Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:131495030-133348713

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi19817 7 131541523 to 131544809 3286 CpG island CpG island 19817
Hmx3 7 131542867 to 131544925 2058 + protein coding gene H6 homeobox 3
Tssr69568 7 131548755 to 131548761 6 + TSS region transcription start site region 69568
Hmx2 7 131548773 to 131558014 9241 + protein coding gene H6 homeobox 2
Cpgi19818 7 131552268 to 131552762 494 CpG island CpG island 19818
Cpgi19819 7 131553503 to 131554886 1383 CpG island CpG island 19819
Tssr69569 7 131554289 to 131554299 10 + TSS region transcription start site region 69569
Cpgi19820 7 131555266 to 131556146 880 CpG island CpG island 19820
Cpgi19821 7 131556844 to 131557233 389 CpG island CpG island 19821
Cpgi19822 7 131560237 to 131560942 705 CpG island CpG island 19822
Tssr69570 7 131560363 to 131560398 35 + TSS region transcription start site region 69570
Bub3 7 131560370 to 131571895 11525 + protein coding gene BUB3 mitotic checkpoint protein
Tssr69571 7 131560408 to 131560419 11 + TSS region transcription start site region 69571
Tssr69572 7 131560425 to 131560428 3 + TSS region transcription start site region 69572
Tssr69573 7 131560648 to 131560672 24 + TSS region transcription start site region 69573
Tssr69574 7 131560713 to 131560734 21 + TSS region transcription start site region 69574
Tssr69575 7 131571050 to 131571093 43 + TSS region transcription start site region 69575
Gm16477 7 131614188 to 131614988 800 - pseudogene predicted pseudogene 16477
Tssr69576 7 131619405 to 131619420 15 + TSS region transcription start site region 69576
Cpgi19823 7 131628329 to 131628522 193 CpG island CpG island 19823
Gm4585 7 131674431 to 131674882 451 - pseudogene predicted gene 4585
9030223M17Rik 7 131755109 to 131757818 2709 unclassified gene RIKEN cDNA 9030223M17 gene
Gm44547 7 131785134 to 131786579 1445 - unclassified gene predicted gene 44547
Gm44546 7 131824013 to 131883856 59843 + lincRNA gene predicted gene 44546
Gm34645 7 131824771 to 131827922 3151 - lncRNA gene predicted gene, 34645
Tssr69577 7 131877082 to 131877089 7 + TSS region transcription start site region 69577
Gm33146 7 131932391 to 131932654 263 - pseudogene predicted gene, 33146
Gm44548 7 131932463 to 131932654 191 - pseudogene predicted gene 44548
Gm34725 7 131936619 to 131963737 27118 - lncRNA gene predicted gene, 34725
1700016L15Rik 7 131937873 to 131938126 253 unclassified gene RIKEN cDNA 1700016L15 gene
Gpr26 7 131966138 to 131985633 19495 + protein coding gene G protein-coupled receptor 26
Tssr69578 7 131966446 to 131966469 23 + TSS region transcription start site region 69578
Cpgi19824 7 131966486 to 131967646 1160 CpG island CpG island 19824
Cpxm2 7 132032687 to 132154739 122052 - protein coding gene carboxypeptidase X 2 (M14 family)
n-R5s159 7 132058641 to 132058760 119 + rRNA gene nuclear encoded rRNA 5S 159
Tssr2424 7 132088763 to 132088776 13 + TSS region transcription start site region 2424
Tssr69579 7 132129781 to 132129783 2 + TSS region transcription start site region 69579
D7Mit359 7 132146888 to 132147006 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 359
Cpgi19825 7 132154052 to 132155055 1003 CpG island CpG island 19825
Gm15677 7 132154171 to 132155301 1130 + antisense lncRNA gene predicted gene 15677
Tssr75187 7 132154618 to 132154627 9 - TSS region transcription start site region 75187
Tssr75188 7 132154644 to 132154651 7 - TSS region transcription start site region 75188
Tssr75189 7 132154665 to 132154712 47 - TSS region transcription start site region 75189
Tssr75190 7 132154717 to 132154745 28 - TSS region transcription start site region 75190
D7Mit303 7 132191755 to 132191879 124 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 303
Chst15 7 132235780 to 132317228 81448 - protein coding gene carbohydrate sulfotransferase 15
D7Mit371 7 132257030 to 132257153 123 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 371
