Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16428410-17059294

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zc3h4 7 16400910 to 16437696 36786 + protein coding gene zinc finger CCCH-type containing 4
Cpgi18377 7 16452774 to 16453537 763 CpG island CpG island 18377
Tmem160 7 16452779 to 16455490 2711 + protein coding gene transmembrane protein 160
Tssr64613 7 16452927 to 16452968 41 + TSS region transcription start site region 64613
Tssr64614 7 16453024 to 16453031 7 + TSS region transcription start site region 64614
Cpgi18378 7 16455009 to 16455287 278 CpG island CpG island 18378
Npas1 7 16455718 to 16476816 21098 - protein coding gene neuronal PAS domain protein 1
Cpgi18379 7 16460549 to 16460924 375 CpG island CpG island 18379
Cpgi18380 7 16463262 to 16463526 264 CpG island CpG island 18380
n-R5s151 7 16471813 to 16471931 118 + rRNA gene nuclear encoded rRNA 5S 151
Cpgi18381 7 16474473 to 16474947 474 CpG island CpG island 18381
Cpgi18382 7 16475210 to 16476968 1758 CpG island CpG island 18382
Tssr70748 7 16476765 to 16476792 27 - TSS region transcription start site region 70748
Arhgap35 7 16494473 to 16615244 120771 - protein coding gene Rho GTPase activating protein 35
Tssr70749 7 16494727 to 16494731 4 - TSS region transcription start site region 70749
Tssr70750 7 16497803 to 16497820 17 - TSS region transcription start site region 70750
Gm17826 7 16498732 to 16499529 797 + pseudogene predicted gene, 17826
Tssr70751 7 16500327 to 16500330 3 - TSS region transcription start site region 70751
Gm17981 7 16514406 to 16515093 687 - pseudogene predicted gene, 17981
Tssr70752 7 16604500 to 16604506 6 - TSS region transcription start site region 70752
D7Mit342 7 16606254 to 16606419 165 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 342
Cpgi18383 7 16613816 to 16615782 1966 CpG island CpG island 18383
Gm29443 7 16613824 to 16632643 18819 + antisense lncRNA gene predicted gene 29443
Tssr70753 7 16614548 to 16614606 58 - TSS region transcription start site region 70753
Tssr70754 7 16614613 to 16614623 10 - TSS region transcription start site region 70754
Tssr70755 7 16614670 to 16614711 41 - TSS region transcription start site region 70755
Tssr70756 7 16614778 to 16614788 10 - TSS region transcription start site region 70756
Tssr70757 7 16614792 to 16614805 13 - TSS region transcription start site region 70757
Tssr70758 7 16614849 to 16614860 11 - TSS region transcription start site region 70758
Tssr70759 7 16614881 to 16614891 10 - TSS region transcription start site region 70759
Tssr70760 7 16614958 to 16615021 63 - TSS region transcription start site region 70760
Tssr70761 7 16615054 to 16615067 13 - TSS region transcription start site region 70761
Tssr70762 7 16615073 to 16615138 65 - TSS region transcription start site region 70762
Tssr70763 7 16615266 to 16615276 10 - TSS region transcription start site region 70763
Tssr64615 7 16615607 to 16615620 13 + TSS region transcription start site region 64615
Gm44589 7 16616351 to 16616465 114 + pseudogene predicted gene 44589
Gm29442 7 16618627 to 16619832 1205 - lincRNA gene predicted gene 29442
Cpgi18384 7 16618924 to 16619254 330 CpG island CpG island 18384
Tssr70764 7 16619872 to 16619873 1 - TSS region transcription start site region 70764
Gm24708 7 16624575 to 16624677 102 - snRNA gene predicted gene, 24708
Gm29725 7 16647383 to 16647789 406 - pseudogene predicted gene, 29725
Ceacam-ps1 7 16649030 to 16657478 8448 - pseudogene carcinoembryonic antigen-related cell adhesion molecule pseudogene 1
Tssr70765 7 16657496 to 16657500 4 - TSS region transcription start site region 70765
Ceacam15 7 16671331 to 16675705 4374 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 15
Tssr70766 7 16675617 to 16675623 6 - TSS region transcription start site region 70766
Gm8209 7 16693817 to 16694369 552 - pseudogene predicted gene 8209
Tssr64616 7 16700818 to 16700826 8 + TSS region transcription start site region 64616
Tssr64617 7 16714851 to 16714855 4 + TSS region transcription start site region 64617
Gm5586 7 16719116 to 16719910 794 - pseudogene predicted gene 5586
