Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:142782535-143352541

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(7Gm7290-Th)1Lef 7 142678656 to 142969264 290608 chromosomal duplication duplication, Chr 7, Louis Lefebvre 1
Del(7Gm7290-Th)1Lef 7 142682272 to 142962499 280227 chromosomal deletion deletion, Chr 7, Louis Lefebvre 1
Tssr70260 7 142790510 to 142790515 5 + TSS region transcription start site region 70260
Gm6471 7 142815252 to 142852266 37014 + lincRNA gene predicted gene 6471
Gm39117 7 142844604 to 142857205 12601 - lincRNA gene predicted gene, 39117
Th 7 142892776 to 142899966 7190 - protein coding gene tyrosine hydroxylase
Tssr75910 7 142899985 to 142900002 17 - TSS region transcription start site region 75910
Ascl2 7 142966829 to 142969264 2435 - protein coding gene achaete-scute family bHLH transcription factor 2
Cpgi19970 7 142967201 to 142969612 2411 CpG island CpG island 19970
Tssr75911 7 142968204 to 142968225 21 - TSS region transcription start site region 75911
Tssr75912 7 142968760 to 142968777 17 - TSS region transcription start site region 75912
Tssr75913 7 142969238 to 142969251 13 - TSS region transcription start site region 75913
Tssr75914 7 142969258 to 142969269 11 - TSS region transcription start site region 75914
Tspan32os 7 142988969 to 143008033 19064 - antisense lncRNA gene tetraspanin 32, opposite strand
Tspan32 7 143004899 to 143019486 14587 + protein coding gene tetraspanin 32
Tssr70261 7 143005058 to 143005105 47 + TSS region transcription start site region 70261
Tssr70262 7 143005649 to 143005673 24 + TSS region transcription start site region 70262
Tssr70263 7 143005677 to 143005703 26 + TSS region transcription start site region 70263
Tssr70264 7 143005718 to 143005735 17 + TSS region transcription start site region 70264
Tssr70265 7 143005738 to 143005757 19 + TSS region transcription start site region 70265
Tssr70266 7 143005770 to 143005784 14 + TSS region transcription start site region 70266
Tssr75915 7 143008605 to 143008611 6 - TSS region transcription start site region 75915
Tssr75916 7 143008697 to 143008713 16 - TSS region transcription start site region 75916
R74862 7 143021784 to 143053686 31902 - lncRNA gene expressed sequence R74862
Tssr70267 7 143026616 to 143026617 1 + TSS region transcription start site region 70267
Cpgi19971 7 143052428 to 143053680 1252 CpG island CpG island 19971
Cd81 7 143052750 to 143067930 15180 + protein coding gene CD81 antigen
Tssr70268 7 143052752 to 143052763 11 + TSS region transcription start site region 70268
Tssr70269 7 143052776 to 143052797 21 + TSS region transcription start site region 70269
Tssr75917 7 143053379 to 143053459 80 - TSS region transcription start site region 75917
Tssr70270 7 143053474 to 143053483 9 + TSS region transcription start site region 70270
Tssr70271 7 143053517 to 143053543 26 + TSS region transcription start site region 70271
Tssr70272 7 143053554 to 143053569 15 + TSS region transcription start site region 70272
Tssr70273 7 143064948 to 143064959 11 + TSS region transcription start site region 70273
Tssr70274 7 143064969 to 143064977 8 + TSS region transcription start site region 70274
Tssr70275 7 143065754 to 143065763 9 + TSS region transcription start site region 70275
Tssr70276 7 143065784 to 143065794 10 + TSS region transcription start site region 70276
Tssr70277 7 143065933 to 143065949 16 + TSS region transcription start site region 70277
Tssr70278 7 143066730 to 143066739 9 + TSS region transcription start site region 70278
Tssr70279 7 143067365 to 143067388 23 + TSS region transcription start site region 70279
Tssr70280 7 143067401 to 143067476 75 + TSS region transcription start site region 70280
Tssr70281 7 143067535 to 143067541 6 + TSS region transcription start site region 70281
Cpgi19972 7 143068887 to 143070216 1329 CpG island CpG island 19972
Tssr2467 7 143068947 to 143068955 8 - TSS region transcription start site region 2467
Tssc4 7 143069249 to 143071093 1844 + protein coding gene tumor-suppressing subchromosomal transferable fragment 4