Tssr75191 7 132270397 to 132270419 22 - TSS region transcription start site region 75191
D7Ertd558e 7 132286631 to 132286833 202 DNA segment DNA segment, Chr 7, ERATO Doi 558, expressed
Tssr75192 7 132307146 to 132307150 4 - TSS region transcription start site region 75192
Tssr75193 7 132311611 to 132311626 15 - TSS region transcription start site region 75193
Gm44891 7 132311856 to 132314078 2222 - unclassified gene predicted gene 44891
Gm19463 7 132314912 to 132316306 1394 - unclassified gene predicted gene, 19463
Cpgi19826 7 132315464 to 132317412 1948 CpG island CpG island 19826
Gm10584 7 132315664 to 132318291 2627 + antisense lncRNA gene predicted gene 10584
Tssr75194 7 132317063 to 132317129 66 - TSS region transcription start site region 75194
Tssr75195 7 132317138 to 132317159 21 - TSS region transcription start site region 75195
Tssr75196 7 132317164 to 132317192 28 - TSS region transcription start site region 75196
Tssr75197 7 132317198 to 132317220 22 - TSS region transcription start site region 75197
Tssr2425 7 132317245 to 132317256 11 - TSS region transcription start site region 2425
Tssr75198 7 132317258 to 132317279 21 - TSS region transcription start site region 75198
Tssr75199 7 132317305 to 132317314 9 - TSS region transcription start site region 75199
Tssr75200 7 132317367 to 132317378 11 - TSS region transcription start site region 75200
Tssr2426 7 132317392 to 132317403 11 - TSS region transcription start site region 2426
Gm44892 7 132321595 to 132322082 487 + lincRNA gene predicted gene 44892
Tssr75201 7 132323528 to 132323550 22 - TSS region transcription start site region 75201
Tssr75202 7 132323573 to 132323584 11 - TSS region transcription start site region 75202
Gm34908 7 132361375 to 132365863 4488 - lincRNA gene predicted gene, 34908
Tssr75203 7 132365859 to 132365871 12 - TSS region transcription start site region 75203
Tssr69580 7 132405966 to 132405977 11 + TSS region transcription start site region 69580
Gm39101 7 132405990 to 132417412 11422 + lncRNA gene predicted gene, 39101
Tssr69581 7 132406001 to 132406008 7 + TSS region transcription start site region 69581
Gm44893 7 132420030 to 132423713 3683 + lincRNA gene predicted gene 44893
Gm35147 7 132462012 to 132466661 4649 - lincRNA gene predicted gene, 35147
Gm46002 7 132465925 to 132466807 882 + lncRNA gene predicted gene, 46002
Gm4587 7 132483658 to 132484294 636 + pseudogene predicted gene 4587
Gm35249 7 132538240 to 132541874 3634 + lncRNA gene predicted gene, 35249
Cpgi19827 7 132551573 to 132552094 521 CpG island CpG island 19827
Oat 7 132557478 to 132576398 18920 - protein coding gene ornithine aminotransferase
Tssr69582 7 132559416 to 132559418 2 + TSS region transcription start site region 69582
Tssr75204 7 132570158 to 132570174 16 - TSS region transcription start site region 75204
Tssr75205 7 132570190 to 132570232 42 - TSS region transcription start site region 75205
Cpgi19828 7 132575654 to 132576639 985 CpG island CpG island 19828
Tssr75206 7 132576318 to 132576319 1 - TSS region transcription start site region 75206
Tssr75207 7 132576337 to 132576355 18 - TSS region transcription start site region 75207
Tssr75208 7 132576360 to 132576371 11 - TSS region transcription start site region 75208
Tssr75209 7 132576372 to 132576392 20 - TSS region transcription start site region 75209
Tssr75210 7 132589773 to 132589788 15 - TSS region transcription start site region 75210
Nkx1-2 7 132596239 to 132599637 3398 - protein coding gene NK1 homeobox 2
Cpgi19829 7 132596893 to 132597966 1073 CpG island CpG island 19829
Gm16764 7 132597387 to 132599637 2250 + antisense lncRNA gene predicted gene, 16764
Cpgi19830 7 132599388 to 132600094 706 CpG island CpG island 19830
Tssr75211 7 132599597 to 132599609 12 - TSS region transcription start site region 75211
Tssr75212 7 132599614 to 132599636 22 - TSS region transcription start site region 75212
