Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:12947555-15242993

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236 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1810019N24Rik 7 12948592 to 12961768 13176 - lincRNA gene RIKEN cDNA 1810019N24 gene
Cpgi18324 7 12949332 to 12950118 786 CpG island CpG island 18324
Tssr64498 7 12949764 to 12949776 12 + TSS region transcription start site region 64498
Gm29638 7 12959299 to 12961887 2588 + lincRNA gene predicted gene 29638
Cpgi18325 7 12961515 to 12962071 556 CpG island CpG island 18325
Tssr70628 7 12961808 to 12961827 19 - TSS region transcription start site region 70628
Tssr64499 7 12962009 to 12962022 13 + TSS region transcription start site region 64499
Cpgi18326 7 12965713 to 12966454 741 CpG island CpG island 18326
Tssr64500 7 12965831 to 12965894 63 + TSS region transcription start site region 64500
Zfp324 7 12965838 to 12974236 8398 + protein coding gene zinc finger protein 324
Tssr64501 7 12965962 to 12965973 11 + TSS region transcription start site region 64501
Tssr64502 7 12966230 to 12966261 31 + TSS region transcription start site region 64502
Cpgi18327 7 12970751 to 12971592 841 CpG island CpG island 18327
Cpgi18328 7 12977692 to 12978530 838 CpG island CpG island 18328
Tssr64503 7 12977834 to 12977900 66 + TSS region transcription start site region 64503
Zfp446 7 12977848 to 12985714 7866 + protein coding gene zinc finger protein 446
Tssr64504 7 12978212 to 12978232 20 + TSS region transcription start site region 64504
Tssr64505 7 12978277 to 12978285 8 + TSS region transcription start site region 64505
Tssr64506 7 12978323 to 12978338 15 + TSS region transcription start site region 64506
Tssr64507 7 12978344 to 12978355 11 + TSS region transcription start site region 64507
Slc27a5 7 12988346 to 12998192 9846 - protein coding gene solute carrier family 27 (fatty acid transporter), member 5
Tssr70629 7 12991621 to 12991625 4 - TSS region transcription start site region 70629
Tssr70630 7 12997416 to 12997453 37 - TSS region transcription start site region 70630
Tssr70631 7 12997667 to 12997671 4 - TSS region transcription start site region 70631
Tssr70632 7 12998110 to 12998125 15 - TSS region transcription start site region 70632
Tssr70633 7 12998140 to 12998171 31 - TSS region transcription start site region 70633
Tssr70634 7 12998172 to 12998210 38 - TSS region transcription start site region 70634
Tssr2079 7 12999076 to 12999090 14 + TSS region transcription start site region 2079
Tssr64508 7 12999121 to 12999130 9 + TSS region transcription start site region 64508
Zbtb45 7 13005666 to 13010168 4502 - protein coding gene zinc finger and BTB domain containing 45
Cpgi18329 7 13006029 to 13006451 422 CpG island CpG island 18329
Cpgi18330 7 13006944 to 13007152 208 CpG island CpG island 18330
Cpgi18331 7 13007484 to 13008361 877 CpG island CpG island 18331
Cpgi18332 7 13009456 to 13010102 646 CpG island CpG island 18332
Tssr70635 7 13009795 to 13009856 61 - TSS region transcription start site region 70635
Tssr70636 7 13009991 to 13010031 40 - TSS region transcription start site region 70636
Tssr70637 7 13010034 to 13010054 20 - TSS region transcription start site region 70637
Tssr64509 7 13010128 to 13010135 7 + TSS region transcription start site region 64509
Tssr70638 7 13013874 to 13013899 25 - TSS region transcription start site region 70638
Tssr70639 7 13014240 to 13014274 34 - TSS region transcription start site region 70639
