Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16736339-17096353

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18386 7 16738270 to 16738757 487 CpG island CpG island 18386
Ap2s1 7 16738410 to 16749294 10884 + protein coding gene adaptor-related protein complex 2, sigma 1 subunit
Tssr64621 7 16738436 to 16738476 40 + TSS region transcription start site region 64621
Tssr64622 7 16749092 to 16749104 12 + TSS region transcription start site region 64622
Cpgi18387 7 16771924 to 16772169 245 CpG island CpG island 18387
Cpgi18388 7 16781012 to 16782647 1635 CpG island CpG island 18388
Tssr64623 7 16781341 to 16781352 11 + TSS region transcription start site region 64623
Slc1a5 7 16781345 to 16798274 16929 + protein coding gene solute carrier family 1 (neutral amino acid transporter), member 5
Tssr64624 7 16781359 to 16781376 17 + TSS region transcription start site region 64624
Tssr64625 7 16782303 to 16782391 88 + TSS region transcription start site region 64625
9530015I06Rik 7 16789016 to 16789324 308 unclassified gene RIKEN cDNA 9530015I06 gene
Tssr64626 7 16792525 to 16792550 25 + TSS region transcription start site region 64626
Tssr64627 7 16793530 to 16793541 11 + TSS region transcription start site region 64627
Cpgi18389 7 16795710 to 16796090 380 CpG island CpG island 18389
Fkrp 7 16809246 to 16816732 7486 - protein coding gene fukutin related protein
Cpgi18390 7 16810452 to 16811991 1539 CpG island CpG island 18390
Tssr70768 7 16815472 to 16815481 9 - TSS region transcription start site region 70768
Cpgi18391 7 16815811 to 16817220 1409 CpG island CpG island 18391
Strn4 7 16815889 to 16840931 25042 + protein coding gene striatin, calmodulin binding protein 4
Tssr64628 7 16816273 to 16816286 13 + TSS region transcription start site region 64628
Tssr64629 7 16816299 to 16816361 62 + TSS region transcription start site region 64629
Tssr70769 7 16816731 to 16816744 13 - TSS region transcription start site region 70769
Tssr64630 7 16830840 to 16830861 21 + TSS region transcription start site region 64630
Tssr64631 7 16830862 to 16830871 9 + TSS region transcription start site region 64631
Tssr64632 7 16830876 to 16830883 7 + TSS region transcription start site region 64632
Tssr64633 7 16838124 to 16838141 17 + TSS region transcription start site region 64633
Tssr64634 7 16838152 to 16838163 11 + TSS region transcription start site region 64634
Tssr64635 7 16838176 to 16838193 17 + TSS region transcription start site region 64635
Cpgi18392 7 16842584 to 16843883 1299 CpG island CpG island 18392
Tssr64636 7 16842896 to 16842954 58 + TSS region transcription start site region 64636
Prkd2 7 16842902 to 16870461 27559 + protein coding gene protein kinase D2
Tssr64637 7 16842956 to 16842963 7 + TSS region transcription start site region 64637
Tssr64638 7 16842970 to 16843016 46 + TSS region transcription start site region 64638
Tssr64639 7 16843021 to 16843040 19 + TSS region transcription start site region 64639
Tssr64640 7 16843049 to 16843077 28 + TSS region transcription start site region 64640
Tssr64641 7 16843086 to 16843103 17 + TSS region transcription start site region 64641
Tssr64642 7 16843175 to 16843211 36 + TSS region transcription start site region 64642
Tssr64643 7 16844138 to 16844143 5 + TSS region transcription start site region 64643
Tssr64644 7 16845811 to 16845826 15 + TSS region transcription start site region 64644
Cpgi18393 7 16847573 to 16847797 224 CpG island CpG island 18393
Cpgi18394 7 16848705 to 16849046 341 CpG island CpG island 18394
Cpgi18395 7 16858292 to 16858633 341 CpG island CpG island 18395
