Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:127687130-128067145

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcl7c 7 127661456 to 127708933 47477 - protein coding gene B cell CLL/lymphoma 7C
Tssr69268 7 127691658 to 127691668 10 + TSS region transcription start site region 69268
Tssr69269 7 127691924 to 127691984 60 + TSS region transcription start site region 69269
Gm39090 7 127691935 to 127700793 8858 + lincRNA gene predicted gene, 39090
Cpgi19760 7 127707903 to 127709217 1314 CpG island CpG island 19760
Tssr75024 7 127708050 to 127708084 34 - TSS region transcription start site region 75024
Tssr75025 7 127708098 to 127708118 20 - TSS region transcription start site region 75025
Mir762 7 127708487 to 127708562 75 + miRNA gene microRNA 762
Tssr75026 7 127708585 to 127708602 17 - TSS region transcription start site region 75026
Tssr75027 7 127708620 to 127708665 45 - TSS region transcription start site region 75027
Tssr75028 7 127708680 to 127708706 26 - TSS region transcription start site region 75028
Tssr75029 7 127708738 to 127708791 53 - TSS region transcription start site region 75029
Tssr75030 7 127708849 to 127708877 28 - TSS region transcription start site region 75030
Tssr75031 7 127708886 to 127708918 32 - TSS region transcription start site region 75031
Tssr69270 7 127712709 to 127712745 36 + TSS region transcription start site region 69270
Ctf1 7 127712736 to 127718192 5456 + protein coding gene cardiotrophin 1
Cpgi19761 7 127713063 to 127713272 209 CpG island CpG island 19761
Cpgi19762 7 127716916 to 127717594 678 CpG island CpG island 19762
Ctf2 7 127718960 to 127725616 6656 - protein coding gene cardiotrophin 2
D7Ertd481e 7 127724318 to 127724527 209 DNA segment DNA segment, Chr 7, ERATO Doi 481, expressed
Tssr2408 7 127730912 to 127730914 2 + TSS region transcription start site region 2408
Tssr69271 7 127744299 to 127744321 22 + TSS region transcription start site region 69271
Fbxl19 7 127744543 to 127769483 24940 + protein coding gene F-box and leucine-rich repeat protein 19
Cpgi19763 7 127744962 to 127746348 1386 CpG island CpG island 19763
Tssr69272 7 127745532 to 127745544 12 + TSS region transcription start site region 69272
Tssr69273 7 127745785 to 127745824 39 + TSS region transcription start site region 69273
Tssr75032 7 127746070 to 127746095 25 - TSS region transcription start site region 75032
Tssr69274 7 127746254 to 127746321 67 + TSS region transcription start site region 69274
Cpgi19764 7 127746531 to 127747498 967 CpG island CpG island 19764
Tssr69275 7 127746533 to 127746565 32 + TSS region transcription start site region 69275
Tssr69276 7 127746566 to 127746581 15 + TSS region transcription start site region 69276
Tssr69277 7 127746714 to 127746729 15 + TSS region transcription start site region 69277
Tssr69278 7 127746737 to 127746747 10 + TSS region transcription start site region 69278
Tssr69279 7 127748108 to 127748120 12 + TSS region transcription start site region 69279
Tssr69280 7 127748137 to 127748155 18 + TSS region transcription start site region 69280
Tssr69281 7 127748167 to 127748177 10 + TSS region transcription start site region 69281
Tssr69282 7 127767447 to 127767468 21 + TSS region transcription start site region 69282
Cpgi19765 7 127767461 to 127767863 402 CpG island CpG island 19765
Tssr69283 7 127767473 to 127767486 13 + TSS region transcription start site region 69283
Tssr69284 7 127767504 to 127767517 13 + TSS region transcription start site region 69284
Cpgi19766 7 127769718 to 127770243 525 CpG island CpG island 19766
Tssr75033 7 127769750 to 127769763 13 - TSS region transcription start site region 75033
Tssr69285 7 127769809 to 127769854 45 + TSS region transcription start site region 69285
Orai3 7 127769815 to 127775150 5335 + protein coding gene ORAI calcium release-activated calcium modulator 3
Tssr69286 7 127769858 to 127769863 5 + TSS region transcription start site region 69286
Tssr69287 7 127769944 to 127769971 27 + TSS region transcription start site region 69287