Tssr70767 7 16719925 to 16719940 15 - TSS region transcription start site region 70767
Ceacam9 7 16721929 to 16726110 4181 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 9
Tssr64618 7 16721954 to 16721959 5 + TSS region transcription start site region 64618
Cpgi18385 7 16723689 to 16723849 160 CpG island CpG island 18385
Tssr64619 7 16733665 to 16733679 14 + TSS region transcription start site region 64619
Tssr64620 7 16734406 to 16734408 2 + TSS region transcription start site region 64620
Cpgi18386 7 16738270 to 16738757 487 CpG island CpG island 18386
Ap2s1 7 16738410 to 16749294 10884 + protein coding gene adaptor-related protein complex 2, sigma 1 subunit
Tssr64621 7 16738436 to 16738476 40 + TSS region transcription start site region 64621
Tssr64622 7 16749092 to 16749104 12 + TSS region transcription start site region 64622
Cpgi18387 7 16771924 to 16772169 245 CpG island CpG island 18387
Cpgi18388 7 16781012 to 16782647 1635 CpG island CpG island 18388
Tssr64623 7 16781341 to 16781352 11 + TSS region transcription start site region 64623
Slc1a5 7 16781345 to 16798274 16929 + protein coding gene solute carrier family 1 (neutral amino acid transporter), member 5
Tssr64624 7 16781359 to 16781376 17 + TSS region transcription start site region 64624
Tssr64625 7 16782303 to 16782391 88 + TSS region transcription start site region 64625
9530015I06Rik 7 16789016 to 16789324 308 unclassified gene RIKEN cDNA 9530015I06 gene
Tssr64626 7 16792525 to 16792550 25 + TSS region transcription start site region 64626
Tssr64627 7 16793530 to 16793541 11 + TSS region transcription start site region 64627
Cpgi18389 7 16795710 to 16796090 380 CpG island CpG island 18389
Fkrp 7 16809246 to 16816732 7486 - protein coding gene fukutin related protein
Cpgi18390 7 16810452 to 16811991 1539 CpG island CpG island 18390
Tssr70768 7 16815472 to 16815481 9 - TSS region transcription start site region 70768
Cpgi18391 7 16815811 to 16817220 1409 CpG island CpG island 18391
Strn4 7 16815889 to 16840931 25042 + protein coding gene striatin, calmodulin binding protein 4
Tssr64628 7 16816273 to 16816286 13 + TSS region transcription start site region 64628
Tssr64629 7 16816299 to 16816361 62 + TSS region transcription start site region 64629
Tssr70769 7 16816731 to 16816744 13 - TSS region transcription start site region 70769
Tssr64630 7 16830840 to 16830861 21 + TSS region transcription start site region 64630
Tssr64631 7 16830862 to 16830871 9 + TSS region transcription start site region 64631
Tssr64632 7 16830876 to 16830883 7 + TSS region transcription start site region 64632
Tssr64633 7 16838124 to 16838141 17 + TSS region transcription start site region 64633
Tssr64634 7 16838152 to 16838163 11 + TSS region transcription start site region 64634
Tssr64635 7 16838176 to 16838193 17 + TSS region transcription start site region 64635
Cpgi18392 7 16842584 to 16843883 1299 CpG island CpG island 18392
Tssr64636 7 16842896 to 16842954 58 + TSS region transcription start site region 64636
Prkd2 7 16842902 to 16870461 27559 + protein coding gene protein kinase D2
Tssr64637 7 16842956 to 16842963 7 + TSS region transcription start site region 64637
Tssr64638 7 16842970 to 16843016 46 + TSS region transcription start site region 64638
Tssr64639 7 16843021 to 16843040 19 + TSS region transcription start site region 64639
Tssr64640 7 16843049 to 16843077 28 + TSS region transcription start site region 64640
Tssr64641 7 16843086 to 16843103 17 + TSS region transcription start site region 64641
Tssr64642 7 16843175 to 16843211 36 + TSS region transcription start site region 64642
Tssr64643 7 16844138 to 16844143 5 + TSS region transcription start site region 64643
Tssr64644 7 16845811 to 16845826 15 + TSS region transcription start site region 64644
Cpgi18393 7 16847573 to 16847797 224 CpG island CpG island 18393
Cpgi18394 7 16848705 to 16849046 341 CpG island CpG island 18394
Cpgi18395 7 16858292 to 16858633 341 CpG island CpG island 18395
Cpgi18396 7 16865550 to 16865922 372 CpG island CpG island 18396
Cpgi18397 7 16869506 to 16870062 556 CpG island CpG island 18397
9330104G04Rik 7 16871347 to 16874886 3539 - lincRNA gene RIKEN cDNA 9330104G04 gene