Gm46021 7 132607618 to 132607925 307 + pseudogene predicted gene, 46021
Cpgi19831 7 132610515 to 132611032 517 CpG island CpG island 19831
Tssr69583 7 132610620 to 132610662 42 + TSS region transcription start site region 69583
Lhpp 7 132610638 to 132706420 95782 + protein coding gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase
Tssr69584 7 132610685 to 132610700 15 + TSS region transcription start site region 69584
Tssr69585 7 132633905 to 132633939 34 + TSS region transcription start site region 69585
Gm15582 7 132657378 to 132659884 2506 - antisense lncRNA gene predicted gene 15582
Tssr69586 7 132664749 to 132664754 5 + TSS region transcription start site region 69586
Fam53b 7 132712084 to 132813196 101112 - protein coding gene family with sequence similarity 53, member B
Tssr75213 7 132720644 to 132720664 20 - TSS region transcription start site region 75213
Tssr75214 7 132720710 to 132720712 2 - TSS region transcription start site region 75214
Tssr75215 7 132748758 to 132748760 2 - TSS region transcription start site region 75215
Cpgi19832 7 132759391 to 132759997 606 CpG island CpG island 19832
Tssr75216 7 132762520 to 132762524 4 - TSS region transcription start site region 75216
Tssr75217 7 132771324 to 132771328 4 - TSS region transcription start site region 75217
Tssr75218 7 132776855 to 132776911 56 - TSS region transcription start site region 75218
Tssr69587 7 132782070 to 132782075 5 + TSS region transcription start site region 69587
Tssr75219 7 132786914 to 132786941 27 - TSS region transcription start site region 75219
Cpgi19833 7 132788858 to 132789037 179 CpG island CpG island 19833
D7Ertd677e 7 132799143 to 132799363 220 DNA segment DNA segment, Chr 7, ERATO Doi 677, expressed
Tssr75220 7 132808431 to 132808459 28 - TSS region transcription start site region 75220
Cpgi19834 7 132812416 to 132814209 1793 CpG island CpG island 19834
Tssr75221 7 132813134 to 132813162 28 - TSS region transcription start site region 75221
Tssr75222 7 132813164 to 132813182 18 - TSS region transcription start site region 75222
Tssr75223 7 132813651 to 132813667 16 - TSS region transcription start site region 75223
Tssr75224 7 132813680 to 132813702 22 - TSS region transcription start site region 75224
Tssr75225 7 132813715 to 132813733 18 - TSS region transcription start site region 75225
Tssr75226 7 132813774 to 132813795 21 - TSS region transcription start site region 75226
Tssr75227 7 132813799 to 132813905 106 - TSS region transcription start site region 75227
Eef1akmt2 7 132827457 to 132852673 25216 - protein coding gene EEF1A lysine methyltransferase 2
Gm45501 7 132837698 to 132840223 2525 - unclassified gene predicted gene 45501
Tssr75228 7 132845930 to 132845934 4 - TSS region transcription start site region 75228
Cpgi19835 7 132852290 to 132852784 494 CpG island CpG island 19835
Tssr75229 7 132852606 to 132852655 49 - TSS region transcription start site region 75229
Tssr75230 7 132852657 to 132852668 11 - TSS region transcription start site region 75230
Cpgi19836 7 132859087 to 132859757 670 CpG island CpG island 19836
Abraxas2 7 132859225 to 132885111 25886 + protein coding gene BRISC complex subunit
Tssr69588 7 132859238 to 132859266 28 + TSS region transcription start site region 69588
1500002F19Rik 7 132874614 to 132897571 22957 - lncRNA gene RIKEN cDNA 1500002F19 gene
Tssr75231 7 132888640 to 132888657 17 - TSS region transcription start site region 75231
Gm46003 7 132896878 to 132900134 3256 + lncRNA gene predicted gene, 46003
Tssr75232 7 132910958 to 132910967 9 - TSS region transcription start site region 75232
Tssr75233 7 132910982 to 132910983 1 - TSS region transcription start site region 75233
Tssr75234 7 132911002 to 132911008 6 - TSS region transcription start site region 75234
Gm45502 7 132911089 to 132919732 8643 + lincRNA gene predicted gene 45502
Cpgi19837 7 132930744 to 132932191 1447 CpG island CpG island 19837
