Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:13206246-14427409

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r89 7 13219339 to 13220289 950 + protein coding gene vomeronasal 1 receptor 89
Vmn1r-ps69 7 13244162 to 13244362 200 + pseudogene vomeronasal 1 receptor, pseudogene 69
Zswim9 7 13258967 to 13278721 19754 - protein coding gene zinc finger SWIM-type containing 9
Cpgi18338 7 13260833 to 13261773 940 CpG island CpG island 18338
Tssr64537 7 13277155 to 13277214 59 + TSS region transcription start site region 64537
Tssr64538 7 13277254 to 13277270 16 + TSS region transcription start site region 64538
Lig1 7 13277313 to 13311427 34114 + protein coding gene ligase I, DNA, ATP-dependent
Cpgi18339 7 13278317 to 13279344 1027 CpG island CpG island 18339
Tssr64539 7 13278544 to 13278565 21 + TSS region transcription start site region 64539
Tssr70659 7 13278661 to 13278708 47 - TSS region transcription start site region 70659
Tssr64540 7 13278778 to 13278874 96 + TSS region transcription start site region 64540
Tssr64541 7 13278876 to 13278900 24 + TSS region transcription start site region 64541
Tssr64542 7 13285349 to 13285371 22 + TSS region transcription start site region 64542
Tssr64543 7 13303192 to 13303216 24 + TSS region transcription start site region 64543
Tssr64544 7 13309580 to 13309605 25 + TSS region transcription start site region 64544
Tssr64545 7 13309617 to 13309626 9 + TSS region transcription start site region 64545
Tssr64546 7 13324570 to 13324586 16 + TSS region transcription start site region 64546
Tssr64547 7 13324588 to 13324600 12 + TSS region transcription start site region 64547
Tssr64548 7 13324654 to 13324661 7 + TSS region transcription start site region 64548
Pla2g4c 7 13324655 to 13360672 36017 + protein coding gene phospholipase A2, group IVC (cytosolic, calcium-independent)
Rps8-ps4 7 13332646 to 13333257 611 - pseudogene ribosomal protein S8, pseudogene 4
Tssr70660 7 13333272 to 13333280 8 - TSS region transcription start site region 70660
Gm24909 7 13338830 to 13339109 279 + unclassified non-coding RNA gene predicted gene, 24909
Gm45268 7 13364707 to 13365076 369 - pseudogene predicted gene 45268
Pla2g4c-ps 7 13372629 to 13375488 2859 + pseudogene phospholipase A2, group IVC (cytosolic, calcium-independent), pseudogene
Gm23499 7 13374481 to 13374748 267 + unclassified non-coding RNA gene predicted gene, 23499
Tssr64549 7 13398115 to 13398127 12 + TSS region transcription start site region 64549
Cabp5 7 13398132 to 13408887 10755 + protein coding gene calcium binding protein 5
Tssr64550 7 13398150 to 13398168 18 + TSS region transcription start site region 64550
Rpl7a-ps14 7 13439503 to 13440292 789 - pseudogene ribosomal protein L7A, pseudogene 14
Tssr64551 7 13450835 to 13450836 1 + TSS region transcription start site region 64551
Bsph1 7 13450841 to 13473449 22608 + protein coding gene binder of sperm protein homolog 1
Tssr64552 7 13450872 to 13450883 11 + TSS region transcription start site region 64552
Gm44254 7 13480749 to 13481070 321 + pseudogene predicted gene, 44254
Bsph2-ps 7 13525633 to 13526068 435 + pseudogene binder of sperm protein homolog 2, pseudogene
Bsph2 7 13554866 to 13571067 16201 - protein coding gene binder of sperm protein homolog 2
Tssr70661 7 13571061 to 13571073 12 - TSS region transcription start site region 70661
Sult2a5 7 13623967 to 13670807 46840 + protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5
Tssr64553 7 13623973 to 13623982 9 + TSS region transcription start site region 64553
Tssr64554 7 13623983 to 13624001 18 + TSS region transcription start site region 64554
Zbed4-ps1 7 13639107 to 13642572 3465 + pseudogene zinc finger, BED type containing 4, pseudogene 1
Kat6b-ps1 7 13653996 to 13657428 3432 + pseudogene K(lysine) acetyltransferase 6B, pseudogene 1
Tmem167-ps1 7 13719693 to 13719906 213 - pseudogene transmembrane protein 167, pseudogene 1
Sult2a-ps1 7 13721079 to 13722465 1386 - pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 1
Tssr64555 7 13733502 to 13733504 2 + TSS region transcription start site region 64555
Sult2a2 7 13733506 to 13779637 46131 + protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2
Zbed4-ps2 7 13752831 to 13756278 3447 + pseudogene zinc finger, BED type containing 4, pseudogene 2
Sult2a1 7 13796246 to 13837409 41163 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
Kat6b-ps2 7 13813443 to 13815042 1599 - pseudogene k(lysine) acetyltransferase 6B, pseudogene 2
Tssr70662 7 13837410 to 13837411 1 - TSS region transcription start site region 70662
Sult2a-ps2 7 13846161 to 13847616 1455 + pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 2
Tmem167-ps2 7 13848729 to 13848942 213 + pseudogene transmembrane protein 167, pseudogene 2
Sult2a4 7 13909677 to 13989591 79914 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 4
Zbed4-ps3 7 13962972 to 13966215 3243 - pseudogene zinc finger, BED type containing 4, pseudogene 3
Tmem167-ps3 7 14006658 to 14006835 177 + pseudogene transmembrane protein 167, pseudogene 3
Sult2a3 7 14067555 to 14122993 55438 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3
Tssr70663 7 14123042 to 14123053 11 - TSS region transcription start site region 70663
Tssr70664 7 14123072 to 14123075 3 - TSS region transcription start site region 70664
Sult2a-ps3 7 14135422 to 14141004 5582 - pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 3
Sult2a-ps4 7 14171636 to 14193524 21888 - pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 4
Rpap3-ps1 7 14186628 to 14187081 453 - pseudogene RNA polymerase II associated protein 3, pseudogene 1
Sult2a6 7 14222403 to 14254870 32467 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6
Rpap3-ps2 7 14226673 to 14228833 2160 - pseudogene RNA polymerase II associated protein 3, pseudogene 2
Tssr70665 7 14254884 to 14254890 6 - TSS region transcription start site region 70665
Phf20-ps 7 14304780 to 14307665 2885 + pseudogene PHD finger protein 20, pseudogene
Obox8 7 14331436 to 14333557 2121 - protein coding gene oocyte specific homeobox 8
Tssr70666 7 14333570 to 14333574 4 - TSS region transcription start site region 70666
Mrps36-ps3 7 14342026 to 14342330 304 - pseudogene mitochondrial ribosomal protein S36, pseudogene 3
Crs-ps 7 14366951 to 14370207 3256 - pseudogene cone rod homeobox, pseudogene
Sult2a8 7 14410686 to 14446769 36083 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8