Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:127849975-128009980

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx4a 7 127840643 to 127850988 10345 + protein coding gene syntaxin 4A (placental)
Tssr75047 7 127850984 to 127851003 19 - TSS region transcription start site region 75047
Zfp668 7 127863047 to 127876828 13781 - protein coding gene zinc finger protein 668
Cpgi19772 7 127866751 to 127867181 430 CpG island CpG island 19772
Tssr75048 7 127874967 to 127874971 4 - TSS region transcription start site region 75048
Cpgi19773 7 127875330 to 127877393 2063 CpG island CpG island 19773
Tssr75049 7 127875613 to 127875623 10 - TSS region transcription start site region 75049
Tssr75050 7 127875633 to 127875673 40 - TSS region transcription start site region 75050
Tssr69306 7 127875742 to 127875758 16 + TSS region transcription start site region 69306
Tssr69307 7 127875831 to 127875851 20 + TSS region transcription start site region 69307
Tssr69308 7 127875925 to 127875948 23 + TSS region transcription start site region 69308
Tssr75051 7 127876100 to 127876152 52 - TSS region transcription start site region 75051
Tssr69309 7 127876170 to 127876254 84 + TSS region transcription start site region 69309
Tssr75052 7 127876546 to 127876610 64 - TSS region transcription start site region 75052
Zfp646 7 127876805 to 127885996 9191 + protein coding gene zinc finger protein 646
Tssr75053 7 127876810 to 127876854 44 - TSS region transcription start site region 75053
Tssr69310 7 127876898 to 127876919 21 + TSS region transcription start site region 69310
Tssr69311 7 127876924 to 127876954 30 + TSS region transcription start site region 69311
Tssr69312 7 127876955 to 127876971 16 + TSS region transcription start site region 69312
Tssr69313 7 127877130 to 127877145 15 + TSS region transcription start site region 69313
Tssr69314 7 127877146 to 127877174 28 + TSS region transcription start site region 69314
Prss53 7 127885841 to 127890970 5129 - protein coding gene protease, serine 53
Gm21974 7 127886227 to 127895454 9227 - protein coding gene predicted gene 21974
Tssr75054 7 127890918 to 127890953 35 - TSS region transcription start site region 75054
Tssr2409 7 127890968 to 127890972 4 - TSS region transcription start site region 2409
Vkorc1 7 127893063 to 127895617 2554 - protein coding gene vitamin K epoxide reductase complex, subunit 1
Tssr75055 7 127893449 to 127893456 7 - TSS region transcription start site region 75055
Tssr75056 7 127893464 to 127893481 17 - TSS region transcription start site region 75056
Tssr75057 7 127894636 to 127894664 28 - TSS region transcription start site region 75057
Tssr75058 7 127894678 to 127894687 9 - TSS region transcription start site region 75058
Cpgi19774 7 127895303 to 127895795 492 CpG island CpG island 19774
Tssr75059 7 127895578 to 127895647 69 - TSS region transcription start site region 75059
2200002A13Rik 7 127897568 to 127898276 708 + unclassified gene RIKEN cDNA 2200002A13 gene
Tssr75060 7 127898445 to 127898452 7 - TSS region transcription start site region 75060
Cpgi19775 7 127903926 to 127904392 466 CpG island CpG island 19775
Tssr69315 7 127904055 to 127904066 11 + TSS region transcription start site region 69315
Bckdk 7 127904073 to 127909664 5591 + protein coding gene branched chain ketoacid dehydrogenase kinase
Tssr69316 7 127904079 to 127904125 46 + TSS region transcription start site region 69316
Tssr69317 7 127904354 to 127904367 13 + TSS region transcription start site region 69317
Tssr69318 7 127904824 to 127904839 15 + TSS region transcription start site region 69318
Cpgi19776 7 127912310 to 127912833 523 CpG island CpG island 19776
Tssr69319 7 127912510 to 127912528 18 + TSS region transcription start site region 69319
Kat8 7 127912517 to 127925775 13258 + protein coding gene K(lysine) acetyltransferase 8