Tssr70640 7 13014282 to 13014301 19 - TSS region transcription start site region 70640
Tssr64510 7 13014744 to 13014757 13 + TSS region transcription start site region 64510
Tssr64511 7 13016850 to 13016858 8 + TSS region transcription start site region 64511
Cpgi18333 7 13023111 to 13025440 2329 CpG island CpG island 18333
Tssr70641 7 13023205 to 13023223 18 - TSS region transcription start site region 70641
Tssr64512 7 13023354 to 13023367 13 + TSS region transcription start site region 64512
Tssr64513 7 13023378 to 13023396 18 + TSS region transcription start site region 64513
Gm31649 7 13023708 to 13024678 970 - protein coding gene predicted gene, 31649
Tssr64514 7 13024120 to 13024188 68 + TSS region transcription start site region 64514
Trim28 7 13024152 to 13031032 6880 + protein coding gene tripartite motif-containing 28
Tssr64515 7 13024368 to 13024383 15 + TSS region transcription start site region 64515
Tssr64516 7 13024392 to 13024421 29 + TSS region transcription start site region 64516
Tssr64517 7 13024654 to 13024667 13 + TSS region transcription start site region 64517
Tssr64518 7 13024669 to 13024720 51 + TSS region transcription start site region 64518
Tssr64519 7 13025653 to 13025680 27 + TSS region transcription start site region 64519
Tssr64520 7 13025734 to 13025743 9 + TSS region transcription start site region 64520
Tssr64521 7 13027897 to 13027910 13 + TSS region transcription start site region 64521
Tssr64522 7 13029549 to 13029569 20 + TSS region transcription start site region 64522
Tssr64523 7 13029674 to 13029717 43 + TSS region transcription start site region 64523
Tssr64524 7 13029772 to 13029789 17 + TSS region transcription start site region 64524
Tssr64525 7 13029856 to 13029868 12 + TSS region transcription start site region 64525
Tssr64526 7 13029873 to 13029888 15 + TSS region transcription start site region 64526
Tssr64527 7 13030079 to 13030103 24 + TSS region transcription start site region 64527
Tssr64528 7 13030126 to 13030143 17 + TSS region transcription start site region 64528
Tssr64529 7 13030327 to 13030339 12 + TSS region transcription start site region 64529
Tssr64530 7 13030462 to 13030473 11 + TSS region transcription start site region 64530
Tssr64531 7 13030475 to 13030493 18 + TSS region transcription start site region 64531
Tssr64532 7 13030508 to 13030537 29 + TSS region transcription start site region 64532
Tssr64533 7 13030954 to 13030966 12 + TSS region transcription start site region 64533
Chmp2a 7 13032006 to 13034777 2771 - protein coding gene charged multivesicular body protein 2A
Tssr70642 7 13033952 to 13033965 13 - TSS region transcription start site region 70642
Tssr70643 7 13034019 to 13034036 17 - TSS region transcription start site region 70643
Tssr70644 7 13034123 to 13034146 23 - TSS region transcription start site region 70644
Cpgi18334 7 13034241 to 13035119 878 CpG island CpG island 18334
Tssr70645 7 13034401 to 13034414 13 - TSS region transcription start site region 70645
Tssr70646 7 13034604 to 13034673 69 - TSS region transcription start site region 70646
Tssr70647 7 13034703 to 13034714 11 - TSS region transcription start site region 70647
Tssr70648 7 13034722 to 13034782 60 - TSS region transcription start site region 70648
Tssr64534 7 13034864 to 13034879 15 + TSS region transcription start site region 64534
Ube2m 7 13035120 to 13038275 3155 - protein coding gene ubiquitin-conjugating enzyme E2M