Cpgi19767 7 127776447 to 127778326 1879 CpG island CpG island 19767
Setd1a 7 127776670 to 127800122 23452 + protein coding gene SET domain containing 1A
Tssr69288 7 127777095 to 127777152 57 + TSS region transcription start site region 69288
Tssr69289 7 127777315 to 127777367 52 + TSS region transcription start site region 69289
Tssr69290 7 127777376 to 127777413 37 + TSS region transcription start site region 69290
Tssr75034 7 127777734 to 127777770 36 - TSS region transcription start site region 75034
Tssr69291 7 127784029 to 127784050 21 + TSS region transcription start site region 69291
Gm49388 7 127785608 to 127803802 18194 + protein coding gene predicted gene, 49388
Cpgi19768 7 127799050 to 127799281 231 CpG island CpG island 19768
9430064I24Rik 7 127800094 to 127802762 2668 - unclassified gene RIKEN cDNA 9430064I24 gene
Hsd3b7 7 127800604 to 127803802 3198 + protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
Tssr69292 7 127800608 to 127800615 7 + TSS region transcription start site region 69292
Tssr69293 7 127800623 to 127800696 73 + TSS region transcription start site region 69293
Tssr69294 7 127800711 to 127800719 8 + TSS region transcription start site region 69294
Tssr69295 7 127800844 to 127800849 5 + TSS region transcription start site region 69295
Cpgi19769 7 127802415 to 127802604 189 CpG island CpG island 19769
Stx1b 7 127803900 to 127824531 20631 - protein coding gene syntaxin 1B
Tssr75035 7 127806626 to 127806637 11 - TSS region transcription start site region 75035
Tssr75036 7 127806959 to 127806992 33 - TSS region transcription start site region 75036
Tssr75037 7 127807017 to 127807034 17 - TSS region transcription start site region 75037
Tssr75038 7 127807245 to 127807268 23 - TSS region transcription start site region 75038
Tssr75039 7 127807299 to 127807330 31 - TSS region transcription start site region 75039
Tssr75040 7 127810934 to 127810951 17 - TSS region transcription start site region 75040
Gm45204 7 127812154 to 127813507 1353 - unclassified gene predicted gene 45204
Cpgi19770 7 127824219 to 127824716 497 CpG island CpG island 19770
Tssr75041 7 127824469 to 127824580 111 - TSS region transcription start site region 75041
Tssr75042 7 127824765 to 127824777 12 - TSS region transcription start site region 75042
Tssr75043 7 127824836 to 127824849 13 - TSS region transcription start site region 75043
Stx4a 7 127840643 to 127850988 10345 + protein coding gene syntaxin 4A (placental)
Cpgi19771 7 127840905 to 127842611 1706 CpG island CpG island 19771
Tssr69296 7 127840997 to 127841018 21 + TSS region transcription start site region 69296
Tssr75044 7 127841473 to 127841481 8 - TSS region transcription start site region 75044
Tssr69297 7 127841700 to 127841743 43 + TSS region transcription start site region 69297
Tssr69298 7 127841752 to 127841803 51 + TSS region transcription start site region 69298
Tssr69299 7 127841817 to 127841847 30 + TSS region transcription start site region 69299
Tssr69300 7 127841857 to 127841865 8 + TSS region transcription start site region 69300
Tssr69301 7 127841866 to 127841880 14 + TSS region transcription start site region 69301
Tssr69302 7 127841904 to 127841933 29 + TSS region transcription start site region 69302
Tssr69303 7 127841947 to 127841962 15 + TSS region transcription start site region 69303
Tssr75045 7 127842465 to 127842488 23 - TSS region transcription start site region 75045
Tssr69304 7 127848387 to 127848398 11 + TSS region transcription start site region 69304
Tssr69305 7 127848878 to 127848917 39 + TSS region transcription start site region 69305
Tssr75046 7 127848952 to 127848968 16 - TSS region transcription start site region 75046
Tssr75047 7 127850984 to 127851003 19 - TSS region transcription start site region 75047
Zfp668 7 127863047 to 127876828 13781 - protein coding gene zinc finger protein 668
Cpgi19772 7 127866751 to 127867181 430 CpG island CpG island 19772
Tssr75048 7 127874967 to 127874971 4 - TSS region transcription start site region 75048
Cpgi19773 7 127875330 to 127877393 2063 CpG island CpG island 19773