Tssr69320 7 127912677 to 127912717 40 + TSS region transcription start site region 69320
Tssr69321 7 127913011 to 127913014 3 + TSS region transcription start site region 69321
Tssr75061 7 127917707 to 127917723 16 - TSS region transcription start site region 75061
Tssr69322 7 127918044 to 127918051 7 + TSS region transcription start site region 69322
Tssr75062 7 127922690 to 127922701 11 - TSS region transcription start site region 75062
Prss8 7 127925716 to 127930104 4388 - protein coding gene protease, serine 8 (prostasin)
Tssr75063 7 127926909 to 127926920 11 - TSS region transcription start site region 75063
Cpgi19777 7 127929460 to 127929815 355 CpG island CpG island 19777
Tssr75064 7 127929975 to 127929980 5 - TSS region transcription start site region 75064
Tssr75065 7 127930018 to 127930040 22 - TSS region transcription start site region 75065
Tssr75066 7 127930066 to 127930122 56 - TSS region transcription start site region 75066
Prss36 7 127932638 to 127946725 14087 - protein coding gene protease, serine 36
Cpgi19778 7 127935384 to 127936200 816 CpG island CpG island 19778
Tssr75067 7 127935451 to 127935525 74 - TSS region transcription start site region 75067
Cpgi19779 7 127944595 to 127945056 461 CpG island CpG island 19779
Tssr75068 7 127946488 to 127946502 14 - TSS region transcription start site region 75068
Tssr75069 7 127946508 to 127946516 8 - TSS region transcription start site region 75069
Tssr2410 7 127946519 to 127946526 7 - TSS region transcription start site region 2410
Tssr75070 7 127946724 to 127946731 7 - TSS region transcription start site region 75070
Fus 7 127966788 to 127982032 15244 + protein coding gene fused in sarcoma
Cpgi19780 7 127966909 to 127968450 1541 CpG island CpG island 19780
Tssr69323 7 127967482 to 127967496 14 + TSS region transcription start site region 69323
Tssr69324 7 127968104 to 127968109 5 + TSS region transcription start site region 69324
Tssr69325 7 127968803 to 127968807 4 + TSS region transcription start site region 69325
Tssr69326 7 127969740 to 127969755 15 + TSS region transcription start site region 69326
Tssr69327 7 127971106 to 127971111 5 + TSS region transcription start site region 69327
Tssr69328 7 127971806 to 127971810 4 + TSS region transcription start site region 69328
Tssr69329 7 127973625 to 127973629 4 + TSS region transcription start site region 69329
Tssr69330 7 127974393 to 127974407 14 + TSS region transcription start site region 69330
Tssr2411 7 127981933 to 127981966 33 + TSS region transcription start site region 2411
Tssr75071 7 127982026 to 127982030 4 - TSS region transcription start site region 75071
Gm26690 7 127982570 to 127984881 2311 - lincRNA gene predicted gene, 26690
Tssr69331 7 127989087 to 127989100 13 + TSS region transcription start site region 69331
Pycard 7 127991373 to 127993867 2494 - protein coding gene PYD and CARD domain containing
Tssr75072 7 127993170 to 127993185 15 - TSS region transcription start site region 75072
Gm45205 7 127993269 to 127996598 3329 + unclassified gene predicted gene 45205
Tssr75073 7 127993702 to 127993762 60 - TSS region transcription start site region 75073
Tssr75074 7 127993831 to 127993845 14 - TSS region transcription start site region 75074
Gm15533 7 128001899 to 128005190 3291 - antisense lncRNA gene predicted gene 15533
Tssr69332 7 128003889 to 128003896 7 + TSS region transcription start site region 69332
Tssr69333 7 128003911 to 128004002 91 + TSS region transcription start site region 69333
Trim72 7 128003949 to 128011033 7084 + protein coding gene tripartite motif-containing 72
Cpgi19781 7 128004508 to 128004959 451 CpG island CpG island 19781
Tssr69334 7 128004549 to 128004582 33 + TSS region transcription start site region 69334
Tssr75075 7 128005152 to 128005168 16 - TSS region transcription start site region 75075
Cpgi19782 7 128009822 to 128010465 643 CpG island CpG island 19782