Tssr70770 7 16874365 to 16874396 31 - TSS region transcription start site region 70770
Tssr70771 7 16874845 to 16874889 44 - TSS region transcription start site region 70771
Cpgi18398 7 16874901 to 16875855 954 CpG island CpG island 18398
Tssr64645 7 16875302 to 16875392 90 + TSS region transcription start site region 64645
Dact3 7 16875317 to 16887301 11984 + protein coding gene dishevelled-binding antagonist of beta-catenin 3
Tssr64646 7 16875406 to 16875447 41 + TSS region transcription start site region 64646
Tssr64647 7 16876984 to 16876986 2 + TSS region transcription start site region 64647
Cpgi18399 7 16884991 to 16886573 1582 CpG island CpG island 18399
Tssr64648 7 16886422 to 16886472 50 + TSS region transcription start site region 64648
2700080J24Rik 7 16889406 to 16891067 1661 - unclassified gene RIKEN cDNA 2700080J24 gene
Cpgi18400 7 16891022 to 16891185 163 CpG island CpG island 18400
Tssr64649 7 16891755 to 16891800 45 + TSS region transcription start site region 64649
Gng8 7 16891786 to 16895436 3650 + protein coding gene guanine nucleotide binding protein (G protein), gamma 8
Tssr64650 7 16891824 to 16891851 27 + TSS region transcription start site region 64650
Cpgi18401 7 16891995 to 16892550 555 CpG island CpG island 18401
Tssr64651 7 16893109 to 16893123 14 + TSS region transcription start site region 64651
Tssr64652 7 16893802 to 16893846 44 + TSS region transcription start site region 64652
Cpgi18402 7 16894837 to 16895413 576 CpG island CpG island 18402
Tssr70772 7 16899351 to 16899358 7 - TSS region transcription start site region 70772
Drsi 7 16903368 to 49509583 32606215 QTL DCC-related Spp1 induction
D7Mit56 7 16903368 to 16903498 130 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 56
Abhr3 7 16903498 to 3266568 -13636930 QTL allergen-induced bronchial hyperresponsiveness 3
Tssr64653 7 16905971 to 16906013 42 + TSS region transcription start site region 64653
Tssr64654 7 16906488 to 16906539 51 + TSS region transcription start site region 64654
Ptgir 7 16906490 to 16910905 4415 + protein coding gene prostaglandin I receptor (IP)
Cpgi18403 7 16906884 to 16907610 726 CpG island CpG island 18403
Tssr64655 7 16907024 to 16907033 9 + TSS region transcription start site region 64655
Tssr64656 7 16908055 to 16908088 33 + TSS region transcription start site region 64656
Tssr64657 7 16908716 to 16908735 19 + TSS region transcription start site region 64657
Tssr70773 7 16910042 to 16910074 32 - TSS region transcription start site region 70773
Tssr64658 7 16910478 to 16910490 12 + TSS region transcription start site region 64658
Calm3 7 16915379 to 16924032 8653 - protein coding gene calmodulin 3
Tssr70774 7 16915460 to 16915476 16 - TSS region transcription start site region 70774
Tssr70775 7 16915591 to 16915602 11 - TSS region transcription start site region 70775
Tssr70776 7 16915652 to 16915672 20 - TSS region transcription start site region 70776
Tssr70777 7 16915797 to 16915813 16 - TSS region transcription start site region 70777
Cpgi18404 7 16915922 to 16916338 416 CpG island CpG island 18404
Tssr70778 7 16916008 to 16916035 27 - TSS region transcription start site region 70778
Tssr70779 7 16916040 to 16916060 20 - TSS region transcription start site region 70779
Tssr70780 7 16916339 to 16916353 14 - TSS region transcription start site region 70780
Tssr70781 7 16916357 to 16916375 18 - TSS region transcription start site region 70781
Tssr70782 7 16916728 to 16916836 108 - TSS region transcription start site region 70782
Tssr70783 7 16916886 to 16916915 29 - TSS region transcription start site region 70783
Tssr70784 7 16916918 to 16916938 20 - TSS region transcription start site region 70784
Tssr70785 7 16917184 to 16917212 28 - TSS region transcription start site region 70785
Tssr70786 7 16917632 to 16917647 15 - TSS region transcription start site region 70786
Tssr70787 7 16917680 to 16917699 19 - TSS region transcription start site region 70787
Tssr70788 7 16917713 to 16917728 15 - TSS region transcription start site region 70788
Gm45972 7 16921731 to 16923538 1807 + lncRNA gene predicted gene, 45972
