Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:143273490-143643517

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnq1 7 143106742 to 143427050 320308 + protein coding gene potassium voltage-gated channel, subfamily Q, member 1
Kcnq1ot1 7 143213111 to 143296547 83436 - antisense lncRNA gene KCNQ1 overlapping transcript 1
Gm27803 7 143273566 to 143273684 118 + unclassified non-coding RNA gene predicted gene, 27803
Tssr75931 7 143273770 to 143273775 5 - TSS region transcription start site region 75931
Gm27539 7 143293932 to 143294155 223 + unclassified non-coding RNA gene predicted gene, 27539
Cpgi19976 7 143295116 to 143296665 1549 CpG island CpG island 19976
Tssr75932 7 143296514 to 143296525 11 - TSS region transcription start site region 75932
Tssr75933 7 143296529 to 143296566 37 - TSS region transcription start site region 75933
Gm37364 7 143297698 to 143301617 3919 + unclassified gene predicted gene, 37364
Tssr75934 7 143299847 to 143299849 2 - TSS region transcription start site region 75934
Tssr70287 7 143306364 to 143306367 3 + TSS region transcription start site region 70287
4933417O13Rik 7 143322772 to 143330650 7878 - antisense lncRNA gene RIKEN cDNA 4933417O13 gene
Cpgi19977 7 143329572 to 143329787 215 CpG island CpG island 19977
Gm38095 7 143344437 to 143345838 1401 + unclassified gene predicted gene, 38095
Gm38065 7 143350421 to 143353912 3491 - unclassified gene predicted gene, 38065
Tssr75935 7 143423756 to 143423760 4 - TSS region transcription start site region 75935
Cpgi19978 7 143428502 to 143428740 238 CpG island CpG island 19978
Cpgi19979 7 143437493 to 143438766 1273 CpG island CpG island 19979
Cpgi19980 7 143445168 to 143446200 1032 CpG island CpG island 19980
Gm27901 7 143447605 to 143447665 60 + unclassified non-coding RNA gene predicted gene, 27901
Cdkn1c 7 143458339 to 143461050 2711 - protein coding gene cyclin-dependent kinase inhibitor 1C (P57)
Tssr75936 7 143458490 to 143458517 27 - TSS region transcription start site region 75936
Tssr75937 7 143458579 to 143458620 41 - TSS region transcription start site region 75937
Tssr70288 7 143458699 to 143458728 29 + TSS region transcription start site region 70288
Tssr75938 7 143458772 to 143458794 22 - TSS region transcription start site region 75938
Tssr75939 7 143458804 to 143458821 17 - TSS region transcription start site region 75939
Tssr75940 7 143458823 to 143458856 33 - TSS region transcription start site region 75940
Cpgi19981 7 143458849 to 143461672 2823 CpG island CpG island 19981
Tssr75941 7 143458936 to 143458959 23 - TSS region transcription start site region 75941
Tssr75942 7 143459334 to 143459344 10 - TSS region transcription start site region 75942
Tssr75943 7 143459381 to 143459420 39 - TSS region transcription start site region 75943
Gm44732 7 143459749 to 143460640 891 + antisense lncRNA gene predicted gene 44732
Tssr70289 7 143459852 to 143459898 46 + TSS region transcription start site region 70289
Tssr75944 7 143460236 to 143460266 30 - TSS region transcription start site region 75944
Tssr75945 7 143460707 to 143460753 46 - TSS region transcription start site region 75945
Tssr75946 7 143460989 to 143461005 16 - TSS region transcription start site region 75946
AF313042 7 143462528 to 143462844 316 unclassified gene cDNA sequence AF313042
Gm33663 7 143463335 to 143466781 3446 - lncRNA gene predicted gene, 33663
Tssr75947 7 143464220 to 143464230 10 - TSS region transcription start site region 75947
Cpgi19982 7 143464755 to 143465513 758 CpG island CpG island 19982
Tssr70290 7 143466084 to 143466106 22 + TSS region transcription start site region 70290
Slc22a18 7 143473736 to 143499334 25598 + protein coding gene solute carrier family 22 (organic cation transporter), member 18
Tssr70291 7 143473750 to 143473808 58 + TSS region transcription start site region 70291
Tssr70292 7 143475094 to 143475115 21 + TSS region transcription start site region 70292
Tssr70293 7 143475120 to 143475162 42 + TSS region transcription start site region 70293