Cpgi18396 7 16865550 to 16865922 372 CpG island CpG island 18396
Cpgi18397 7 16869506 to 16870062 556 CpG island CpG island 18397
9330104G04Rik 7 16871347 to 16874886 3539 - lincRNA gene RIKEN cDNA 9330104G04 gene
Tssr70770 7 16874365 to 16874396 31 - TSS region transcription start site region 70770
Tssr70771 7 16874845 to 16874889 44 - TSS region transcription start site region 70771
Cpgi18398 7 16874901 to 16875855 954 CpG island CpG island 18398
Tssr64645 7 16875302 to 16875392 90 + TSS region transcription start site region 64645
Dact3 7 16875317 to 16887301 11984 + protein coding gene dishevelled-binding antagonist of beta-catenin 3
Tssr64646 7 16875406 to 16875447 41 + TSS region transcription start site region 64646
Tssr64647 7 16876984 to 16876986 2 + TSS region transcription start site region 64647
Cpgi18399 7 16884991 to 16886573 1582 CpG island CpG island 18399
Tssr64648 7 16886422 to 16886472 50 + TSS region transcription start site region 64648
2700080J24Rik 7 16889406 to 16891067 1661 - unclassified gene RIKEN cDNA 2700080J24 gene
Cpgi18400 7 16891022 to 16891185 163 CpG island CpG island 18400
Tssr64649 7 16891755 to 16891800 45 + TSS region transcription start site region 64649
Gng8 7 16891786 to 16895436 3650 + protein coding gene guanine nucleotide binding protein (G protein), gamma 8
Tssr64650 7 16891824 to 16891851 27 + TSS region transcription start site region 64650
Cpgi18401 7 16891995 to 16892550 555 CpG island CpG island 18401
Tssr64651 7 16893109 to 16893123 14 + TSS region transcription start site region 64651
Tssr64652 7 16893802 to 16893846 44 + TSS region transcription start site region 64652
Cpgi18402 7 16894837 to 16895413 576 CpG island CpG island 18402
Tssr70772 7 16899351 to 16899358 7 - TSS region transcription start site region 70772
D7Mit56 7 16903368 to 16903498 130 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 56
Drsi 7 16903368 to 49509583 32606215 QTL DCC-related Spp1 induction
Abhr3 7 16903498 to 3266568 -13636930 QTL allergen-induced bronchial hyperresponsiveness 3
Tssr64653 7 16905971 to 16906013 42 + TSS region transcription start site region 64653
Tssr64654 7 16906488 to 16906539 51 + TSS region transcription start site region 64654
Ptgir 7 16906490 to 16910905 4415 + protein coding gene prostaglandin I receptor (IP)
Cpgi18403 7 16906884 to 16907610 726 CpG island CpG island 18403
Tssr64655 7 16907024 to 16907033 9 + TSS region transcription start site region 64655
Tssr64656 7 16908055 to 16908088 33 + TSS region transcription start site region 64656
Tssr64657 7 16908716 to 16908735 19 + TSS region transcription start site region 64657
Tssr70773 7 16910042 to 16910074 32 - TSS region transcription start site region 70773
Tssr64658 7 16910478 to 16910490 12 + TSS region transcription start site region 64658
Calm3 7 16915379 to 16924032 8653 - protein coding gene calmodulin 3
Tssr70774 7 16915460 to 16915476 16 - TSS region transcription start site region 70774
Tssr70775 7 16915591 to 16915602 11 - TSS region transcription start site region 70775
Tssr70776 7 16915652 to 16915672 20 - TSS region transcription start site region 70776
Tssr70777 7 16915797 to 16915813 16 - TSS region transcription start site region 70777
Cpgi18404 7 16915922 to 16916338 416 CpG island CpG island 18404
Tssr70778 7 16916008 to 16916035 27 - TSS region transcription start site region 70778
Tssr70779 7 16916040 to 16916060 20 - TSS region transcription start site region 70779
Tssr70780 7 16916339 to 16916353 14 - TSS region transcription start site region 70780
Tssr70781 7 16916357 to 16916375 18 - TSS region transcription start site region 70781