Tssr70649 7 13035453 to 13035466 13 - TSS region transcription start site region 70649
Tssr70650 7 13035472 to 13035535 63 - TSS region transcription start site region 70650
Tssr70651 7 13036624 to 13036662 38 - TSS region transcription start site region 70651
Cpgi18335 7 13037339 to 13038803 1464 CpG island CpG island 18335
Tssr70652 7 13037659 to 13037667 8 - TSS region transcription start site region 70652
Tssr64535 7 13037674 to 13037700 26 + TSS region transcription start site region 64535
Tssr70653 7 13037684 to 13037692 8 - TSS region transcription start site region 70653
Tssr70654 7 13037821 to 13037832 11 - TSS region transcription start site region 70654
Tssr70655 7 13037833 to 13037951 118 - TSS region transcription start site region 70655
Tssr70656 7 13037962 to 13037969 7 - TSS region transcription start site region 70656
Tssr64536 7 13037996 to 13038047 51 + TSS region transcription start site region 64536
Tssr70657 7 13038201 to 13038307 106 - TSS region transcription start site region 70657
Tssr70658 7 13038311 to 13038322 11 - TSS region transcription start site region 70658
Mzf1 7 13042303 to 13054764 12461 - protein coding gene myeloid zinc finger 1
Cpgi18336 7 13043042 to 13044696 1654 CpG island CpG island 18336
Cpgi18337 7 13054046 to 13054950 904 CpG island CpG island 18337
Vmn1r85 7 13084289 to 13085215 926 - protein coding gene vomeronasal 1 receptor 85
Gm45436 7 13093172 to 13098674 5502 + lincRNA gene predicted gene 45436
Gm4270 7 13094992 to 13095397 405 + pseudogene predicted gene 4270
Vmn1r86 7 13101997 to 13102947 950 - protein coding gene vomeronasal 1 receptor 86
Vmn1r87 7 13131471 to 13132358 887 - protein coding gene vomeronasal 1 receptor 87
Gm7965 7 13150477 to 13151581 1104 - pseudogene predicted gene 7965
Gm38946 7 13171968 to 13173057 1089 + lncRNA gene predicted gene, 38946
Vmn1r88 7 13177719 to 13178669 950 + protein coding gene vomeronasal 1 receptor, 88
Gm4879 7 13178903 to 13180174 1271 + pseudogene predicted pseudogene 4879
Gm38947 7 13192117 to 13197215 5098 - lincRNA gene predicted gene, 38947
Gm45525 7 13196629 to 13198711 2082 + pseudogene predicted gene 45525
Vmn1r89 7 13219339 to 13220289 950 + protein coding gene vomeronasal 1 receptor 89
Vmn1r-ps69 7 13244162 to 13244362 200 + pseudogene vomeronasal 1 receptor, pseudogene 69
Zswim9 7 13258967 to 13278721 19754 - protein coding gene zinc finger SWIM-type containing 9
Cpgi18338 7 13260833 to 13261773 940 CpG island CpG island 18338
Tssr64537 7 13277155 to 13277214 59 + TSS region transcription start site region 64537
Tssr64538 7 13277254 to 13277270 16 + TSS region transcription start site region 64538
Lig1 7 13277313 to 13311427 34114 + protein coding gene ligase I, DNA, ATP-dependent
Cpgi18339 7 13278317 to 13279344 1027 CpG island CpG island 18339
Tssr64539 7 13278544 to 13278565 21 + TSS region transcription start site region 64539
Tssr70659 7 13278661 to 13278708 47 - TSS region transcription start site region 70659
Tssr64540 7 13278778 to 13278874 96 + TSS region transcription start site region 64540
Tssr64541 7 13278876 to 13278900 24 + TSS region transcription start site region 64541
Tssr64542 7 13285349 to 13285371 22 + TSS region transcription start site region 64542
Tssr64543 7 13303192 to 13303216 24 + TSS region transcription start site region 64543
Tssr64544 7 13309580 to 13309605 25 + TSS region transcription start site region 64544
Tssr64545 7 13309617 to 13309626 9 + TSS region transcription start site region 64545
