Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:15428250-16244679

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obox4-ps27 7 15431617 to 15433379 1762 + pseudogene oocyte specific homeobox 4, pseudogene 27
Obox4-ps28 7 15442953 to 15444715 1762 + pseudogene oocyte specific homeobox 4, pseudogene 28
Obox4-ps29 7 15454323 to 15456033 1710 + pseudogene oocyte specific homeobox 4, pseudogene 29
Obox3-ps6 7 15480174 to 15481781 1607 - pseudogene oocyte specific homeobox 3, pseudogene 6
Obox4-ps30 7 15501820 to 15502548 728 + pseudogene oocyte specific homeobox 4, pseudogene 30
Ranbp2-ps9 7 15528046 to 15528427 381 - pseudogene RAN binding protein 2, pseudogene 9
Obox1 7 15547257 to 15556846 9589 + protein coding gene oocyte specific homeobox 1
Ranbp2-ps10 7 15566485 to 15566869 384 - pseudogene RAN binding protein 2, pseudogene 10
Obox4-ps31 7 15589653 to 15591360 1707 + pseudogene oocyte specific homeobox 4, pseudogene 31
Gm25354 7 15593231 to 15593335 104 + snRNA gene predicted gene, 25354
Obox3 7 15625306 to 15639777 14471 - protein coding gene oocyte specific homeobox 3
Obox4-ps32 7 15642188 to 15643208 1020 - pseudogene oocyte specific homeobox 4, pseudogene 32
Gtpbp4-ps6 7 15653333 to 15653624 291 - pseudogene GTP binding protein 4, pseudogene 6
Obox4-ps33 7 15691650 to 15693360 1710 + pseudogene oocyte specific homeobox 4, pseudogene 33
Gm23714 7 15695213 to 15695317 104 + snRNA gene predicted gene, 23714
Obox4-ps34 7 15719766 to 15720132 366 + pseudogene oocyte specific homeobox 4, pseudogene 34
Ranbp2-ps11 7 15725926 to 15726312 386 - pseudogene RAN binding protein 2, pseudogene 11
Obox5 7 15750370 to 15759274 8904 + protein coding gene oocyte specific homeobox 5
Ranbp2-ps12 7 15766814 to 15767199 385 - pseudogene RAN binding protein 2, pseudogene 12
Gtpbp4-ps7 7 15787864 to 15788160 296 - pseudogene GTP binding protein 4, pseudogene 7
Obox4-ps35 7 15820167 to 15825815 5648 - pseudogene oocyte specific homeobox 4, pseudogene 35
Obox6 7 15833250 to 15839679 6429 - protein coding gene oocyte specific homeobox 6
Crx 7 15865947 to 15879955 14008 - protein coding gene cone-rod homeobox
Tssr70676 7 15873187 to 15873194 7 - TSS region transcription start site region 70676
Tssr70677 7 15879880 to 15879900 20 - TSS region transcription start site region 70677
Tssr64557 7 15881621 to 15881630 9 + TSS region transcription start site region 64557
Tssr64558 7 15881646 to 15881668 22 + TSS region transcription start site region 64558
Tssr64559 7 15881681 to 15881686 5 + TSS region transcription start site region 64559
Tssr64560 7 15881690 to 15881693 3 + TSS region transcription start site region 64560
Tssr64561 7 15881696 to 15881715 19 + TSS region transcription start site region 64561
116J6.1 7 15881700 to 15881921 221 DNA segment DNA segment, 116J6.1
Crxos 7 15882617 to 15904020 21403 + protein coding gene cone-rod homeobox, opposite strand
Tssr64562 7 15885143 to 15885155 12 + TSS region transcription start site region 64562
Tssr64563 7 15886164 to 15886173 9 + TSS region transcription start site region 64563
Tssr64564 7 15896165 to 15896176 11 + TSS region transcription start site region 64564
Tssr64565 7 15901656 to 15901665 9 + TSS region transcription start site region 64565
Ass-ps1 7 15906681 to 15907592 911 + pseudogene argininosuccinate synthetase pseudogene 1
Selenow 7 15917208 to 15922371 5163 - protein coding gene selenoprotein W
Tssr70678 7 15917337 to 15917433 96 - TSS region transcription start site region 70678
Tssr64566 7 15917349 to 15917382 33 + TSS region transcription start site region 64566
Tssr70679 7 15920099 to 15920114 15 - TSS region transcription start site region 70679
Tssr70680 7 15920667 to 15920692 25 - TSS region transcription start site region 70680
Tssr70681 7 15920778 to 15920791 13 - TSS region transcription start site region 70681
Cpgi18341 7 15921933 to 15922699 766 CpG island CpG island 18341
Tssr70682 7 15922302 to 15922313 11 - TSS region transcription start site region 70682
