16983567 518 CpG island CpG island 18409
Tssr64666 7 16983065 to 16983150 85 + TSS region transcription start site region 64666
Tssr64667 7 16983173 to 16983183 10 + TSS region transcription start site region 64667
Gm42372 7 16983477 to 16988146 4669 + protein coding gene predicted gene, 42372
Tssr64668 7 16986914 to 16986937 23 + TSS region transcription start site region 64668
Tssr64669 7 16986960 to 16986988 28 + TSS region transcription start site region 64669
Tssr64670 7 16987024 to 16987063 39 + TSS region transcription start site region 64670
Tssr64671 7 16987197 to 16987217 20 + TSS region transcription start site region 64671
Tssr64672 7 16993798 to 16993812 14 + TSS region transcription start site region 64672
Tssr64673 7 16993865 to 16993926 61 + TSS region transcription start site region 64673
Tssr64674 7 16993977 to 16994039 62 + TSS region transcription start site region 64674
Cpgi18410 7 16993991 to 16995116 1125 CpG island CpG island 18410
Ccdc8 7 16994588 to 16996645 2057 + protein coding gene coiled-coil domain containing 8
D7Jcs2 7 16998665 to 16998952 287 DNA segment DNA segment, Chr 7, John C. Schimenti 2
Ppp5c 7 17004640 to 17027914 23274 - protein coding gene protein phosphatase 5, catalytic subunit
Tssr70793 7 17018621 to 17018625 4 - TSS region transcription start site region 70793
Tssr70794 7 17024913 to 17024945 32 - TSS region transcription start site region 70794
Cpgi18411 7 17027397 to 17028219 822 CpG island CpG island 18411
Tssr70795 7 17027807 to 17027846 39 - TSS region transcription start site region 70795
Tssr70796 7 17027853 to 17027921 68 - TSS region transcription start site region 70796
Hif3a 7 17031507 to 17062427 30920 - protein coding gene hypoxia inducible factor 3, alpha subunit
Tssr70797 7 17042565 to 17042587 22 - TSS region transcription start site region 70797
Tssr70798 7 17053127 to 17053131 4 - TSS region transcription start site region 70798
Cpgi18412 7 17056066 to 17056674 608 CpG island CpG island 18412
Tssr64675 7 17056273 to 17056306 33 + TSS region transcription start site region 64675
Tssr70799 7 17056669 to 17056696 27 - TSS region transcription start site region 70799
Tssr70800 7 17056704 to 17056717 13 - TSS region transcription start site region 70800
Tssr70801 7 17056828 to 17056874 46 - TSS region transcription start site region 70801
4833404L02Rik 7 17058534 to 17059441 907 + unclassified gene RIKEN cDNA 4833404L02 gene
D7Mit190 7 17059007 to 17059154 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 190
Tssr70802 7 17060885 to 17060922 37 - TSS region transcription start site region 70802
Tssr70803 7 17060924 to 17060936 12 - TSS region transcription start site region 70803