Tssr64546 7 13324570 to 13324586 16 + TSS region transcription start site region 64546
Tssr64547 7 13324588 to 13324600 12 + TSS region transcription start site region 64547
Tssr64548 7 13324654 to 13324661 7 + TSS region transcription start site region 64548
Pla2g4c 7 13324655 to 13360672 36017 + protein coding gene phospholipase A2, group IVC (cytosolic, calcium-independent)
Rps8-ps4 7 13332646 to 13333257 611 - pseudogene ribosomal protein S8, pseudogene 4
Tssr70660 7 13333272 to 13333280 8 - TSS region transcription start site region 70660
Gm24909 7 13338830 to 13339109 279 + unclassified non-coding RNA gene predicted gene, 24909
Gm45268 7 13364707 to 13365076 369 - pseudogene predicted gene 45268
Pla2g4c-ps 7 13372629 to 13375488 2859 + pseudogene phospholipase A2, group IVC (cytosolic, calcium-independent), pseudogene
Gm23499 7 13374481 to 13374748 267 + unclassified non-coding RNA gene predicted gene, 23499
Tssr64549 7 13398115 to 13398127 12 + TSS region transcription start site region 64549
Cabp5 7 13398132 to 13408887 10755 + protein coding gene calcium binding protein 5
Tssr64550 7 13398150 to 13398168 18 + TSS region transcription start site region 64550
Rpl7a-ps14 7 13439503 to 13440292 789 - pseudogene ribosomal protein L7A, pseudogene 14
Tssr64551 7 13450835 to 13450836 1 + TSS region transcription start site region 64551
Bsph1 7 13450841 to 13473449 22608 + protein coding gene binder of sperm protein homolog 1
Tssr64552 7 13450872 to 13450883 11 + TSS region transcription start site region 64552
Gm44254 7 13480749 to 13481070 321 + pseudogene predicted gene, 44254
Bsph2-ps 7 13525633 to 13526068 435 + pseudogene binder of sperm protein homolog 2, pseudogene
Bsph2 7 13554866 to 13571067 16201 - protein coding gene binder of sperm protein homolog 2
Tssr70661 7 13571061 to 13571073 12 - TSS region transcription start site region 70661
Sult2a5 7 13623967 to 13670807 46840 + protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5
Tssr64553 7 13623973 to 13623982 9 + TSS region transcription start site region 64553
Tssr64554 7 13623983 to 13624001 18 + TSS region transcription start site region 64554
Zbed4-ps1 7 13639107 to 13642572 3465 + pseudogene zinc finger, BED type containing 4, pseudogene 1
Kat6b-ps1 7 13653996 to 13657428 3432 + pseudogene K(lysine) acetyltransferase 6B, pseudogene 1
Tmem167-ps1 7 13719693 to 13719906 213 - pseudogene transmembrane protein 167, pseudogene 1
Sult2a-ps1 7 13721079 to 13722465 1386 - pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 1
Tssr64555 7 13733502 to 13733504 2 + TSS region transcription start site region 64555
Sult2a2 7 13733506 to 13779637 46131 + protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2
Zbed4-ps2 7 13752831 to 13756278 3447 + pseudogene zinc finger, BED type containing 4, pseudogene 2
Sult2a1 7 13796246 to 13837409 41163 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
Kat6b-ps2 7 13813443 to 13815042 1599 - pseudogene k(lysine) acetyltransferase 6B, pseudogene 2
Tssr70662 7 13837410 to 13837411 1 - TSS region transcription start site region 70662
Sult2a-ps2 7 13846161 to 13847616 1455 + pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 2
Tmem167-ps2 7 13848729 to 13848942 213 + pseudogene transmembrane protein 167, pseudogene 2
Sult2a4 7 13909677 to 13989591 79914 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 4
Zbed4-ps3 7 13962972 to 13966215 3243 - pseudogene zinc finger, BED type containing 4, pseudogene 3
