Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:144276758-144753729

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shank2 7 144001928 to 144424494 422566 + protein coding gene SH3 and multiple ankyrin repeat domains 2
Cpgi19995 7 144284161 to 144285094 933 CpG island CpG island 19995
Tssr70337 7 144284388 to 144284399 11 + TSS region transcription start site region 70337
Tssr2474 7 144284412 to 144284424 12 + TSS region transcription start site region 2474
Tssr70338 7 144284464 to 144284506 42 + TSS region transcription start site region 70338
Tssr70339 7 144321061 to 144321089 28 + TSS region transcription start site region 70339
Tssr70340 7 144321119 to 144321173 54 + TSS region transcription start site region 70340
Tssr70341 7 144321383 to 144321437 54 + TSS region transcription start site region 70341
D7Mit47 7 144338215 to 144338424 209 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 47
Gm14372 7 144368048 to 144406933 38885 - antisense lncRNA gene predicted gene 14372
Tssr2475 7 144406904 to 144406911 7 - TSS region transcription start site region 2475
Tssr75987 7 144406929 to 144406948 19 - TSS region transcription start site region 75987
Tssr70342 7 144407110 to 144407131 21 + TSS region transcription start site region 70342
Gm34621 7 144415144 to 144419277 4133 - lncRNA gene predicted gene, 34621
Tssr70343 7 144417810 to 144417826 16 + TSS region transcription start site region 70343
Tssr70344 7 144422939 to 144422959 20 + TSS region transcription start site region 70344
Tssr70345 7 144422972 to 144422995 23 + TSS region transcription start site region 70345
Tssr70346 7 144424117 to 144424121 4 + TSS region transcription start site region 70346
Gm34561 7 144426132 to 144431330 5198 - lncRNA gene predicted gene, 34561
Cttn 7 144435733 to 144471009 35276 - protein coding gene cortactin
Tssr75988 7 144449767 to 144449785 18 - TSS region transcription start site region 75988
Gm14376 7 144469533 to 144469993 460 - sense intronic lncRNA gene predicted gene 14376
Cpgi19996 7 144470070 to 144471029 959 CpG island CpG island 19996
Tssr75989 7 144470714 to 144470770 56 - TSS region transcription start site region 75989
Ppfia1 7 144476758 to 144553729 76971 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Tssr75990 7 144520671 to 144520688 17 - TSS region transcription start site region 75990
Gm35626 7 144552798 to 144554487 1689 + pseudogene predicted gene, 35626
Cpgi19997 7 144553198 to 144554290 1092 CpG island CpG island 19997
Tssr75991 7 144553639 to 144553650 11 - TSS region transcription start site region 75991
Tssr75992 7 144553657 to 144553757 100 - TSS region transcription start site region 75992
Tssr70347 7 144553940 to 144553949 9 + TSS region transcription start site region 70347
Faddos 7 144567355 to 144581512 14157 + antisense lncRNA gene Fas (TNFRSF6)-associated via death domain, opposite strand
Tssr75993 7 144569900 to 144569903 3 - TSS region transcription start site region 75993
Fadd 7 144578323 to 144582436 4113 - protein coding gene Fas (TNFRSF6)-associated via death domain
Cpgi19998 7 144581640 to 144582734 1094 CpG island CpG island 19998
Tssr70348 7 144582119 to 144582174 55 + TSS region transcription start site region 70348
Tssr75994 7 144582392 to 144582454 62 - TSS region transcription start site region 75994
Tssr75995 7 144582457 to 144582474 17 - TSS region transcription start site region 75995
Ano1 7 144588549 to 144751974 163425 - protein coding gene anoctamin 1, calcium activated chloride channel
D7Mit293 7 144602987 to 144603107 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 293
D7Mit223 7 144609872 to 144609977 105 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 223
Cpgi19999 7 144677902 to 144678074 172 CpG island CpG island 19999
Cpgi20000 7 144678280 to 144678988 708 CpG island CpG island 20000
Tssr75996 7 144678775 to 144678839 64 - TSS region transcription start site region 75996
Tssr75997 7 144678851 to 144678908 57 - TSS region transcription start site region 75997
Cpgi20001 7 144738191 to 144738760 569 CpG island CpG island 20001
Tssr75998 7 144738492 to 144738508 16 - TSS region transcription start site region 75998
Tssr75999 7 144738520 to 144738597 77 - TSS region transcription start site region 75999
D930030F02Rik 7 144741614 to 144770512 28898 + lncRNA gene RIKEN cDNA D930030F02 gene
Tssr70349 7 144742057 to 144742069 12 + TSS region transcription start site region 70349
Tssr70350 7 144742075 to 144742083 8 + TSS region transcription start site region 70350
Tssr70351 7 144742087 to 144742099 12 + TSS region transcription start site region 70351
Tssr70352 7 144742109 to 144742116 7 + TSS region transcription start site region 70352
Gm44930 7 144742113 to 144750008 7895 + antisense lncRNA gene predicted gene 44930
Tssr76000 7 144751968 to 144752007 39 - TSS region transcription start site region 76000
Tssr76001 7 144752024 to 144752027 3 - TSS region transcription start site region 76001