Tssr70683 7 15922335 to 15922357 22 - TSS region transcription start site region 70683
Tssr70684 7 15922361 to 15922378 17 - TSS region transcription start site region 70684
Nop53 7 15937835 to 15946108 8273 - protein coding gene NOP53 ribosome biogenesis factor
Snord23 7 15938762 to 15938860 98 - snoRNA gene small nucleolar RNA, C/D box 23
Cpgi18342 7 15945566 to 15946252 686 CpG island CpG island 18342
Tssr70685 7 15945784 to 15945808 24 - TSS region transcription start site region 70685
Tssr70686 7 15946023 to 15946034 11 - TSS region transcription start site region 70686
Tssr70687 7 15946057 to 15946069 12 - TSS region transcription start site region 70687
Tssr70688 7 15946070 to 15946105 35 - TSS region transcription start site region 70688
Gm24576 7 15946248 to 15946495 247 + lncRNA gene predicted gene, 24576
Ehd2 7 15946963 to 15967535 20572 - protein coding gene EH-domain containing 2
Cpgi18343 7 15948412 to 15948826 414 CpG island CpG island 18343
Tssr70689 7 15950027 to 15950043 16 - TSS region transcription start site region 70689
Tssr70690 7 15950088 to 15950092 4 - TSS region transcription start site region 70690
Tssr70691 7 15950282 to 15950321 39 - TSS region transcription start site region 70691
Cpgi18344 7 15950383 to 15950745 362 CpG island CpG island 18344
Cpgi18345 7 15957460 to 15957937 477 CpG island CpG island 18345
Tssr70692 7 15959552 to 15959566 14 - TSS region transcription start site region 70692
Tssr70693 7 15959784 to 15959795 11 - TSS region transcription start site region 70693
Tssr70694 7 15959818 to 15959832 14 - TSS region transcription start site region 70694
Cpgi18346 7 15963936 to 15964292 356 CpG island CpG island 18346
Tssr70695 7 15964372 to 15964427 55 - TSS region transcription start site region 70695
Cpgi18347 7 15967335 to 15967637 302 CpG island CpG island 18347
Tssr70696 7 15967470 to 15967484 14 - TSS region transcription start site region 70696
Bicra 7 15970672 to 16047921 77249 - protein coding gene BRD4 interacting chromatin remodeling complex associated protein
Cpgi18348 7 15971940 to 15972739 799 CpG island CpG island 18348
Gm38948 7 15980710 to 15984800 4090 + lincRNA gene predicted gene, 38948
Tssr64567 7 16004684 to 16004696 12 + TSS region transcription start site region 64567
Tssr70697 7 16018238 to 16018251 13 - TSS region transcription start site region 70697
Tssr70698 7 16044493 to 16044498 5 - TSS region transcription start site region 70698
Cpgi18349 7 16046523 to 16049093 2570 CpG island CpG island 18349
Gm32059 7 16046582 to 16047666 1084 + lncRNA gene predicted gene, 32059
Tssr64568 7 16046602 to 16046617 15 + TSS region transcription start site region 64568
Tssr70699 7 16047638 to 16047643 5 - TSS region transcription start site region 70699
Tssr70700 7 16047912 to 16047947 35 - TSS region transcription start site region 70700
Tssr70701 7 16048053 to 16048082 29 - TSS region transcription start site region 70701
Tssr70702 7 16048111 to 16048123 12 - TSS region transcription start site region 70702
Tssr64569 7 16048380 to 16048447 67 + TSS region transcription start site region 64569
2010004M13Rik 7 16048444 to 16049057 613 unclassified gene RIKEN cDNA 2010004M13 gene
Cpgi18350 7 16052709 to 16053104 395 CpG island CpG island 18350
Tssr70703 7 16052807 to 16052827 20 - TSS region transcription start site region 70703
Cpgi18351 7 16061307 to 16062278 971 CpG island CpG island 18351
Tssr64570 7 16061780 to 16061793 13 + TSS region transcription start site region 64570
Tssr64571 7 16061810 to 16061820 10 + TSS region transcription start site region 64571
Zfp541 7 16061814 to 16096334 34520 + protein coding gene zinc finger protein 541
Tssr64572 7 16061840 to 16061867 27 + TSS region transcription start site region 64572
Tssr64573 7 16061868 to 16061886 18 + TSS region transcription start site region 64573
Tssr64574 7 16061901 to 16061913 12 + TSS region transcription start site region 64574
Tssr64575 7 16062739 to 16062743 4 + TSS region transcription start site region 64575
Cpgi18352 7 16098098 to 16099117 1019 CpG island CpG island 18352