Tssr70294 7 143475166 to 143475192 26 + TSS region transcription start site region 70294
Tssr70295 7 143475201 to 143475207 6 + TSS region transcription start site region 70295
Tssr70296 7 143476110 to 143476122 12 + TSS region transcription start site region 70296
Tssr70297 7 143476132 to 143476160 28 + TSS region transcription start site region 70297
Tssr70298 7 143476163 to 143476192 29 + TSS region transcription start site region 70298
Tssr70299 7 143476232 to 143476245 13 + TSS region transcription start site region 70299
Tssr70300 7 143479709 to 143479757 48 + TSS region transcription start site region 70300
Cpgi19983 7 143501497 to 143503245 1748 CpG island CpG island 19983
Phlda2 7 143501545 to 143503145 1600 - protein coding gene pleckstrin homology like domain, family A, member 2
Tssr75948 7 143502120 to 143502148 28 - TSS region transcription start site region 75948
Tssr75949 7 143502515 to 143502532 17 - TSS region transcription start site region 75949
Tssr75950 7 143502754 to 143502793 39 - TSS region transcription start site region 75950
Nap1l4 7 143513579 to 143549106 35527 - protein coding gene nucleosome assembly protein 1-like 4
Tssr75951 7 143521577 to 143521614 37 - TSS region transcription start site region 75951
Gm23297 7 143531394 to 143531520 126 - snoRNA gene predicted gene, 23297
Tssr75952 7 143548028 to 143548032 4 - TSS region transcription start site region 75952
Cpgi19984 7 143548324 to 143549651 1327 CpG island CpG island 19984
Tssr2471 7 143548367 to 143548404 37 + TSS region transcription start site region 2471
Tssr75953 7 143548792 to 143548839 47 - TSS region transcription start site region 75953
Tssr75954 7 143549055 to 143549125 70 - TSS region transcription start site region 75954
Tssr75955 7 143549244 to 143549255 11 - TSS region transcription start site region 75955
Cars 7 143557230 to 143600090 42860 - protein coding gene cysteinyl-tRNA synthetase
Tssr75956 7 143569172 to 143569204 32 - TSS region transcription start site region 75956
Mir7064 7 143570671 to 143570759 88 - miRNA gene microRNA 7064
Tssr75957 7 143592465 to 143592474 9 - TSS region transcription start site region 75957
Tssr75958 7 143592490 to 143592511 21 - TSS region transcription start site region 75958
Gm15580 7 143596439 to 143596994 555 + pseudogene predicted gene 15580
Cpgi19985 7 143599825 to 143600313 488 CpG island CpG island 19985
Tssr75959 7 143600049 to 143600078 29 - TSS region transcription start site region 75959
Gm15579 7 143600091 to 143600858 767 + antisense lncRNA gene predicted gene 15579
Tnfrsf26 7 143607685 to 143627845 20160 - protein coding gene tumor necrosis factor receptor superfamily, member 26
Tssr75960 7 143608205 to 143608231 26 - TSS region transcription start site region 75960
Tssr75961 7 143608449 to 143608461 12 - TSS region transcription start site region 75961
Tssr70301 7 143626375 to 143626388 13 + TSS region transcription start site region 70301
Tssr75962 7 143627841 to 143627846 5 - TSS region transcription start site region 75962
Tssr75963 7 143627908 to 143627963 55 - TSS region transcription start site region 75963
E230032D23Rik 7 143628024 to 143670614 42590 + antisense lncRNA gene RIKEN cDNA E230032D23 gene
Tssr70302 7 143628048 to 143628063 15 + TSS region transcription start site region 70302
Tssr70303 7 143628069 to 143628121 52 + TSS region transcription start site region 70303
Tssr75964 7 143628111 to 143628176 65 - TSS region transcription start site region 75964
Tssr70304 7 143628220 to 143628230 10 + TSS region transcription start site region 70304
Tssr70305 7 143628239 to 143628286 47 + TSS region transcription start site region 70305
Tssr75965 7 143628343 to 143628361 18 - TSS region transcription start site region 75965
Tssr75966 7 143628366 to 143628377 11 - TSS region transcription start site region 75966
Tssr75967 7 143628397 to 143628411 14 - TSS region transcription start site region 75967
Tnfrsf22 7 143634806 to 143649661 14855 - protein coding gene tumor necrosis factor receptor superfamily, member 22