Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:128179846-129369963

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr21a 7 118151499 to 128365612 10214113 QTL leishmaniasis resistance 21a
Bsbob2 7 122651440 to 129217600 6566160 QTL BSB obesity 2
Il4ppq 7 124914439 to 129217600 4303161 QTL IL-4 producing potential QTL
Itgad 7 128173933 to 128205504 31571 + protein coding gene integrin, alpha D
Gm39091 7 128182379 to 128184096 1717 - antisense lncRNA gene predicted gene, 39091
Tssr69402 7 128188555 to 128188557 2 + TSS region transcription start site region 69402
4931431B13Rik 7 128192050 to 128203328 11278 - lncRNA gene RIKEN cDNA 4931431B13 gene
Tssr75078 7 128203309 to 128203317 8 - TSS region transcription start site region 75078
Tssr75079 7 128203319 to 128203332 13 - TSS region transcription start site region 75079
Tssr69403 7 128203397 to 128203404 7 + TSS region transcription start site region 69403
Tssr69404 7 128203421 to 128203431 10 + TSS region transcription start site region 69404
Tssr69405 7 128203598 to 128203607 9 + TSS region transcription start site region 69405
Cox6a2 7 128205435 to 128206366 931 - protein coding gene cytochrome c oxidase subunit 6A2
Cpgi19784 7 128205723 to 128206061 338 CpG island CpG island 19784
Tssr2412 7 128205771 to 128205794 23 + TSS region transcription start site region 2412
Tssr69406 7 128205893 to 128205922 29 + TSS region transcription start site region 69406
Tssr75080 7 128205922 to 128205937 15 - TSS region transcription start site region 75080
Tssr75081 7 128205971 to 128206005 34 - TSS region transcription start site region 75081
Tssr75082 7 128206018 to 128206027 9 - TSS region transcription start site region 75082
Tssr75083 7 128206293 to 128206337 44 - TSS region transcription start site region 75083
Tssr75084 7 128206346 to 128206359 13 - TSS region transcription start site region 75084
Tssr75085 7 128206440 to 128206451 11 - TSS region transcription start site region 75085
Gm44850 7 128215616 to 128220788 5172 - antisense lncRNA gene predicted gene 44850
Tssr75086 7 128220868 to 128220879 11 - TSS region transcription start site region 75086
Tssr75087 7 128220890 to 128220914 24 - TSS region transcription start site region 75087
9130023H24Rik 7 128234458 to 128238031 3573 - protein coding gene RIKEN cDNA 9130023H24 gene
Tssr75088 7 128236031 to 128236036 5 - TSS region transcription start site region 75088
Cpgi19785 7 128237109 to 128238718 1609 CpG island CpG island 19785
Tssr69407 7 128237284 to 128237329 45 + TSS region transcription start site region 69407
Tssr69408 7 128237330 to 128237387 57 + TSS region transcription start site region 69408
Armc5 7 128237357 to 128245100 7743 + protein coding gene armadillo repeat containing 5
Tssr69409 7 128237391 to 128237401 10 + TSS region transcription start site region 69409
Tssr69410 7 128237511 to 128237554 43 + TSS region transcription start site region 69410
Tssr75089 7 128237984 to 128237995 11 - TSS region transcription start site region 75089
Tssr69411 7 128238092 to 128238123 31 + TSS region transcription start site region 69411
Tgfb1i1 7 128246812 to 128255699 8887 + protein coding gene transforming growth factor beta 1 induced transcript 1
Tssr69412 7 128246937 to 128246948 11 + TSS region transcription start site region 69412
Cpgi19786 7 128246947 to 128247217 270 CpG island CpG island 19786
Tssr69413 7 128246953 to 128246993 40 + TSS region transcription start site region 69413
Cpgi19787 7 128252640 to 128253360 720 CpG island CpG island 19787
Tssr69414 7 128252796 to 128252810 14 + TSS region transcription start site region 69414
Tssr69415 7 128265675 to 128265690 15 + TSS region transcription start site region 69415
Slc5a2 7 128265697 to 128272433 6736 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 2