Napa 7 16098458 to 16117975 19517 + protein coding gene N-ethylmaleimide sensitive fusion protein attachment protein alpha
Tssr64576 7 16098574 to 16098585 11 + TSS region transcription start site region 64576
Tssr64577 7 16098595 to 16098672 77 + TSS region transcription start site region 64577
Tssr64578 7 16116719 to 16116740 21 + TSS region transcription start site region 64578
Cpgi18353 7 16119836 to 16120305 469 CpG island CpG island 18353
Tssr64579 7 16119868 to 16119907 39 + TSS region transcription start site region 64579
Kptn 7 16119895 to 16127516 7621 + protein coding gene kaptin
Cpgi18354 7 16129514 to 16129710 196 CpG island CpG island 18354
Tssr64580 7 16129756 to 16129845 89 + TSS region transcription start site region 64580
Slc8a2 7 16129826 to 16161063 31237 + protein coding gene solute carrier family 8 (sodium/calcium exchanger), member 2
Tssr64581 7 16130145 to 16130170 25 + TSS region transcription start site region 64581
Tssr64582 7 16130178 to 16130189 11 + TSS region transcription start site region 64582
Tssr64583 7 16130252 to 16130269 17 + TSS region transcription start site region 64583
Cpgi18355 7 16130257 to 16130816 559 CpG island CpG island 18355
Tssr64584 7 16130271 to 16130283 12 + TSS region transcription start site region 64584
Tssr64585 7 16130285 to 16130333 48 + TSS region transcription start site region 64585
Tssr64586 7 16130340 to 16130366 26 + TSS region transcription start site region 64586
Cpgi18356 7 16140430 to 16141211 781 CpG island CpG island 18356
Cpgi18357 7 16144769 to 16145603 834 CpG island CpG island 18357
C030044M21Rik 7 16146161 to 16147386 1225 unclassified gene RIKEN cDNA C030044M21 gene
Cpgi18358 7 16146589 to 16146870 281 CpG island CpG island 18358
Cpgi18359 7 16158668 to 16159310 642 CpG island CpG island 18359
Tssr64587 7 16160184 to 16160194 10 + TSS region transcription start site region 64587
Tssr64588 7 16160195 to 16160210 15 + TSS region transcription start site region 64588
Cpgi18360 7 16175011 to 16175831 820 CpG island CpG island 18360
Tssr64589 7 16175085 to 16175104 19 + TSS region transcription start site region 64589
Meis3 7 16175096 to 16186510 11414 + protein coding gene Meis homeobox 3
Tssr64590 7 16175342 to 16175356 14 + TSS region transcription start site region 64590
Tssr64591 7 16175358 to 16175438 80 + TSS region transcription start site region 64591
Tssr64592 7 16175453 to 16175460 7 + TSS region transcription start site region 64592
Dhx34 7 16197220 to 16222079 24859 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 34
Tssr70704 7 16204126 to 16204133 7 - TSS region transcription start site region 70704
Tssr70705 7 16204154 to 16204213 59 - TSS region transcription start site region 70705
Tssr2080 7 16204247 to 16204252 5 - TSS region transcription start site region 2080
Cpgi18361 7 16212849 to 16213036 187 CpG island CpG island 18361
Tssr70706 7 16213184 to 16213205 21 - TSS region transcription start site region 70706
Cpgi18362 7 16217998 to 16218438 440 CpG island CpG island 18362
Cpgi18363 7 16221882 to 16222265 383 CpG island CpG island 18363
Tssr70707 7 16222013 to 16222050 37 - TSS region transcription start site region 70707
Gm45409 7 16228900 to 16229151 251 + pseudogene predicted gene 45409
C5ar2 7 16234585 to 16244154 9569 - protein coding gene complement component 5a receptor 2
Gm26473 7 16234738 to 16234864 126 - snRNA gene predicted gene, 26473
Tssr70708 7 16235399 to 16235403 4 - TSS region transcription start site region 70708
Cpgi18364 7 16237158 to 16237408 250 CpG island CpG island 18364
Tssr70709 7 16239776 to 16239794 18 - TSS region transcription start site region 70709
Tssr70710 7 16239884 to 16239925 41 - TSS region transcription start site region 70710
Tssr70711 7 16240393 to 16240422 29 - TSS region transcription start site region 70711
Tssr70712 7 16244152 to 16244196 44 - TSS region transcription start site region 70712
D7Msu2 7 16244418 to 16244610 192 DNA segment DNA segment, Chr 7, Michigan State University 2