Tssr75049 7 127875613 to 127875623 10 - TSS region transcription start site region 75049
Tssr75050 7 127875633 to 127875673 40 - TSS region transcription start site region 75050
Tssr69306 7 127875742 to 127875758 16 + TSS region transcription start site region 69306
Tssr69307 7 127875831 to 127875851 20 + TSS region transcription start site region 69307
Tssr69308 7 127875925 to 127875948 23 + TSS region transcription start site region 69308
Tssr75051 7 127876100 to 127876152 52 - TSS region transcription start site region 75051
Tssr69309 7 127876170 to 127876254 84 + TSS region transcription start site region 69309
Tssr75052 7 127876546 to 127876610 64 - TSS region transcription start site region 75052
Zfp646 7 127876805 to 127885996 9191 + protein coding gene zinc finger protein 646
Tssr75053 7 127876810 to 127876854 44 - TSS region transcription start site region 75053
Tssr69310 7 127876898 to 127876919 21 + TSS region transcription start site region 69310
Tssr69311 7 127876924 to 127876954 30 + TSS region transcription start site region 69311
Tssr69312 7 127876955 to 127876971 16 + TSS region transcription start site region 69312
Tssr69313 7 127877130 to 127877145 15 + TSS region transcription start site region 69313
Tssr69314 7 127877146 to 127877174 28 + TSS region transcription start site region 69314
Prss53 7 127885841 to 127890970 5129 - protein coding gene protease, serine 53
Gm21974 7 127886227 to 127895454 9227 - protein coding gene predicted gene 21974
Tssr75054 7 127890918 to 127890953 35 - TSS region transcription start site region 75054
Tssr2409 7 127890968 to 127890972 4 - TSS region transcription start site region 2409
Vkorc1 7 127893063 to 127895617 2554 - protein coding gene vitamin K epoxide reductase complex, subunit 1
Tssr75055 7 127893449 to 127893456 7 - TSS region transcription start site region 75055
Tssr75056 7 127893464 to 127893481 17 - TSS region transcription start site region 75056
Tssr75057 7 127894636 to 127894664 28 - TSS region transcription start site region 75057
Tssr75058 7 127894678 to 127894687 9 - TSS region transcription start site region 75058
Cpgi19774 7 127895303 to 127895795 492 CpG island CpG island 19774
Tssr75059 7 127895578 to 127895647 69 - TSS region transcription start site region 75059
2200002A13Rik 7 127897568 to 127898276 708 + unclassified gene RIKEN cDNA 2200002A13 gene
Tssr75060 7 127898445 to 127898452 7 - TSS region transcription start site region 75060
Cpgi19775 7 127903926 to 127904392 466 CpG island CpG island 19775
Tssr69315 7 127904055 to 127904066 11 + TSS region transcription start site region 69315
Bckdk 7 127904073 to 127909664 5591 + protein coding gene branched chain ketoacid dehydrogenase kinase
Tssr69316 7 127904079 to 127904125 46 + TSS region transcription start site region 69316
Tssr69317 7 127904354 to 127904367 13 + TSS region transcription start site region 69317
Tssr69318 7 127904824 to 127904839 15 + TSS region transcription start site region 69318
Cpgi19776 7 127912310 to 127912833 523 CpG island CpG island 19776
Tssr69319 7 127912510 to 127912528 18 + TSS region transcription start site region 69319
Kat8 7 127912517 to 127925775 13258 + protein coding gene K(lysine) acetyltransferase 8
Tssr69320 7 127912677 to 127912717 40 + TSS region transcription start site region 69320
Tssr69321 7 127913011 to 127913014 3 + TSS region transcription start site region 69321
Tssr75061 7 127917707 to 127917723 16 - TSS region transcription start site region 75061
Tssr69322 7 127918044 to 127918051 7 + TSS region transcription start site region 69322
Tssr75062 7 127922690 to 127922701 11 - TSS region transcription start site region 75062
Prss8 7 127925716 to 127930104 4388 - protein coding gene protease, serine 8 (prostasin)
Tssr75063 7 127926909 to 127926920 11 - TSS region transcription start site region 75063
Cpgi19777 7 127929460 to 127929815 355 CpG island CpG island 19777
Tssr75064 7 127929975 to 127929980 5 - TSS region transcription start site region 75064
