Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:138480836-139319506

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30751 7 138486659 to 138608418 121759 - lncRNA gene predicted gene, 30751
4930543N07Rik 7 138554242 to 138566994 12752 + lincRNA gene RIKEN cDNA 4930543N07 gene
Tssr69683 7 138555222 to 138555225 3 + TSS region transcription start site region 69683
2900001A22Rik 7 138561884 to 138562294 410 unclassified gene RIKEN cDNA 2900001A22 gene
Gm30808 7 138700975 to 138703253 2278 + lincRNA gene predicted gene, 30808
Gm30874 7 138733527 to 138828897 95370 - lncRNA gene predicted gene, 30874
D7Mit292 7 138750928 to 138751043 115 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 292
Gm45506 7 138820745 to 138821024 279 + pseudogene predicted gene 45506
Cpgi19865 7 138829543 to 138829892 349 CpG island CpG island 19865
Cpgi19866 7 138830154 to 138830581 427 CpG island CpG island 19866
Tssr69684 7 138834901 to 138834902 1 + TSS region transcription start site region 69684
Mapk1ip1 7 138835818 to 138846267 10449 - protein coding gene mitogen-activated protein kinase 1 interacting protein 1
Cpgi19867 7 138845675 to 138847616 1941 CpG island CpG island 19867
Tssr75432 7 138846110 to 138846131 21 - TSS region transcription start site region 75432
Tssr75433 7 138846167 to 138846199 32 - TSS region transcription start site region 75433
Tssr75434 7 138846202 to 138846293 91 - TSS region transcription start site region 75434
Tssr69685 7 138846335 to 138846371 36 + TSS region transcription start site region 69685
Tssr69686 7 138846381 to 138846429 48 + TSS region transcription start site region 69686
Ppp2r2d 7 138846384 to 138883057 36673 + protein coding gene protein phosphatase 2, regulatory subunit B, delta
Tssr69687 7 138846579 to 138846623 44 + TSS region transcription start site region 69687
Tssr69688 7 138846634 to 138846660 26 + TSS region transcription start site region 69688
Tssr69689 7 138848476 to 138848490 14 + TSS region transcription start site region 69689
Tssr69690 7 138848510 to 138848533 23 + TSS region transcription start site region 69690
Tssr75435 7 138850032 to 138850057 25 - TSS region transcription start site region 75435
6030427F01Rik 7 138884286 to 138885980 1694 unclassified gene RIKEN cDNA 6030427F01 gene
Tssr75436 7 138885977 to 138885982 5 - TSS region transcription start site region 75436
Bnip3 7 138890836 to 138909506 18670 - protein coding gene BCL2/adenovirus E1B interacting protein 3
Gm45507 7 138890964 to 138894675 3711 + antisense lncRNA gene predicted gene 45507
Gm18258 7 138899388 to 138900239 851 + pseudogene predicted gene, 18258
Cpgi19868 7 138909091 to 138910056 965 CpG island CpG island 19868
Tssr75437 7 138909422 to 138909431 9 - TSS region transcription start site region 75437
Tssr75438 7 138909448 to 138909491 43 - TSS region transcription start site region 75438
Tssr75439 7 138909492 to 138909513 21 - TSS region transcription start site region 75439
Gm9358 7 138914388 to 138915314 926 + pseudogene predicted gene 9358
Cpgi19869 7 138919478 to 138919925 447 CpG island CpG island 19869
Gm45668 7 138929724 to 138930216 492 - pseudogene predicted gene 45668
Cpgi19870 7 138939355 to 138939510 155 CpG island CpG island 19870
Cpgi19871 7 138940302 to 138941729 1427 CpG island CpG island 19871
Tssr69691 7 138940363 to 138940396 33 + TSS region transcription start site region 69691
Tssr69692 7 138940717 to 138940744 27 + TSS region transcription start site region 69692
