Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:16179613-17049623

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291 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Meis3 7 16175096 to 16186510 11414 + protein coding gene Meis homeobox 3
Dhx34 7 16197220 to 16222079 24859 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 34
Tssr70704 7 16204126 to 16204133 7 - TSS region transcription start site region 70704
Tssr70705 7 16204154 to 16204213 59 - TSS region transcription start site region 70705
Tssr2080 7 16204247 to 16204252 5 - TSS region transcription start site region 2080
Cpgi18361 7 16212849 to 16213036 187 CpG island CpG island 18361
Tssr70706 7 16213184 to 16213205 21 - TSS region transcription start site region 70706
Cpgi18362 7 16217998 to 16218438 440 CpG island CpG island 18362
Cpgi18363 7 16221882 to 16222265 383 CpG island CpG island 18363
Tssr70707 7 16222013 to 16222050 37 - TSS region transcription start site region 70707
Gm45409 7 16228900 to 16229151 251 + pseudogene predicted gene 45409
C5ar2 7 16234585 to 16244154 9569 - protein coding gene complement component 5a receptor 2
Gm26473 7 16234738 to 16234864 126 - snRNA gene predicted gene, 26473
Tssr70708 7 16235399 to 16235403 4 - TSS region transcription start site region 70708
Cpgi18364 7 16237158 to 16237408 250 CpG island CpG island 18364
Tssr70709 7 16239776 to 16239794 18 - TSS region transcription start site region 70709
Tssr70710 7 16239884 to 16239925 41 - TSS region transcription start site region 70710
Tssr70711 7 16240393 to 16240422 29 - TSS region transcription start site region 70711
Tssr70712 7 16244152 to 16244196 44 - TSS region transcription start site region 70712
D7Msu2 7 16244418 to 16244610 192 DNA segment DNA segment, Chr 7, Michigan State University 2
C5ar1 7 16246743 to 16259540 12797 - protein coding gene complement component 5a receptor 1
Tssr70713 7 16247475 to 16247479 4 - TSS region transcription start site region 70713
Tssr70714 7 16247772 to 16247787 15 - TSS region transcription start site region 70714
Cpgi18365 7 16248070 to 16248970 900 CpG island CpG island 18365
Tssr64593 7 16248413 to 16248462 49 + TSS region transcription start site region 64593
Tssr70715 7 16248505 to 16248516 11 - TSS region transcription start site region 70715
Tssr70716 7 16257525 to 16257528 3 - TSS region transcription start site region 70716
Tssr70717 7 16257860 to 16257894 34 - TSS region transcription start site region 70717
Tssr2081 7 16258042 to 16258066 24 + TSS region transcription start site region 2081
Tssr70718 7 16259185 to 16259201 16 - TSS region transcription start site region 70718
Cpgi18366 7 16271989 to 16274450 2461 CpG island CpG island 18366
Inafm1 7 16272013 to 16273617 1604 - protein coding gene InaF motif containing 1
Tssr70719 7 16273260 to 16273331 71 - TSS region transcription start site region 70719
Tssr70720 7 16273912 to 16273926 14 - TSS region transcription start site region 70720
Tssr70721 7 16273927 to 16273960 33 - TSS region transcription start site region 70721
Ccdc9 7 16274042 to 16286795 12753 - protein coding gene coiled-coil domain containing 9
Tssr70722 7 16285426 to 16285440 14 - TSS region transcription start site region 70722
Tssr70723 7 16285454 to 16285479 25 - TSS region transcription start site region 70723
Tssr70724 7 16285992 to 16286005 13 - TSS region transcription start site region 70724
Tssr70725 7 16286010 to 16286034 24 - TSS region transcription start site region 70725
Cpgi18367 7 16286171 to 16286909 738 CpG island CpG island 18367
Tssr70726 7 16286744 to 16286788 44 - TSS region transcription start site region 70726
Tssr70727 7 16286795 to 16286810 15 - TSS region transcription start site region 70727
Cpgi18368 7 16294862 to 16295976 1114 CpG island CpG island 18368
Tssr64594 7 16295119 to 16295153 34 + TSS region transcription start site region 64594
Tssr70728 7 16295438 to 16295452 14 - TSS region transcription start site region 70728
Tssr70729 7 16295459 to 16295486 27 - TSS region transcription start site region 70729
Tssr64595 7 16295838 to 16295857 19 + TSS region transcription start site region 64595
