Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:131180408-131940419

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5430419D17Rik 7 131174402 to 131250945 76543 + protein coding gene RIKEN cDNA 5430419D17 gene
Tssr2418 7 131199067 to 131199074 7 + TSS region transcription start site region 2418
Tssr69560 7 131223303 to 131223313 10 + TSS region transcription start site region 69560
Tssr69561 7 131223347 to 131223359 12 + TSS region transcription start site region 69561
Tssr69562 7 131236876 to 131236880 4 + TSS region transcription start site region 69562
Gm18707 7 131262664 to 131266129 3465 + pseudogene predicted gene, 18707
BB114814 7 131283587 to 131306452 22865 + protein coding gene expressed sequence BB114814
Cpgi19813 7 131298185 to 131298489 304 CpG island CpG island 19813
Tssr69563 7 131303689 to 131303719 30 + TSS region transcription start site region 69563
Cuzd1 7 131308554 to 131322292 13738 - protein coding gene CUB and zona pellucida-like domains 1
Tssr75171 7 131312262 to 131312273 11 - TSS region transcription start site region 75171
Tssr75172 7 131316211 to 131316221 10 - TSS region transcription start site region 75172
Tssr75173 7 131320104 to 131320115 11 - TSS region transcription start site region 75173
Tssr75174 7 131322052 to 131322069 17 - TSS region transcription start site region 75174
Tssr75175 7 131322070 to 131322094 24 - TSS region transcription start site region 75175
Tssr75176 7 131322103 to 131322108 5 - TSS region transcription start site region 75176
Tssr2419 7 131322350 to 131322359 9 - TSS region transcription start site region 2419
Tssr2420 7 131322371 to 131322394 23 - TSS region transcription start site region 2420
Tssr2421 7 131322396 to 131322407 11 - TSS region transcription start site region 2421
Tssr2422 7 131322437 to 131322444 7 - TSS region transcription start site region 2422
Fam24b 7 131325944 to 131329516 3572 - protein coding gene family with sequence similarity 24 member B
Tssr75177 7 131329461 to 131329465 4 - TSS region transcription start site region 75177
Tssr75178 7 131329470 to 131329486 16 - TSS region transcription start site region 75178
Tssr75179 7 131329493 to 131329504 11 - TSS region transcription start site region 75179
Tssr75180 7 131329507 to 131329522 15 - TSS region transcription start site region 75180
Tssr75181 7 131329527 to 131329530 3 - TSS region transcription start site region 75181
Tssr69564 7 131334529 to 131334565 36 + TSS region transcription start site region 69564
Tssr2423 7 131334577 to 131334580 3 + TSS region transcription start site region 2423
Fam24a 7 131334622 to 131336716 2094 + protein coding gene family with sequence similarity 24, member A
9330174C13Rik 7 131338181 to 131341070 2889 unclassified gene RIKEN cDNA 9330174C13 gene
2310057M21Rik 7 131340862 to 131362845 21983 - protein coding gene RIKEN cDNA 2310057M21 gene
Cpgi19814 7 131362192 to 131363386 1194 CpG island CpG island 19814
Tssr75182 7 131362687 to 131362725 38 - TSS region transcription start site region 75182
Tssr75183 7 131362727 to 131362737 10 - TSS region transcription start site region 75183
Tssr75184 7 131362739 to 131362750 11 - TSS region transcription start site region 75184
Cpgi19815 7 131370924 to 131371689 765 CpG island CpG island 19815
Pstk 7 131371113 to 131392768 21655 + protein coding gene phosphoseryl-tRNA kinase
Tssr69565 7 131371138 to 131371182 44 + TSS region transcription start site region 69565
Tssr69566 7 131371195 to 131371206 11 + TSS region transcription start site region 69566