Tssr64659 7 16922049 to 16922064 15 + TSS region transcription start site region 64659
Cpgi18405 7 16923314 to 16924654 1340 CpG island CpG island 18405
Tssr70789 7 16923875 to 16923891 16 - TSS region transcription start site region 70789
Tssr70790 7 16923901 to 16924026 125 - TSS region transcription start site region 70790
Tssr70791 7 16924132 to 16924137 5 - TSS region transcription start site region 70791
Gm32630 7 16930314 to 16932609 2295 - lncRNA gene predicted gene, 32630
Cpgi18406 7 16944454 to 16945765 1311 CpG island CpG island 18406
Tssr64660 7 16944645 to 16944720 75 + TSS region transcription start site region 64660
Pnmal2 7 16944682 to 16948828 4146 + protein coding gene PNMA-like 2
Tssr70792 7 16945649 to 16945657 8 - TSS region transcription start site region 70792
Tssr64661 7 16945694 to 16945768 74 + TSS region transcription start site region 64661
Cpgi18407 7 16946260 to 16947703 1443 CpG island CpG island 18407
Cpgi18408 7 16949951 to 16950400 449 CpG island CpG island 18408
Tssr64662 7 16950128 to 16950139 11 + TSS region transcription start site region 64662
Tssr64663 7 16950157 to 16950164 7 + TSS region transcription start site region 64663
D7Jcs1 7 16950820 to 16951114 294 DNA segment DNA segment, Chr 7, John C. Schimenti 1
Gm25815 7 16953395 to 16953501 106 - snRNA gene predicted gene, 25815
Pnmal1 7 16959679 to 16964607 4928 + protein coding gene PNMA-like 1
Tssr64664 7 16959714 to 16959800 86 + TSS region transcription start site region 64664
Tssr64665 7 16959821 to 16959832 11 + TSS region transcription start site region 64665
Cpgi18409 7 16983049 to 16983567 518 CpG island CpG island 18409
Tssr64666 7 16983065 to 16983150 85 + TSS region transcription start site region 64666
Tssr64667 7 16983173 to 16983183 10 + TSS region transcription start site region 64667
Gm42372 7 16983477 to 16988146 4669 + protein coding gene predicted gene, 42372
Tssr64668 7 16986914 to 16986937 23 + TSS region transcription start site region 64668
Tssr64669 7 16986960 to 16986988 28 + TSS region transcription start site region 64669
Tssr64670 7 16987024 to 16987063 39 + TSS region transcription start site region 64670
Tssr64671 7 16987197 to 16987217 20 + TSS region transcription start site region 64671
Tssr64672 7 16993798 to 16993812 14 + TSS region transcription start site region 64672
Tssr64673 7 16993865 to 16993926 61 + TSS region transcription start site region 64673
Tssr64674 7 16993977 to 16994039 62 + TSS region transcription start site region 64674
Cpgi18410 7 16993991 to 16995116 1125 CpG island CpG island 18410
Ccdc8 7 16994588 to 16996645 2057 + protein coding gene coiled-coil domain containing 8
D7Jcs2 7 16998665 to 16998952 287 DNA segment DNA segment, Chr 7, John C. Schimenti 2
Ppp5c 7 17004640 to 17027914 23274 - protein coding gene protein phosphatase 5, catalytic subunit
Tssr70793 7 17018621 to 17018625 4 - TSS region transcription start site region 70793
Tssr70794 7 17024913 to 17024945 32 - TSS region transcription start site region 70794
Cpgi18411 7 17027397 to 17028219 822 CpG island CpG island 18411
Tssr70795 7 17027807 to 17027846 39 - TSS region transcription start site region 70795
Tssr70796 7 17027853 to 17027921 68 - TSS region transcription start site region 70796
Hif3a 7 17031507 to 17062427 30920 - protein coding gene hypoxia inducible factor 3, alpha subunit
Tssr70797 7 17042565 to 17042587 22 - TSS region transcription start site region 70797
Tssr70798 7 17053127 to 17053131 4 - TSS region transcription start site region 70798
Cpgi18412 7 17056066 to 17056674 608 CpG island CpG island 18412
Tssr64675 7 17056273 to 17056306 33 + TSS region transcription start site region 64675
Tssr70799 7 17056669 to 17056696 27 - TSS region transcription start site region 70799
Tssr70800 7 17056704 to 17056717 13 - TSS region transcription start site region 70800
Tssr70801 7 17056828 to 17056874 46 - TSS region transcription start site region 70801
4833404L02Rik 7 17058534 to 17059441 907 + unclassified gene RIKEN cDNA 4833404L02 gene
D7Mit190 7 17059007 to 17059154 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 190