Cpgi18369 7 16296874 to 16297202 328 CpG island CpG island 18369
Cpgi18370 7 16299535 to 16300252 717 CpG island CpG island 18370
Tssr64596 7 16299887 to 16299904 17 + TSS region transcription start site region 64596
Tssr64597 7 16308330 to 16308361 31 + TSS region transcription start site region 64597
Bbc3 7 16308393 to 16318205 9812 + protein coding gene BCL2 binding component 3
Tssr64598 7 16308745 to 16308761 16 + TSS region transcription start site region 64598
Cpgi18371 7 16308750 to 16310995 2245 CpG island CpG island 18371
Tssr70730 7 16309340 to 16309370 30 - TSS region transcription start site region 70730
Tssr70731 7 16309378 to 16309390 12 - TSS region transcription start site region 70731
Tssr64599 7 16309577 to 16309641 64 + TSS region transcription start site region 64599
Tssr70732 7 16310071 to 16310098 27 - TSS region transcription start site region 70732
Tssr64600 7 16310412 to 16310444 32 + TSS region transcription start site region 64600
Tssr70733 7 16311312 to 16311335 23 - TSS region transcription start site region 70733
Cpgi18372 7 16311919 to 16313152 1233 CpG island CpG island 18372
Tssr70734 7 16312408 to 16312425 17 - TSS region transcription start site region 70734
Tssr70735 7 16312447 to 16312470 23 - TSS region transcription start site region 70735
Cpgi18373 7 16313547 to 16314512 965 CpG island CpG island 18373
Tssr64601 7 16313615 to 16313675 60 + TSS region transcription start site region 64601
Tssr70736 7 16313969 to 16313987 18 - TSS region transcription start site region 70736
Tssr70737 7 16314034 to 16314049 15 - TSS region transcription start site region 70737
Tssr70738 7 16314053 to 16314063 10 - TSS region transcription start site region 70738
Tssr64602 7 16315601 to 16315606 5 + TSS region transcription start site region 64602
Sae1 7 16320234 to 16387806 67572 - protein coding gene SUMO1 activating enzyme subunit 1
Tssr70739 7 16366451 to 16366462 11 - TSS region transcription start site region 70739
Tssr70740 7 16368692 to 16368702 10 - TSS region transcription start site region 70740
Tssr70741 7 16370384 to 16370417 33 - TSS region transcription start site region 70741
Tssr70742 7 16372192 to 16372221 29 - TSS region transcription start site region 70742
Tssr2082 7 16372228 to 16372246 18 - TSS region transcription start site region 2082
D7Ertd661e 7 16381538 to 16381746 208 DNA segment DNA segment, Chr 7, ERATO Doi 661, expressed
Cpgi18374 7 16387215 to 16388044 829 CpG island CpG island 18374
Tssr70743 7 16387757 to 16387773 16 - TSS region transcription start site region 70743
Tssr70744 7 16387778 to 16387788 10 - TSS region transcription start site region 70744
Tssr70745 7 16387791 to 16387840 49 - TSS region transcription start site region 70745
Tssr70746 7 16387853 to 16387858 5 - TSS region transcription start site region 70746
Cpgi18375 7 16399507 to 16401607 2100 CpG island CpG island 18375
Tssr64603 7 16399592 to 16399629 37 + TSS region transcription start site region 64603
Tssr64604 7 16400030 to 16400061 31 + TSS region transcription start site region 64604
Tssr64605 7 16400065 to 16400078 13 + TSS region transcription start site region 64605
Tssr64606 7 16400107 to 16400118 11 + TSS region transcription start site region 64606
Tssr64607 7 16400257 to 16400301 44 + TSS region transcription start site region 64607
Tssr64608 7 16400304 to 16400331 27 + TSS region transcription start site region 64608
Tssr2083 7 16400893 to 16400932 39 + TSS region transcription start site region 2083
Zc3h4 7 16400910 to 16437696 36786 + protein coding gene zinc finger CCCH-type containing 4
Tssr70747 7 16401132 to 16401155 23 - TSS region transcription start site region 70747
Tssr64609 7 16401187 to 16401233 46 + TSS region transcription start site region 64609
Tssr64610 7 16401268 to 16401283 15 + TSS region transcription start site region 64610
Cpgi18376 7 16402079 to 16402396 317 CpG island CpG island 18376
Gm45508 7 16403964 to 16404262 298 - unclassified gene predicted gene 45508
Gm45509 7 16406755 to 16407983 1228 - lincRNA gene predicted gene 45509
5430402M21Rik 7 16412062 to 16413694 1632 unclassified gene RIKEN cDNA 5430402M21 gene