Tmem167-ps3 7 14006658 to 14006835 177 + pseudogene transmembrane protein 167, pseudogene 3
Sult2a3 7 14067555 to 14122993 55438 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3
Tssr70663 7 14123042 to 14123053 11 - TSS region transcription start site region 70663
Tssr70664 7 14123072 to 14123075 3 - TSS region transcription start site region 70664
Sult2a-ps3 7 14135422 to 14141004 5582 - pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 3
Sult2a-ps4 7 14171636 to 14193524 21888 - pseudogene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 4
Rpap3-ps1 7 14186628 to 14187081 453 - pseudogene RNA polymerase II associated protein 3, pseudogene 1
Sult2a6 7 14222403 to 14254870 32467 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6
Rpap3-ps2 7 14226673 to 14228833 2160 - pseudogene RNA polymerase II associated protein 3, pseudogene 2
Tssr70665 7 14254884 to 14254890 6 - TSS region transcription start site region 70665
Phf20-ps 7 14304780 to 14307665 2885 + pseudogene PHD finger protein 20, pseudogene
Obox8 7 14331436 to 14333557 2121 - protein coding gene oocyte specific homeobox 8
Tssr70666 7 14333570 to 14333574 4 - TSS region transcription start site region 70666
Mrps36-ps3 7 14342026 to 14342330 304 - pseudogene mitochondrial ribosomal protein S36, pseudogene 3
Crs-ps 7 14366951 to 14370207 3256 - pseudogene cone rod homeobox, pseudogene
Sult2a8 7 14410686 to 14446769 36083 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
Tssr70667 7 14427851 to 14427900 49 - TSS region transcription start site region 70667
Tssr70668 7 14436440 to 14436457 17 - TSS region transcription start site region 70668
Tssr70669 7 14438538 to 14438558 20 - TSS region transcription start site region 70669
Tssr70670 7 14439638 to 14439677 39 - TSS region transcription start site region 70670
Tssr70671 7 14446509 to 14446516 7 - TSS region transcription start site region 70671
Tssr70672 7 14446570 to 14446587 17 - TSS region transcription start site region 70672
Tssr70673 7 14446651 to 14446672 21 - TSS region transcription start site region 70673
Sult2a7 7 14465159 to 14492926 27767 - protein coding gene sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7
Tssr70674 7 14493017 to 14493041 24 - TSS region transcription start site region 70674
Obox4-ps1 7 14517971 to 14518670 699 - pseudogene oocyte specific homeobox 4, pseudogene 1
Tssr64556 7 14518556 to 14518567 11 + TSS region transcription start site region 64556
Obox4-ps2 7 14529625 to 14530066 441 - pseudogene oocyte specific homeobox 4, pseudogene 2
Nlrp5-ps 7 14530652 to 14622479 91827 - pseudogene NLR family, pyrin domain containing 5, pseudogene
Gm38596 7 14532918 to 14536041 3123 + lncRNA gene predicted gene, 38596
Obox4-ps3 7 14548714 to 14549233 519 + pseudogene oocyte specific homeobox 4, pseudogene 3
Vmn1r90 7 14561242 to 14562171 929 - protein coding gene vomeronasal 1 receptor 90
Zfp-ps 7 14566761 to 14567238 477 + pseudogene zinc finger protein, pseudogene
Ranbp2-ps1 7 14616384 to 14616786 402 + pseudogene RAN binding protein 2, pseudogene 1
Tssr70675 7 14616698 to 14616702 4 - TSS region transcription start site region 70675
Cpgi18340 7 14622194 to 14623547 1353 CpG island CpG island 18340
Obox3-ps7 7 14634039 to 14634573 534 + pseudogene oocyte specific homeobox 3, pseudogene 7
Obox7 7 14659708 to 14665996 6288 + protein coding gene oocyte specific homeobox 7
Obox3-ps1 7 14694074 to 14695674 1600 - pseudogene oocyte specific homeobox 3, pseudogene 1