Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16416254-16796419

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zc3h4 7 16400910 to 16437696 36786 + protein coding gene zinc finger CCCH-type containing 4
Gm45510 7 16413908 to 16416621 2713 - antisense lncRNA gene predicted gene 45510
Tssr64612 7 16420953 to 16420996 43 + TSS region transcription start site region 64612
Cpgi18377 7 16452774 to 16453537 763 CpG island CpG island 18377
Tmem160 7 16452779 to 16455490 2711 + protein coding gene transmembrane protein 160
Tssr64613 7 16452927 to 16452968 41 + TSS region transcription start site region 64613
Tssr64614 7 16453024 to 16453031 7 + TSS region transcription start site region 64614
Cpgi18378 7 16455009 to 16455287 278 CpG island CpG island 18378
Npas1 7 16455718 to 16476816 21098 - protein coding gene neuronal PAS domain protein 1
Cpgi18379 7 16460549 to 16460924 375 CpG island CpG island 18379
Cpgi18380 7 16463262 to 16463526 264 CpG island CpG island 18380
n-R5s151 7 16471813 to 16471931 118 + rRNA gene nuclear encoded rRNA 5S 151
Cpgi18381 7 16474473 to 16474947 474 CpG island CpG island 18381
Cpgi18382 7 16475210 to 16476968 1758 CpG island CpG island 18382
Tssr70748 7 16476765 to 16476792 27 - TSS region transcription start site region 70748
Arhgap35 7 16494473 to 16615244 120771 - protein coding gene Rho GTPase activating protein 35
Tssr70749 7 16494727 to 16494731 4 - TSS region transcription start site region 70749
Tssr70750 7 16497803 to 16497820 17 - TSS region transcription start site region 70750
Gm17826 7 16498732 to 16499529 797 + pseudogene predicted gene, 17826
Tssr70751 7 16500327 to 16500330 3 - TSS region transcription start site region 70751
Gm17981 7 16514406 to 16515093 687 - pseudogene predicted gene, 17981
Tssr70752 7 16604500 to 16604506 6 - TSS region transcription start site region 70752
D7Mit342 7 16606254 to 16606419 165 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 342
Cpgi18383 7 16613816 to 16615782 1966 CpG island CpG island 18383
Gm29443 7 16613824 to 16632643 18819 + antisense lncRNA gene predicted gene 29443
Tssr70753 7 16614548 to 16614606 58 - TSS region transcription start site region 70753
Tssr70754 7 16614613 to 16614623 10 - TSS region transcription start site region 70754
Tssr70755 7 16614670 to 16614711 41 - TSS region transcription start site region 70755
Tssr70756 7 16614778 to 16614788 10 - TSS region transcription start site region 70756
Tssr70757 7 16614792 to 16614805 13 - TSS region transcription start site region 70757
Tssr70758 7 16614849 to 16614860 11 - TSS region transcription start site region 70758
Tssr70759 7 16614881 to 16614891 10 - TSS region transcription start site region 70759
Tssr70760 7 16614958 to 16615021 63 - TSS region transcription start site region 70760
Tssr70761 7 16615054 to 16615067 13 - TSS region transcription start site region 70761
Tssr70762 7 16615073 to 16615138 65 - TSS region transcription start site region 70762
Tssr70763 7 16615266 to 16615276 10 - TSS region transcription start site region 70763
Tssr64615 7 16615607 to 16615620 13 + TSS region transcription start site region 64615
Gm44589 7 16616351 to 16616465 114 + pseudogene predicted gene 44589
Gm29442 7 16618627 to 16619832 1205 - lincRNA gene predicted gene 29442
Cpgi18384 7 16618924 to 16619254 330 CpG island CpG island 18384
Tssr70764 7 16619872 to 16619873 1 - TSS region transcription start site region 70764
Gm24708 7 16624575 to 16624677 102 - snRNA gene predicted gene, 24708
Gm29725 7 16647383 to 16647789 406 - pseudogene predicted gene, 29725
Ceacam-ps1 7 16649030 to 16657478 8448 - pseudogene carcinoembryonic antigen-related cell adhesion molecule pseudogene 1
Tssr70765 7 16657496 to 16657500 4 - TSS region transcription start site region 70765
Ceacam15 7 16671331 to 16675705 4374 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 15
Tssr70766 7 16675617 to 16675623 6 - TSS region transcription start site region 70766
Gm8209 7 16693817 to 16694369 552 - pseudogene predicted gene 8209
Tssr64616 7 16700818 to 16700826 8 + TSS region transcription start site region 64616
Tssr64617 7 16714851 to 16714855 4 + TSS region transcription start site region 64617
Gm5586 7 16719116 to 16719910 794 - pseudogene predicted gene 5586
Tssr70767 7 16719925 to 16719940 15 - TSS region transcription start site region 70767
Ceacam9 7 16721929 to 16726110 4181 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 9
Tssr64618 7 16721954 to 16721959 5 + TSS region transcription start site region 64618
Cpgi18385 7 16723689 to 16723849 160 CpG island CpG island 18385
Tssr64619 7 16733665 to 16733679 14 + TSS region transcription start site region 64619
Tssr64620 7 16734406 to 16734408 2 + TSS region transcription start site region 64620
Cpgi18386 7 16738270 to 16738757 487 CpG island CpG island 18386
Ap2s1 7 16738410 to 16749294 10884 + protein coding gene adaptor-related protein complex 2, sigma 1 subunit
Tssr64621 7 16738436 to 16738476 40 + TSS region transcription start site region 64621
Tssr64622 7 16749092 to 16749104 12 + TSS region transcription start site region 64622
Cpgi18387 7 16771924 to 16772169 245 CpG island CpG island 18387
Cpgi18388 7 16781012 to 16782647 1635 CpG island CpG island 18388
Tssr64623 7 16781341 to 16781352 11 + TSS region transcription start site region 64623
Slc1a5 7 16781345 to 16798274 16929 + protein coding gene solute carrier family 1 (neutral amino acid transporter), member 5
Tssr64624 7 16781359 to 16781376 17 + TSS region transcription start site region 64624
Tssr64625 7 16782303 to 16782391 88 + TSS region transcription start site region 64625
9530015I06Rik 7 16789016 to 16789324 308 unclassified gene RIKEN cDNA 9530015I06 gene
Tssr64626 7 16792525 to 16792550 25 + TSS region transcription start site region 64626
Tssr64627 7 16793530 to 16793541 11 + TSS region transcription start site region 64627
Cpgi18389 7 16795710 to 16796090 380 CpG island CpG island 18389