Gm45510 7 16413908 to 16416621 2713 - antisense lncRNA gene predicted gene 45510
Tssr64611 7 16415671 to 16415675 4 + TSS region transcription start site region 64611
Tssr64612 7 16420953 to 16420996 43 + TSS region transcription start site region 64612
Cpgi18377 7 16452774 to 16453537 763 CpG island CpG island 18377
Tmem160 7 16452779 to 16455490 2711 + protein coding gene transmembrane protein 160
Tssr64613 7 16452927 to 16452968 41 + TSS region transcription start site region 64613
Tssr64614 7 16453024 to 16453031 7 + TSS region transcription start site region 64614
Cpgi18378 7 16455009 to 16455287 278 CpG island CpG island 18378
Npas1 7 16455718 to 16476816 21098 - protein coding gene neuronal PAS domain protein 1
Cpgi18379 7 16460549 to 16460924 375 CpG island CpG island 18379
Cpgi18380 7 16463262 to 16463526 264 CpG island CpG island 18380
n-R5s151 7 16471813 to 16471931 118 + rRNA gene nuclear encoded rRNA 5S 151
Cpgi18381 7 16474473 to 16474947 474 CpG island CpG island 18381
Cpgi18382 7 16475210 to 16476968 1758 CpG island CpG island 18382
Tssr70748 7 16476765 to 16476792 27 - TSS region transcription start site region 70748
Arhgap35 7 16494473 to 16615244 120771 - protein coding gene Rho GTPase activating protein 35
Tssr70749 7 16494727 to 16494731 4 - TSS region transcription start site region 70749
Tssr70750 7 16497803 to 16497820 17 - TSS region transcription start site region 70750
Gm17826 7 16498732 to 16499529 797 + pseudogene predicted gene, 17826
Tssr70751 7 16500327 to 16500330 3 - TSS region transcription start site region 70751
Gm17981 7 16514406 to 16515093 687 - pseudogene predicted gene, 17981
Tssr70752 7 16604500 to 16604506 6 - TSS region transcription start site region 70752
D7Mit342 7 16606254 to 16606419 165 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 342
Cpgi18383 7 16613816 to 16615782 1966 CpG island CpG island 18383
Gm29443 7 16613824 to 16632643 18819 + antisense lncRNA gene predicted gene 29443
Tssr70753 7 16614548 to 16614606 58 - TSS region transcription start site region 70753
Tssr70754 7 16614613 to 16614623 10 - TSS region transcription start site region 70754
Tssr70755 7 16614670 to 16614711 41 - TSS region transcription start site region 70755
Tssr70756 7 16614778 to 16614788 10 - TSS region transcription start site region 70756
Tssr70757 7 16614792 to 16614805 13 - TSS region transcription start site region 70757
Tssr70758 7 16614849 to 16614860 11 - TSS region transcription start site region 70758
Tssr70759 7 16614881 to 16614891 10 - TSS region transcription start site region 70759
Tssr70760 7 16614958 to 16615021 63 - TSS region transcription start site region 70760
Tssr70761 7 16615054 to 16615067 13 - TSS region transcription start site region 70761
Tssr70762 7 16615073 to 16615138 65 - TSS region transcription start site region 70762
Tssr70763 7 16615266 to 16615276 10 - TSS region transcription start site region 70763
Tssr64615 7 16615607 to 16615620 13 + TSS region transcription start site region 64615
Gm44589 7 16616351 to 16616465 114 + pseudogene predicted gene 44589
Gm29442 7 16618627 to 16619832 1205 - lincRNA gene predicted gene 29442
Cpgi18384 7 16618924 to 16619254 330 CpG island CpG island 18384
Tssr70764 7 16619872 to 16619873 1 - TSS region transcription start site region 70764
Gm24708 7 16624575 to 16624677 102 - snRNA gene predicted gene, 24708
Gm29725 7 16647383 to 16647789 406 - pseudogene predicted gene, 29725
Ceacam-ps1 7 16649030 to 16657478 8448 - pseudogene carcinoembryonic antigen-related cell adhesion molecule pseudogene 1
Tssr70765 7 16657496 to 16657500 4 - TSS region transcription start site region 70765
Ceacam15 7 16671331 to 16675705 4374 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 15
Tssr70766 7 16675617 to 16675623 6 - TSS region transcription start site region 70766
Gm8209 7 16693817 to 16694369 552 - pseudogene predicted gene 8209
Tssr64616 7 16700818 to 16700826 8 + TSS region transcription start site region 64616
Tssr64617 7 16714851 to 16714855 4 + TSS region transcription start site region 64617
Gm5586 7 16719116 to 16719910 794 - pseudogene predicted gene 5586