Jakmip3 7 138940730 to 139083976 143246 + protein coding gene janus kinase and microtubule interacting protein 3
Gm45613 7 139019160 to 139020999 1839 - antisense lncRNA gene predicted gene 45613
Cpgi19872 7 139020872 to 139021274 402 CpG island CpG island 19872
Tssr75440 7 139020943 to 139020957 14 - TSS region transcription start site region 75440
Tssr2439 7 139070516 to 139070517 1 + TSS region transcription start site region 2439
Cpgi19873 7 139085573 to 139086909 1336 CpG island CpG island 19873
Dpysl4 7 139085981 to 139101795 15814 + protein coding gene dihydropyrimidinase-like 4
Tssr69693 7 139085984 to 139086048 64 + TSS region transcription start site region 69693
Tssr69694 7 139086259 to 139086275 16 + TSS region transcription start site region 69694
Tssr69695 7 139096323 to 139096327 4 + TSS region transcription start site region 69695
Stk32c 7 139103638 to 139213307 109669 - protein coding gene serine/threonine kinase 32C
Cpgi19874 7 139187435 to 139188943 1508 CpG island CpG island 19874
Tssr75441 7 139188462 to 139188535 73 - TSS region transcription start site region 75441
Gm27975 7 139199196 to 139199296 100 - snRNA gene predicted gene, 27975
Gm45328 7 139212275 to 139213191 916 - unclassified gene predicted gene 45328
Cpgi19875 7 139212864 to 139213578 714 CpG island CpG island 19875
Tssr69696 7 139212974 to 139212993 19 + TSS region transcription start site region 69696
Lrrc27 7 139212988 to 139242979 29991 + protein coding gene leucine rich repeat containing 27
Tssr69697 7 139213003 to 139213016 13 + TSS region transcription start site region 69697
Tssr69698 7 139213239 to 139213304 65 + TSS region transcription start site region 69698
Tssr69699 7 139213309 to 139213320 11 + TSS region transcription start site region 69699
Tssr69700 7 139213380 to 139213411 31 + TSS region transcription start site region 69700
Tssr69701 7 139213493 to 139213512 19 + TSS region transcription start site region 69701
Tssr69702 7 139214661 to 139214681 20 + TSS region transcription start site region 69702
Tssr69703 7 139214683 to 139214709 26 + TSS region transcription start site region 69703
Tssr69704 7 139214710 to 139214722 12 + TSS region transcription start site region 69704
Tssr69705 7 139214723 to 139214733 10 + TSS region transcription start site region 69705
Tssr69706 7 139220574 to 139220619 45 + TSS region transcription start site region 69706
Tssr2440 7 139224849 to 139224860 11 - TSS region transcription start site region 2440
Tssr69707 7 139224976 to 139224985 9 + TSS region transcription start site region 69707
Gm32315 7 139232970 to 139235003 2033 - lncRNA gene predicted gene, 32315
Tssr75442 7 139234580 to 139234602 22 - TSS region transcription start site region 75442
Tssr69708 7 139235845 to 139235856 11 + TSS region transcription start site region 69708
Tssr69709 7 139235861 to 139235878 17 + TSS region transcription start site region 69709
Cpgi19876 7 139247240 to 139249332 2092 CpG island CpG island 19876
Tssr69710 7 139248211 to 139248229 18 + TSS region transcription start site region 69710
Tssr69711 7 139248410 to 139248456 46 + TSS region transcription start site region 69711
Tssr69712 7 139248477 to 139248532 55 + TSS region transcription start site region 69712
Pwwp2b 7 139248482 to 139267253 18771 + protein coding gene PWWP domain containing 2B
Tssr69713 7 139254927 to 139254969 42 + TSS region transcription start site region 69713
Tssr69714 7 139264760 to 139264765 5 + TSS region transcription start site region 69714
Gm32486 7 139292817 to 139296865 4048 - lincRNA gene predicted gene, 32486