Tssr70782 7 16916728 to 16916836 108 - TSS region transcription start site region 70782
Tssr70783 7 16916886 to 16916915 29 - TSS region transcription start site region 70783
Tssr70784 7 16916918 to 16916938 20 - TSS region transcription start site region 70784
Tssr70785 7 16917184 to 16917212 28 - TSS region transcription start site region 70785
Tssr70786 7 16917632 to 16917647 15 - TSS region transcription start site region 70786
Tssr70787 7 16917680 to 16917699 19 - TSS region transcription start site region 70787
Tssr70788 7 16917713 to 16917728 15 - TSS region transcription start site region 70788
Gm45972 7 16921731 to 16923538 1807 + lncRNA gene predicted gene, 45972
Tssr64659 7 16922049 to 16922064 15 + TSS region transcription start site region 64659
Cpgi18405 7 16923314 to 16924654 1340 CpG island CpG island 18405
Tssr70789 7 16923875 to 16923891 16 - TSS region transcription start site region 70789
Tssr70790 7 16923901 to 16924026 125 - TSS region transcription start site region 70790
Tssr70791 7 16924132 to 16924137 5 - TSS region transcription start site region 70791
Gm32630 7 16930314 to 16932609 2295 - lncRNA gene predicted gene, 32630
Cpgi18406 7 16944454 to 16945765 1311 CpG island CpG island 18406
Tssr64660 7 16944645 to 16944720 75 + TSS region transcription start site region 64660
Pnmal2 7 16944682 to 16948828 4146 + protein coding gene PNMA-like 2
Tssr70792 7 16945649 to 16945657 8 - TSS region transcription start site region 70792
Tssr64661 7 16945694 to 16945768 74 + TSS region transcription start site region 64661
Cpgi18407 7 16946260 to 16947703 1443 CpG island CpG island 18407
Cpgi18408 7 16949951 to 16950400 449 CpG island CpG island 18408
Tssr64662 7 16950128 to 16950139 11 + TSS region transcription start site region 64662
Tssr64663 7 16950157 to 16950164 7 + TSS region transcription start site region 64663
D7Jcs1 7 16950820 to 16951114 294 DNA segment DNA segment, Chr 7, John C. Schimenti 1
Gm25815 7 16953395 to 16953501 106 - snRNA gene predicted gene, 25815
Pnmal1 7 16959679 to 16964607 4928 + protein coding gene PNMA-like 1
Tssr64664 7 16959714 to 16959800 86 + TSS region transcription start site region 64664
Tssr64665 7 16959821 to 16959832 11 + TSS region transcription start site region 64665
Cpgi18409 7 16983049 to 16983567 518 CpG island CpG island 18409
Tssr64666 7 16983065 to 16983150 85 + TSS region transcription start site region 64666
Tssr64667 7 16983173 to 16983183 10 + TSS region transcription start site region 64667
Gm42372 7 16983477 to 16988146 4669 + protein coding gene predicted gene, 42372
Tssr64668 7 16986914 to 16986937 23 + TSS region transcription start site region 64668
Tssr64669 7 16986960 to 16986988 28 + TSS region transcription start site region 64669
Tssr64670 7 16987024 to 16987063 39 + TSS region transcription start site region 64670
Tssr64671 7 16987197 to 16987217 20 + TSS region transcription start site region 64671
Tssr64672 7 16993798 to 16993812 14 + TSS region transcription start site region 64672
Tssr64673 7 16993865 to 16993926 61 + TSS region transcription start site region 64673
Tssr64674 7 16993977 to 16994039 62 + TSS region transcription start site region 64674
Cpgi18410 7 16993991 to 16995116 1125 CpG island CpG island 18410
Ccdc8 7 16994588 to 16996645 2057 + protein coding gene coiled-coil domain containing 8
D7Jcs2 7 16998665 to 16998952 287 DNA segment DNA segment, Chr 7, John C. Schimenti 2
Ppp5c 7 17004640 to 17027914 23274 - protein coding gene protein phosphatase 5, catalytic subunit
Tssr70793 7 17018621 to 17018625 4 - TSS region transcription start site region 70793