Tssr69416 7 128266326 to 128266335 9 + TSS region transcription start site region 69416
Tssr69417 7 128266337 to 128266348 11 + TSS region transcription start site region 69417
Tssr2413 7 128266351 to 128266356 5 + TSS region transcription start site region 2413
Tssr69418 7 128266363 to 128266374 11 + TSS region transcription start site region 69418
Cpgi19788 7 128270780 to 128271172 392 CpG island CpG island 19788
BC017158 7 128271379 to 128298165 26786 - protein coding gene cDNA sequence BC017158
Tssr75090 7 128271678 to 128271719 41 - TSS region transcription start site region 75090
Tssr75091 7 128276081 to 128276086 5 - TSS region transcription start site region 75091
Mir3103 7 128288369 to 128288435 66 - miRNA gene microRNA 3103
Tssr75092 7 128289086 to 128289091 5 - TSS region transcription start site region 75092
Cpgi19789 7 128297477 to 128298250 773 CpG island CpG island 19789
Tssr75093 7 128298081 to 128298138 57 - TSS region transcription start site region 75093
Tssr69419 7 128314780 to 128314799 19 + TSS region transcription start site region 69419
Gm44650 7 128329808 to 128330001 193 + pseudogene predicted gene 44650
Tssr69420 7 128340413 to 128340446 33 + TSS region transcription start site region 69420
Gm6916 7 128340428 to 128341064 636 + pseudogene predicted pseudogene 6916
Gm32707 7 128344309 to 128347852 3543 - lncRNA gene predicted gene, 32707
Tssr69421 7 128344731 to 128344739 8 + TSS region transcription start site region 69421
Tssr75094 7 128346033 to 128346044 11 - TSS region transcription start site region 75094
Tssr75095 7 128346071 to 128346092 21 - TSS region transcription start site region 75095
Gm39092 7 128358793 to 128367010 8217 - lncRNA gene predicted gene, 39092
D7Dcr49 7 128365504 to 128365604 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 49
D7Mit67 7 128365511 to 128365612 101 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 67
Lmr21b 7 128365511 to 128365612 101 QTL leishmaniasis resistance 21b
Lmr21 7 128365511 to 128365612 101 QTL leishmaniasis resistance 21
Rgs10 7 128373621 to 128418758 45137 - protein coding gene regulator of G-protein signalling 10
Tssr69422 7 128373947 to 128373963 16 + TSS region transcription start site region 69422
Tssr69423 7 128374562 to 128374581 19 + TSS region transcription start site region 69423
Tssr75096 7 128376109 to 128376119 10 - TSS region transcription start site region 75096
Tssr75097 7 128376159 to 128376171 12 - TSS region transcription start site region 75097
Tssr75098 7 128376272 to 128376282 10 - TSS region transcription start site region 75098
Tssr69424 7 128376303 to 128376313 10 + TSS region transcription start site region 69424
Tssr75099 7 128393627 to 128393644 17 - TSS region transcription start site region 75099
Tssr75100 7 128393646 to 128393656 10 - TSS region transcription start site region 75100
Gm15503 7 128408968 to 128412341 3373 - unclassified non-coding RNA gene predicted gene 15503
Tssr75101 7 128410401 to 128410413 12 - TSS region transcription start site region 75101
Tssr75102 7 128412254 to 128412275 21 - TSS region transcription start site region 75102
Tssr75103 7 128412277 to 128412324 47 - TSS region transcription start site region 75103
Cpgi19790 7 128417439 to 128418855 1416 CpG island CpG island 19790
Tssr75104 7 128418127 to 128418145 18 - TSS region transcription start site region 75104
Tssr75105 7 128418154 to 128418192 38 - TSS region transcription start site region 75105
Tssr75106 7 128418379 to 128418391 12 - TSS region transcription start site region 75106
Tssr75107 7 128418673 to 128418714 41 - TSS region transcription start site region 75107
Gm32765 7 128429940 to 128437818 7878 + lncRNA gene predicted gene, 32765
Tial1 7 128439772 to 128461668 21896 - protein coding gene Tia1 cytotoxic granule-associated RNA binding protein-like 1