Tssr69589 7 132931112 to 132931123 11 + TSS region transcription start site region 69589
Zranb1 7 132931142 to 132985411 54269 + protein coding gene zinc finger, RAN-binding domain containing 1
Tssr69590 7 132931147 to 132931155 8 + TSS region transcription start site region 69590
Tssr69591 7 132931166 to 132931185 19 + TSS region transcription start site region 69591
Tssr69592 7 132931199 to 132931219 20 + TSS region transcription start site region 69592
Tssr69593 7 132931228 to 132931246 18 + TSS region transcription start site region 69593
Tssr69594 7 132931351 to 132931363 12 + TSS region transcription start site region 69594
Tssr75235 7 132932148 to 132932161 13 - TSS region transcription start site region 75235
Tssr69595 7 132933581 to 132933599 18 + TSS region transcription start site region 69595
Gm15718 7 132979582 to 132983552 3970 - antisense lncRNA gene predicted gene 15718
Tssr75236 7 132984156 to 132984160 4 - TSS region transcription start site region 75236
Ctbp2 7 132987011 to 133123749 136738 - protein coding gene C-terminal binding protein 2
Tssr75237 7 132988221 to 132988258 37 - TSS region transcription start site region 75237
Tssr75238 7 132989750 to 132989754 4 - TSS region transcription start site region 75238
Tssr75239 7 132991656 to 132991678 22 - TSS region transcription start site region 75239
Eih4 7 132998156 to 4235946 -128762210 QTL ethanol induced hypothermia 4
4932437C15Rik 7 133001443 to 133005561 4118 + lncRNA gene RIKEN cDNA 4932437C15 gene
Tssr69596 7 133001617 to 133001624 7 + TSS region transcription start site region 69596
Tssr75240 7 133005801 to 133005845 44 - TSS region transcription start site region 75240
Tssr69597 7 133005989 to 133006025 36 + TSS region transcription start site region 69597
Tssr75241 7 133015313 to 133015329 16 - TSS region transcription start site region 75241
Tssr75242 7 133015469 to 133015482 13 - TSS region transcription start site region 75242
Tssr75243 7 133015501 to 133015519 18 - TSS region transcription start site region 75243
Tssr75244 7 133039712 to 133039714 2 - TSS region transcription start site region 75244
Tssr75245 7 133089111 to 133089115 4 - TSS region transcription start site region 75245
D930021H04Rik 7 133093830 to 133095626 1796 unclassified gene RIKEN cDNA D930021H04 gene
Tssr75246 7 133112706 to 133112718 12 - TSS region transcription start site region 75246
B930086L07Rik 7 133116534 to 133120271 3737 - unclassified gene RIKEN cDNA B930086L07 gene
Cpgi19838 7 133121522 to 133125163 3641 CpG island CpG island 19838
Tssr75247 7 133122185 to 133122214 29 - TSS region transcription start site region 75247
Tssr75248 7 133122738 to 133122762 24 - TSS region transcription start site region 75248
Tssr75249 7 133123160 to 133123185 25 - TSS region transcription start site region 75249
Tssr75250 7 133123194 to 133123224 30 - TSS region transcription start site region 75250
Tssr75251 7 133123328 to 133123339 11 - TSS region transcription start site region 75251
Tssr75252 7 133123353 to 133123377 24 - TSS region transcription start site region 75252
Tssr75253 7 133123383 to 133123404 21 - TSS region transcription start site region 75253
Tssr75254 7 133123409 to 133123419 10 - TSS region transcription start site region 75254
Gm35364 7 133123549 to 133124611 1062 + protein coding gene predicted gene, 35364
Tssr75255 7 133123853 to 133123876 23 - TSS region transcription start site region 75255
Tssr69598 7 133124018 to 133124032 14 + TSS region transcription start site region 69598
4930483O08Rik 7 133128251 to 133142457 14206 + lincRNA gene RIKEN cDNA 4930483O08 gene
Tssr75256 7 133186426 to 133186433 7 - TSS region transcription start site region 75256
Gm35567 7 133215954 to 133221529 5575 + lncRNA gene predicted gene, 35567
Tssr69599 7 133309753 to 133309755 2 + TSS region transcription start site region 69599
Gm45672 7 133319985 to 133333201 13216 - lincRNA gene predicted gene 45672