Tssr70282 7 143069397 to 143069500 103 + TSS region transcription start site region 70282
Tssr2468 7 143069504 to 143069531 27 + TSS region transcription start site region 2468
Trpm5 7 143071529 to 143094642 23113 - protein coding gene transient receptor potential cation channel, subfamily M, member 5
Tssr75918 7 143079555 to 143079584 29 - TSS region transcription start site region 75918
Tssr75919 7 143087115 to 143087155 40 - TSS region transcription start site region 75919
Tssr75920 7 143087208 to 143087219 11 - TSS region transcription start site region 75920
Tssr75921 7 143094005 to 143094041 36 - TSS region transcription start site region 75921
Tssr75922 7 143099876 to 143099877 1 - TSS region transcription start site region 75922
Tssr2469 7 143106358 to 143106364 6 + TSS region transcription start site region 2469
Cpgi19973 7 143106637 to 143107954 1317 CpG island CpG island 19973
Kcnq1 7 143106742 to 143427050 320308 + protein coding gene potassium voltage-gated channel, subfamily Q, member 1
Tssr70283 7 143107234 to 143107250 16 + TSS region transcription start site region 70283
Tssr70284 7 143107252 to 143107286 34 + TSS region transcription start site region 70284
Tssr70285 7 143107300 to 143107314 14 + TSS region transcription start site region 70285
Tssr70286 7 143109227 to 143109255 28 + TSS region transcription start site region 70286
Gm38321 7 143124569 to 143124803 234 + unclassified gene predicted gene, 38321
Gm37235 7 143127792 to 143127850 58 + unclassified gene predicted gene, 37235
Gm28821 7 143135031 to 143140608 5577 - antisense lncRNA gene predicted gene 28821
Cpgi19974 7 143153973 to 143154216 243 CpG island CpG island 19974
Cpgi19975 7 143154541 to 143154804 263 CpG island CpG island 19975
Tssr2470 7 143166045 to 143166047 2 + TSS region transcription start site region 2470
D7Mit175 7 143209639 to 143209745 106 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 175
Kcnq1ot1 7 143213111 to 143296547 83436 - antisense lncRNA gene KCNQ1 overlapping transcript 1
Tssr75923 7 143230270 to 143230282 12 - TSS region transcription start site region 75923
Tssr75924 7 143238090 to 143238103 13 - TSS region transcription start site region 75924
Tssr75925 7 143238196 to 143238209 13 - TSS region transcription start site region 75925
Tssr75926 7 143241422 to 143241441 19 - TSS region transcription start site region 75926
Tssr75927 7 143242452 to 143242474 22 - TSS region transcription start site region 75927
Tssr75928 7 143242568 to 143242583 15 - TSS region transcription start site region 75928
Tssr75929 7 143242712 to 143242720 8 - TSS region transcription start site region 75929
Tssr75930 7 143250465 to 143250472 7 - TSS region transcription start site region 75930
Gm27395 7 143251367 to 143251826 459 + unclassified non-coding RNA gene predicted gene, 27395
Gm27389 7 143273053 to 143273247 194 + unclassified non-coding RNA gene predicted gene, 27389
Gm27803 7 143273566 to 143273684 118 + unclassified non-coding RNA gene predicted gene, 27803
Tssr75931 7 143273770 to 143273775 5 - TSS region transcription start site region 75931
Gm27539 7 143293932 to 143294155 223 + unclassified non-coding RNA gene predicted gene, 27539
Cpgi19976 7 143295116 to 143296665 1549 CpG island CpG island 19976
Tssr75932 7 143296514 to 143296525 11 - TSS region transcription start site region 75932
Tssr75933 7 143296529 to 143296566 37 - TSS region transcription start site region 75933
Gm37364 7 143297698 to 143301617 3919 + unclassified gene predicted gene, 37364
Tssr75934 7 143299847 to 143299849 2 - TSS region transcription start site region 75934
Tssr70287 7 143306364 to 143306367 3 + TSS region transcription start site region 70287
4933417O13Rik 7 143322772 to 143330650 7878 - antisense lncRNA gene RIKEN cDNA 4933417O13 gene
Cpgi19977 7 143329572 to 143329787 215 CpG island CpG island 19977
Gm38095 7 143344437 to 143345838 1401 + unclassified gene predicted gene, 38095
Gm38065 7 143350421 to 143353912 3491 - unclassified gene predicted gene, 38065