Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:13177313-13411427

33 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Vmn1r88	7	13177719 to 13178669	950	+	protein coding gene	vomeronasal 1 receptor, 88
Gm4879	7	13178903 to 13180174	1271	+	pseudogene	predicted pseudogene 4879
Gm38947	7	13192117 to 13197215	5098	-	lincRNA gene	predicted gene, 38947
Gm45525	7	13196629 to 13198711	2082	+	pseudogene	predicted gene 45525
Vmn1r89	7	13219339 to 13220289	950	+	protein coding gene	vomeronasal 1 receptor 89
Vmn1r-ps69	7	13244162 to 13244362	200	+	pseudogene	vomeronasal 1 receptor, pseudogene 69
Zswim9	7	13258967 to 13278721	19754	-	protein coding gene	zinc finger SWIM-type containing 9
Cpgi18338	7	13260833 to 13261773	940		CpG island	CpG island 18338
Tssr64537	7	13277155 to 13277214	59	+	TSS region	transcription start site region 64537
Tssr64538	7	13277254 to 13277270	16	+	TSS region	transcription start site region 64538
Lig1	7	13277313 to 13311427	34114	+	protein coding gene	ligase I, DNA, ATP-dependent
Cpgi18339	7	13278317 to 13279344	1027		CpG island	CpG island 18339
Tssr64539	7	13278544 to 13278565	21	+	TSS region	transcription start site region 64539
Tssr70659	7	13278661 to 13278708	47	-	TSS region	transcription start site region 70659
Tssr64540	7	13278778 to 13278874	96	+	TSS region	transcription start site region 64540
Tssr64541	7	13278876 to 13278900	24	+	TSS region	transcription start site region 64541
Tssr64542	7	13285349 to 13285371	22	+	TSS region	transcription start site region 64542
Tssr64543	7	13303192 to 13303216	24	+	TSS region	transcription start site region 64543
Tssr64544	7	13309580 to 13309605	25	+	TSS region	transcription start site region 64544
Tssr64545	7	13309617 to 13309626	9	+	TSS region	transcription start site region 64545
Tssr64546	7	13324570 to 13324586	16	+	TSS region	transcription start site region 64546
Tssr64547	7	13324588 to 13324600	12	+	TSS region	transcription start site region 64547
Tssr64548	7	13324654 to 13324661	7	+	TSS region	transcription start site region 64548
Pla2g4c	7	13324655 to 13360672	36017	+	protein coding gene	phospholipase A2, group IVC (cytosolic, calcium-independent)
Rps8-ps4	7	13332646 to 13333257	611	-	pseudogene	ribosomal protein S8, pseudogene 4
Tssr70660	7	13333272 to 13333280	8	-	TSS region	transcription start site region 70660
Gm24909	7	13338830 to 13339109	279	+	unclassified non-coding RNA gene	predicted gene, 24909
Gm45268	7	13364707 to 13365076	369	-	pseudogene	predicted gene 45268
Pla2g4c-ps	7	13372629 to 13375488	2859	+	pseudogene	phospholipase A2, group IVC (cytosolic, calcium-independent), pseudogene
Gm23499	7	13374481 to 13374748	267	+	unclassified non-coding RNA gene	predicted gene, 23499
Tssr64549	7	13398115 to 13398127	12	+	TSS region	transcription start site region 64549
Cabp5	7	13398132 to 13408887	10755	+	protein coding gene	calcium binding protein 5
Tssr64550	7	13398150 to 13398168	18	+	TSS region	transcription start site region 64550