Tssr75108 7 128440673 to 128440677 4 - TSS region transcription start site region 75108
Tssr75109 7 128459722 to 128459726 4 - TSS region transcription start site region 75109
Cpgi19791 7 128460286 to 128462238 1952 CpG island CpG island 19791
Tssr75110 7 128461168 to 128461177 9 - TSS region transcription start site region 75110
Tssr2414 7 128461192 to 128461195 3 - TSS region transcription start site region 2414
Tssr75111 7 128461313 to 128461326 13 - TSS region transcription start site region 75111
Tssr75112 7 128461327 to 128461387 60 - TSS region transcription start site region 75112
Tssr75113 7 128461389 to 128461400 11 - TSS region transcription start site region 75113
Tssr75114 7 128461549 to 128461560 11 - TSS region transcription start site region 75114
Tssr75115 7 128461579 to 128461622 43 - TSS region transcription start site region 75115
Tssr75116 7 128461630 to 128461662 32 - TSS region transcription start site region 75116
Tssr69425 7 128461937 to 128461974 37 + TSS region transcription start site region 69425
Gm32816 7 128462068 to 128475571 13503 + lncRNA gene predicted gene, 32816
Gm24365 7 128478014 to 128478138 124 - miRNA gene predicted gene, 24365
Gm40457 7 128493822 to 128499847 6025 - lincRNA gene predicted gene, 40457
Tssr75117 7 128499831 to 128499834 3 - TSS region transcription start site region 75117
4921520J07Rik 7 128522562 to 128523147 585 unclassified gene RIKEN cDNA 4921520J07 gene
Tssr69426 7 128523261 to 128523270 9 + TSS region transcription start site region 69426
Cpgi19792 7 128523307 to 128524469 1162 CpG island CpG island 19792
Tssr75118 7 128523450 to 128523458 8 - TSS region transcription start site region 75118
Tssr69427 7 128523576 to 128523598 22 + TSS region transcription start site region 69427
Tssr69428 7 128523615 to 128523647 32 + TSS region transcription start site region 69428
Bag3 7 128523616 to 128546981 23365 + protein coding gene BCL2-associated athanogene 3
Tssr69429 7 128523648 to 128523667 19 + TSS region transcription start site region 69429
Tssr69430 7 128523729 to 128523734 5 + TSS region transcription start site region 69430
Tssr69431 7 128523762 to 128523782 20 + TSS region transcription start site region 69431
2610306O10Rik 7 128538932 to 128539543 611 + unclassified gene RIKEN cDNA 2610306O10 gene
Tssr69432 7 128540027 to 128540053 26 + TSS region transcription start site region 69432
Tssr75119 7 128540067 to 128540112 45 - TSS region transcription start site region 75119
Tssr69433 7 128540110 to 128540132 22 + TSS region transcription start site region 69433
Tssr69434 7 128541908 to 128541911 3 + TSS region transcription start site region 69434
Tssr69435 7 128542362 to 128542373 11 + TSS region transcription start site region 69435
Sluc19 7 128564398 to 128564655 257 QTL susceptibility to lung cancer 19
frzl 7 128564398 to 130321213 1756815 heritable phenotypic marker frizzy-like
Alcp14 7 128564398 to 128564655 257 QTL alcohol preference locus 14, female specific
Alcp12 7 128564398 to 128564655 257 QTL alcohol preference locus 12, male specific
D7Mit105 7 128564398 to 128564655 257 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 105
Gm45121 7 128590926 to 128593343 2417 - lincRNA gene predicted gene 45121
Gm7258 7 128595979 to 128596278 299 - pseudogene predicted gene 7258
Cpgi19793 7 128611076 to 128612028 952 CpG island CpG island 19793
Inpp5f 7 128611328 to 128696425 85097 + protein coding gene inositol polyphosphate-5-phosphatase F
Tssr69436 7 128611363 to 128611416 53 + TSS region transcription start site region 69436
Tssr69437 7 128638583 to 128638587 4 + TSS region transcription start site region 69437
Cpgi19794 7 128687456 to 128688635 1179 CpG island CpG island 19794
Tssr69438 7 128687536 to 128687579 43 + TSS region transcription start site region 69438
Tssr69439 7 128688029 to 128688047 18 + TSS region transcription start site region 69439