Gm44623 7 131385513 to 131385946 433 - antisense lncRNA gene predicted gene 44623
Ikzf5 7 131388649 to 131410506 21857 - protein coding gene IKAROS family zinc finger 5
Gm44624 7 131396258 to 131398535 2277 + unclassified gene predicted gene 44624
Gm44625 7 131401236 to 131402796 1560 - unclassified gene predicted gene 44625
Cpgi19816 7 131409778 to 131410963 1185 CpG island CpG island 19816
Tssr75185 7 131410325 to 131410346 21 - TSS region transcription start site region 75185
Tssr75186 7 131410495 to 131410520 25 - TSS region transcription start site region 75186
Acadsb 7 131410601 to 131446211 35610 + protein coding gene acyl-Coenzyme A dehydrogenase, short/branched chain
Tssr69567 7 131410633 to 131410726 93 + TSS region transcription start site region 69567
Gm44982 7 131440471 to 131440941 470 + sense intronic lncRNA gene predicted gene 44982
Gm18600 7 131457012 to 131457516 504 + pseudogene predicted gene, 18600
Gm39099 7 131461728 to 131472218 10490 + lncRNA gene predicted gene, 39099
Gm44984 7 131472474 to 131472867 393 - pseudogene predicted gene 44984
Gm45105 7 131493507 to 131493903 396 - pseudogene predicted gene 45105
Cpgi19817 7 131541523 to 131544809 3286 CpG island CpG island 19817
Hmx3 7 131542867 to 131544925 2058 + protein coding gene H6 homeobox 3
Tssr69568 7 131548755 to 131548761 6 + TSS region transcription start site region 69568
Hmx2 7 131548773 to 131558014 9241 + protein coding gene H6 homeobox 2
Cpgi19818 7 131552268 to 131552762 494 CpG island CpG island 19818
Cpgi19819 7 131553503 to 131554886 1383 CpG island CpG island 19819
Tssr69569 7 131554289 to 131554299 10 + TSS region transcription start site region 69569
Cpgi19820 7 131555266 to 131556146 880 CpG island CpG island 19820
Cpgi19821 7 131556844 to 131557233 389 CpG island CpG island 19821
Cpgi19822 7 131560237 to 131560942 705 CpG island CpG island 19822
Tssr69570 7 131560363 to 131560398 35 + TSS region transcription start site region 69570
Bub3 7 131560370 to 131571895 11525 + protein coding gene BUB3 mitotic checkpoint protein
Tssr69571 7 131560408 to 131560419 11 + TSS region transcription start site region 69571
Tssr69572 7 131560425 to 131560428 3 + TSS region transcription start site region 69572
Tssr69573 7 131560648 to 131560672 24 + TSS region transcription start site region 69573
Tssr69574 7 131560713 to 131560734 21 + TSS region transcription start site region 69574
Tssr69575 7 131571050 to 131571093 43 + TSS region transcription start site region 69575
Gm16477 7 131614188 to 131614988 800 - pseudogene predicted pseudogene 16477
Tssr69576 7 131619405 to 131619420 15 + TSS region transcription start site region 69576
Cpgi19823 7 131628329 to 131628522 193 CpG island CpG island 19823
Gm4585 7 131674431 to 131674882 451 - pseudogene predicted gene 4585
9030223M17Rik 7 131755109 to 131757818 2709 unclassified gene RIKEN cDNA 9030223M17 gene
Gm44547 7 131785134 to 131786579 1445 - unclassified gene predicted gene 44547
Gm44546 7 131824013 to 131883856 59843 + lincRNA gene predicted gene 44546
Gm34645 7 131824771 to 131827922 3151 - lncRNA gene predicted gene, 34645
Tssr69577 7 131877082 to 131877089 7 + TSS region transcription start site region 69577
Gm33146 7 131932391 to 131932654 263 - pseudogene predicted gene, 33146
Gm44548 7 131932463 to 131932654 191 - pseudogene predicted gene 44548
Gm34725 7 131936619 to 131963737 27118 - lncRNA gene predicted gene, 34725
1700016L15Rik 7 131937873 to 131938126 253 unclassified gene RIKEN cDNA 1700016L15 gene