Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:143790513-144560527

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D7Mit140 7 143791380 to 143791512 132 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 140
Nadsyn1 7 143795584 to 143822849 27265 - protein coding gene NAD synthetase 1
Cpgi19991 7 143822548 to 143823233 685 CpG island CpG island 19991
Tssr75986 7 143822793 to 143822857 64 - TSS region transcription start site region 75986
Tssr70307 7 143823115 to 143823128 13 + TSS region transcription start site region 70307
Tssr70308 7 143823135 to 143823151 16 + TSS region transcription start site region 70308
Dhcr7 7 143823167 to 143848410 25243 + protein coding gene 7-dehydrocholesterol reductase
Tssr70309 7 143823396 to 143823399 3 + TSS region transcription start site region 70309
Tssr70310 7 143829647 to 143829683 36 + TSS region transcription start site region 70310
Cpgi19992 7 143829869 to 143830453 584 CpG island CpG island 19992
Tssr70311 7 143830178 to 143830189 11 + TSS region transcription start site region 70311
Tssr70312 7 143830204 to 143830249 45 + TSS region transcription start site region 70312
Tssr70313 7 143836623 to 143836631 8 + TSS region transcription start site region 70313
Tssr70314 7 143841220 to 143841235 15 + TSS region transcription start site region 70314
Tssr70315 7 143841239 to 143841254 15 + TSS region transcription start site region 70315
Tssr70316 7 143847350 to 143847379 29 + TSS region transcription start site region 70316
Tssr70317 7 143847877 to 143847904 27 + TSS region transcription start site region 70317
Acte1 7 143866838 to 143900046 33208 + protein coding gene actin, epsilon 1
Tssr2472 7 143866885 to 143866893 8 + TSS region transcription start site region 2472
Mir6404 7 143933115 to 143933208 93 + miRNA gene microRNA 6404
Gm34445 7 143949273 to 143956363 7090 - lncRNA gene predicted gene, 34445
Cpgi19993 7 143977655 to 143979602 1947 CpG island CpG island 19993
Tssr70318 7 143977655 to 143977684 29 + TSS region transcription start site region 70318
Tssr70319 7 143978097 to 143978140 43 + TSS region transcription start site region 70319
Tssr70320 7 143978317 to 143978331 14 + TSS region transcription start site region 70320
Tssr70321 7 143978428 to 143978444 16 + TSS region transcription start site region 70321
Tssr70322 7 143978928 to 143978965 37 + TSS region transcription start site region 70322
Tssr70323 7 143979415 to 143979432 17 + TSS region transcription start site region 70323
Shank2 7 144001928 to 144424494 422566 + protein coding gene SH3 and multiple ankyrin repeat domains 2
Mir3105 7 144009254 to 144009338 84 + miRNA gene microRNA 3105
Gm46006 7 144019070 to 144026560 7490 - lncRNA gene predicted gene, 46006
D7Mit177 7 144061043 to 144061182 139 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 177
Gm44999 7 144109593 to 144111085 1492 - unclassified gene predicted gene 44999
Tssr70324 7 144130464 to 144130467 3 + TSS region transcription start site region 70324
Tssr70325 7 144132895 to 144132904 9 + TSS region transcription start site region 70325
Tssr70326 7 144175255 to 144175272 17 + TSS region transcription start site region 70326
Cpgi19994 7 144175448 to 144176093 645 CpG island CpG island 19994
Tssr70327 7 144175452 to 144175486 34 + TSS region transcription start site region 70327
Tssr70328 7 144175491 to 144175506 15 + TSS region transcription start site region 70328
Tssr70329 7 144175513 to 144175527 14 + TSS region transcription start site region 70329
Tssr70330 7 144175628 to 144175646 18 + TSS region transcription start site region 70330
Tssr70331 7 144175680 to 144175702 22 + TSS region transcription start site region 70331
Tssr70332 7 144175709 to 144175720 11 + TSS region transcription start site region 70332
D7Mit15 7 144214685 to 144214825 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 15
Tssr70333 7 144238690 to 144238705 15 + TSS region transcription start site region 70333
Tssr70334 7 144238718 to 144238730 12 + TSS region transcription start site region 70334
Tssr2473 7 144240930 to 144240936 6 + TSS region transcription start site region 2473
Tssr70335 7 144264078 to 144264091 13 + TSS region transcription start site region 70335
Tssr70336 7 144264105 to 144264112 7 + TSS region transcription start site region 70336
Cpgi19995 7 144284161 to 144285094 933 CpG island CpG island 19995
Tssr70337 7 144284388 to 144284399 11 + TSS region transcription start site region 70337
Tssr2474 7 144284412 to 144284424 12 + TSS region transcription start site region 2474
Tssr70338 7 144284464 to 144284506 42 + TSS region transcription start site region 70338
Tssr70339 7 144321061 to 144321089 28 + TSS region transcription start site region 70339
Tssr70340 7 144321119 to 144321173 54 + TSS region transcription start site region 70340
Tssr70341 7 144321383 to 144321437 54 + TSS region transcription start site region 70341
D7Mit47 7 144338215 to 144338424 209 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 47
Gm14372 7 144368048 to 144406933 38885 - antisense lncRNA gene predicted gene 14372
Tssr2475 7 144406904 to 144406911 7 - TSS region transcription start site region 2475
Tssr75987 7 144406929 to 144406948 19 - TSS region transcription start site region 75987
Tssr70342 7 144407110 to 144407131 21 + TSS region transcription start site region 70342
Gm34621 7 144415144 to 144419277 4133 - lncRNA gene predicted gene, 34621
Tssr70343 7 144417810 to 144417826 16 + TSS region transcription start site region 70343
Tssr70344 7 144422939 to 144422959 20 + TSS region transcription start site region 70344
Tssr70345 7 144422972 to 144422995 23 + TSS region transcription start site region 70345
Tssr70346 7 144424117 to 144424121 4 + TSS region transcription start site region 70346
Gm34561 7 144426132 to 144431330 5198 - lncRNA gene predicted gene, 34561
Cttn 7 144435733 to 144471009 35276 - protein coding gene cortactin
Tssr75988 7 144449767 to 144449785 18 - TSS region transcription start site region 75988
Gm14376 7 144469533 to 144469993 460 - sense intronic lncRNA gene predicted gene 14376
Cpgi19996 7 144470070 to 144471029 959 CpG island CpG island 19996
Tssr75989 7 144470714 to 144470770 56 - TSS region transcription start site region 75989
Ppfia1 7 144476758 to 144553729 76971 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Tssr75990 7 144520671 to 144520688 17 - TSS region transcription start site region 75990
Gm35626 7 144552798 to 144554487 1689 + pseudogene predicted gene, 35626
Cpgi19997 7 144553198 to 144554290 1092 CpG island CpG island 19997
Tssr75991 7 144553639 to 144553650 11 - TSS region transcription start site region 75991
Tssr75992 7 144553657 to 144553757 100 - TSS region transcription start site region 75992
Tssr70347 7 144553940 to 144553949 9 + TSS region transcription start site region 70347