Tssr69440 7 128688450 to 128688472 22 + TSS region transcription start site region 69440
Tssr69441 7 128688480 to 128688500 20 + TSS region transcription start site region 69441
Gm43580 7 128688535 to 128688818 283 + pseudogene predicted gene 43580
Tssr69442 7 128688885 to 128688899 14 + TSS region transcription start site region 69442
Tssr69443 7 128689166 to 128689176 10 + TSS region transcription start site region 69443
Gm16044 7 128692689 to 128693138 449 + pseudogene predicted gene 16044
Tssr2415 7 128694243 to 128694247 4 + TSS region transcription start site region 2415
Tssr69444 7 128695600 to 128695612 12 + TSS region transcription start site region 69444
Mcmbp 7 128696441 to 128740429 43988 - protein coding gene minichromosome maintenance complex binding protein
Tssr75120 7 128697582 to 128697586 4 - TSS region transcription start site region 75120
Tssr75121 7 128717460 to 128717466 6 - TSS region transcription start site region 75121
Gm44673 7 128721049 to 128722044 995 - unclassified gene predicted gene 44673
Gm44674 7 128728394 to 128729522 1128 + antisense lncRNA gene predicted gene 44674
Gm23783 7 128734202 to 128734303 101 + snRNA gene predicted gene, 23783
Tssr75122 7 128739632 to 128739637 5 - TSS region transcription start site region 75122
Cpgi19795 7 128739668 to 128740805 1137 CpG island CpG island 19795
Tssr75123 7 128740397 to 128740410 13 - TSS region transcription start site region 75123
Tssr75124 7 128740412 to 128740423 11 - TSS region transcription start site region 75124
Tssr75125 7 128740434 to 128740470 36 - TSS region transcription start site region 75125
Tssr75126 7 128740471 to 128740525 54 - TSS region transcription start site region 75126
Gm44672 7 128744179 to 128745276 1097 - antisense lncRNA gene predicted gene 44672
Cpgi19796 7 128744606 to 128745325 719 CpG island CpG island 19796
Tssr75127 7 128744728 to 128744763 35 - TSS region transcription start site region 75127
Tssr69445 7 128744936 to 128745020 84 + TSS region transcription start site region 69445
Sec23ip 7 128744943 to 128784836 39893 + protein coding gene Sec23 interacting protein
Tssr75128 7 128745267 to 128745280 13 - TSS region transcription start site region 75128
Tssr69446 7 128748901 to 128748911 10 + TSS region transcription start site region 69446
Tssr69447 7 128748924 to 128748947 23 + TSS region transcription start site region 69447
Tssr69448 7 128748955 to 128748965 10 + TSS region transcription start site region 69448
n-R5s158 7 128774846 to 128774963 117 - rRNA gene nuclear encoded rRNA 5S 158
Gm25778 7 128826347 to 128826467 120 + miRNA gene predicted gene, 25778
Gm39093 7 128843064 to 128845369 2305 + lncRNA gene predicted gene, 39093
Cpgi19797 7 128854761 to 128854933 172 CpG island CpG island 19797
Gm32884 7 128854944 to 128906446 51502 + lincRNA gene predicted gene, 32884
Tssr69449 7 128919472 to 128919476 4 + TSS region transcription start site region 69449
D7Mit106 7 128942693 to 128942835 142 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 106
Cpgi19798 7 128997277 to 128997593 316 CpG island CpG island 19798
Gm4768 7 128997336 to 128998021 685 - pseudogene predicted gene 4768
Cpgi19799 7 128997921 to 128998153 232 CpG island CpG island 19799
Gm4259 7 129054319 to 129055076 757 - pseudogene predicted gene 4259
D7Mit104 7 129101439 to 129101574 135 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 104
D7Mit103 7 129217452 to 129217600 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 103
D7Dcr50 7 129217477 to 129217599 122 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 50
Cpgi19800 7 129256494 to 129257614 1120 CpG island CpG island 19800
Tssr69450 7 129257027 to 129257056 29 + TSS region transcription start site region 69450
Plpp4 7 129257031 to 129391412 134381 + protein coding gene phospholipid phosphatase 4