Tssr75065 7 127930018 to 127930040 22 - TSS region transcription start site region 75065
Tssr75066 7 127930066 to 127930122 56 - TSS region transcription start site region 75066
Prss36 7 127932638 to 127946725 14087 - protein coding gene protease, serine 36
Cpgi19778 7 127935384 to 127936200 816 CpG island CpG island 19778
Tssr75067 7 127935451 to 127935525 74 - TSS region transcription start site region 75067
Cpgi19779 7 127944595 to 127945056 461 CpG island CpG island 19779
Tssr75068 7 127946488 to 127946502 14 - TSS region transcription start site region 75068
Tssr75069 7 127946508 to 127946516 8 - TSS region transcription start site region 75069
Tssr2410 7 127946519 to 127946526 7 - TSS region transcription start site region 2410
Tssr75070 7 127946724 to 127946731 7 - TSS region transcription start site region 75070
Fus 7 127966788 to 127982032 15244 + protein coding gene fused in sarcoma
Cpgi19780 7 127966909 to 127968450 1541 CpG island CpG island 19780
Tssr69323 7 127967482 to 127967496 14 + TSS region transcription start site region 69323
Tssr69324 7 127968104 to 127968109 5 + TSS region transcription start site region 69324
Tssr69325 7 127968803 to 127968807 4 + TSS region transcription start site region 69325
Tssr69326 7 127969740 to 127969755 15 + TSS region transcription start site region 69326
Tssr69327 7 127971106 to 127971111 5 + TSS region transcription start site region 69327
Tssr69328 7 127971806 to 127971810 4 + TSS region transcription start site region 69328
Tssr69329 7 127973625 to 127973629 4 + TSS region transcription start site region 69329
Tssr69330 7 127974393 to 127974407 14 + TSS region transcription start site region 69330
Tssr2411 7 127981933 to 127981966 33 + TSS region transcription start site region 2411
Tssr75071 7 127982026 to 127982030 4 - TSS region transcription start site region 75071
Gm26690 7 127982570 to 127984881 2311 - lincRNA gene predicted gene, 26690
Tssr69331 7 127989087 to 127989100 13 + TSS region transcription start site region 69331
Pycard 7 127991373 to 127993867 2494 - protein coding gene PYD and CARD domain containing
Tssr75072 7 127993170 to 127993185 15 - TSS region transcription start site region 75072
Gm45205 7 127993269 to 127996598 3329 + unclassified gene predicted gene 45205
Tssr75073 7 127993702 to 127993762 60 - TSS region transcription start site region 75073
Tssr75074 7 127993831 to 127993845 14 - TSS region transcription start site region 75074
Gm15533 7 128001899 to 128005190 3291 - antisense lncRNA gene predicted gene 15533
Tssr69332 7 128003889 to 128003896 7 + TSS region transcription start site region 69332
Tssr69333 7 128003911 to 128004002 91 + TSS region transcription start site region 69333
Trim72 7 128003949 to 128011033 7084 + protein coding gene tripartite motif-containing 72
Cpgi19781 7 128004508 to 128004959 451 CpG island CpG island 19781
Tssr69334 7 128004549 to 128004582 33 + TSS region transcription start site region 69334
Tssr75075 7 128005152 to 128005168 16 - TSS region transcription start site region 75075
Cpgi19782 7 128009822 to 128010465 643 CpG island CpG island 19782
Gm19366 7 128013029 to 128013184 155 - pseudogene predicted gene, 19366
Gm5738 7 128016442 to 128017220 778 - pseudogene predicted gene 5738
Gm9299 7 128041254 to 128042390 1136 - pseudogene predicted gene 9299
Gm22809 7 128061705 to 128061860 155 - snRNA gene predicted gene, 22809
Tssr69335 7 128062635 to 128062646 11 + TSS region transcription start site region 69335
Itgam 7 128062640 to 128118491 55851 + protein coding gene integrin alpha M
Tssr69336 7 128062657 to 128062687 30 + TSS region transcription start site region 69336
Gm49368 7 128062683 to 128128160 65477 + protein coding gene predicted gene, 49368
Tssr69337 7 128062694 to 128062697 3 + TSS region transcription start site region 69337
Tssr69338 7 128062698 to 128062730 32 + TSS region transcription start site region 69338
Tssr69339 7 128063726 to 128063740 14 + TSS region transcription start site region 69339
Tssr69340 7 128064781 to 128064799 18 + TSS region transcription start site region 69340