Tssr70767 7 16719925 to 16719940 15 - TSS region transcription start site region 70767
Ceacam9 7 16721929 to 16726110 4181 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 9
Tssr64618 7 16721954 to 16721959 5 + TSS region transcription start site region 64618
Cpgi18385 7 16723689 to 16723849 160 CpG island CpG island 18385
Tssr64619 7 16733665 to 16733679 14 + TSS region transcription start site region 64619
Tssr64620 7 16734406 to 16734408 2 + TSS region transcription start site region 64620
Cpgi18386 7 16738270 to 16738757 487 CpG island CpG island 18386
Ap2s1 7 16738410 to 16749294 10884 + protein coding gene adaptor-related protein complex 2, sigma 1 subunit
Tssr64621 7 16738436 to 16738476 40 + TSS region transcription start site region 64621
Tssr64622 7 16749092 to 16749104 12 + TSS region transcription start site region 64622
Cpgi18387 7 16771924 to 16772169 245 CpG island CpG island 18387
Cpgi18388 7 16781012 to 16782647 1635 CpG island CpG island 18388
Tssr64623 7 16781341 to 16781352 11 + TSS region transcription start site region 64623
Slc1a5 7 16781345 to 16798274 16929 + protein coding gene solute carrier family 1 (neutral amino acid transporter), member 5
Tssr64624 7 16781359 to 16781376 17 + TSS region transcription start site region 64624
Tssr64625 7 16782303 to 16782391 88 + TSS region transcription start site region 64625
9530015I06Rik 7 16789016 to 16789324 308 unclassified gene RIKEN cDNA 9530015I06 gene
Tssr64626 7 16792525 to 16792550 25 + TSS region transcription start site region 64626
Tssr64627 7 16793530 to 16793541 11 + TSS region transcription start site region 64627
Cpgi18389 7 16795710 to 16796090 380 CpG island CpG island 18389
Fkrp 7 16809246 to 16816732 7486 - protein coding gene fukutin related protein
Cpgi18390 7 16810452 to 16811991 1539 CpG island CpG island 18390
Tssr70768 7 16815472 to 16815481 9 - TSS region transcription start site region 70768
Cpgi18391 7 16815811 to 16817220 1409 CpG island CpG island 18391
Strn4 7 16815889 to 16840931 25042 + protein coding gene striatin, calmodulin binding protein 4
Tssr64628 7 16816273 to 16816286 13 + TSS region transcription start site region 64628
Tssr64629 7 16816299 to 16816361 62 + TSS region transcription start site region 64629
Tssr70769 7 16816731 to 16816744 13 - TSS region transcription start site region 70769
Tssr64630 7 16830840 to 16830861 21 + TSS region transcription start site region 64630
Tssr64631 7 16830862 to 16830871 9 + TSS region transcription start site region 64631
Tssr64632 7 16830876 to 16830883 7 + TSS region transcription start site region 64632
Tssr64633 7 16838124 to 16838141 17 + TSS region transcription start site region 64633
Tssr64634 7 16838152 to 16838163 11 + TSS region transcription start site region 64634
Tssr64635 7 16838176 to 16838193 17 + TSS region transcription start site region 64635
Cpgi18392 7 16842584 to 16843883 1299 CpG island CpG island 18392
Tssr64636 7 16842896 to 16842954 58 + TSS region transcription start site region 64636
Prkd2 7 16842902 to 16870461 27559 + protein coding gene protein kinase D2
Tssr64637 7 16842956 to 16842963 7 + TSS region transcription start site region 64637
Tssr64638 7 16842970 to 16843016 46 + TSS region transcription start site region 64638
Tssr64639 7 16843021 to 16843040 19 + TSS region transcription start site region 64639
Tssr64640 7 16843049 to 16843077 28 + TSS region transcription start site region 64640
Tssr64641 7 16843086 to 16843103 17 + TSS region transcription start site region 64641
Tssr64642 7 16843175 to 16843211 36 + TSS region transcription start site region 64642
Tssr64643 7 16844138 to 16844143 5 + TSS region transcription start site region 64643
Tssr64644 7 16845811 to 16845826 15 + TSS region transcription start site region 64644
Cpgi18393 7 16847573 to 16847797 224 CpG island CpG island 18393
Cpgi18394 7 16848705 to 16849046 341 CpG island CpG island 18394
Cpgi18395 7 16858292 to 16858633 341 CpG island CpG island 18395
Cpgi18396 7 16865550 to 16865922 372 CpG island CpG island 18396
Cpgi18397 7 16869506 to 16870062 556 CpG island CpG island 18397
9330104G04Rik 7 16871347 to 16874886 3539 - lincRNA gene RIKEN cDNA 9330104G04 gene