Tssr70794 7 17024913 to 17024945 32 - TSS region transcription start site region 70794
Cpgi18411 7 17027397 to 17028219 822 CpG island CpG island 18411
Tssr70795 7 17027807 to 17027846 39 - TSS region transcription start site region 70795
Tssr70796 7 17027853 to 17027921 68 - TSS region transcription start site region 70796
Hif3a 7 17031507 to 17062427 30920 - protein coding gene hypoxia inducible factor 3, alpha subunit
Tssr70797 7 17042565 to 17042587 22 - TSS region transcription start site region 70797
Tssr70798 7 17053127 to 17053131 4 - TSS region transcription start site region 70798
Cpgi18412 7 17056066 to 17056674 608 CpG island CpG island 18412
Tssr64675 7 17056273 to 17056306 33 + TSS region transcription start site region 64675
Tssr70799 7 17056669 to 17056696 27 - TSS region transcription start site region 70799
Tssr70800 7 17056704 to 17056717 13 - TSS region transcription start site region 70800
Tssr70801 7 17056828 to 17056874 46 - TSS region transcription start site region 70801
4833404L02Rik 7 17058534 to 17059441 907 + unclassified gene RIKEN cDNA 4833404L02 gene
D7Mit190 7 17059007 to 17059154 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 190
Tssr70802 7 17060885 to 17060922 37 - TSS region transcription start site region 70802
Tssr70803 7 17060924 to 17060936 12 - TSS region transcription start site region 70803
Cpgi18413 7 17062292 to 17062452 160 CpG island CpG island 18413
Tssr70804 7 17062387 to 17062423 36 - TSS region transcription start site region 70804
Psg16 7 17074040 to 17133450 59410 + protein coding gene pregnancy specific glycoprotein 16
Tssr2084 7 17074050 to 17074089 39 + TSS region transcription start site region 2084
Cpgi18414 7 17074327 to 17074609 282 CpG island CpG island 18414
Gm35698 7 17077464 to 17079162 1698 - pseudogene predicted gene, 35698
Gm45219 7 17078191 to 17078655 464 - pseudogene predicted gene 45219
Tssr70805 7 17082327 to 17082350 23 - TSS region transcription start site region 70805
Tssr64676 7 17087934 to 17087961 27 + TSS region transcription start site region 64676
Tssr64677 7 17087974 to 17087977 3 + TSS region transcription start site region 64677
Tssr64678 7 17087987 to 17087995 8 + TSS region transcription start site region 64678
Tssr64679 7 17088032 to 17088049 17 + TSS region transcription start site region 64679
Tssr64680 7 17088059 to 17088082 23 + TSS region transcription start site region 64680
Tssr64681 7 17088652 to 17088655 3 + TSS region transcription start site region 64681
Tssr64682 7 17090451 to 17090459 8 + TSS region transcription start site region 64682
Tssr70806 7 17090485 to 17090525 40 - TSS region transcription start site region 70806
Tssr64683 7 17090519 to 17090522 3 + TSS region transcription start site region 64683
Tssr64684 7 17090566 to 17090575 9 + TSS region transcription start site region 64684
Tssr70807 7 17090591 to 17090604 13 - TSS region transcription start site region 70807
Tssr64685 7 17090638 to 17090646 8 + TSS region transcription start site region 64685
Tssr64686 7 17093673 to 17093686 13 + TSS region transcription start site region 64686
Tssr64687 7 17093695 to 17093698 3 + TSS region transcription start site region 64687
Tssr70808 7 17093871 to 17093903 32 - TSS region transcription start site region 70808
Tssr64688 7 17095006 to 17095011 5 + TSS region transcription start site region 64688
Tssr70809 7 17095050 to 17095061 11 - TSS region transcription start site region 70809
Tssr64689 7 17095084 to 17095095 11 + TSS region transcription start site region 64689
Tssr70810 7 17095086 to 17095091 5 - TSS region transcription start site region 70810